Gene annotation
Transcriptome id Sobic.004G347400.1
Synonym PUM1, Sb04g037410, APUM1
Functional annotation pumilio-family RNA binding protein, putative, expressed
UniProt C5XVY4
Pfam PF00806 PF07990
Panther DB PTHR12537 PTHR12537:SF71
NCBI CDD KOG1488; Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily)
KEGG Orthology K17943; pumilio RNA-binding family
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT3G10360 : pumilio 4
RAP-DB (Rice) LOC_Os02g57390.1 : pumilio-family RNA binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a032784 , Zm00025a022620 , Zm00025a025936
Brachypodium KQK01385 , KQK08049 , PNT72103
Barley HORVU6Hr1G091310.6 , HORVU6Hr1G091310.7 , HORVU6Hr1G091310.4 , HORVU6Hr1G091310.5 , HORVU6Hr1G091310.2 , HORVU6Hr1G091310.3 , HORVU6Hr1G091310.1 , HORVU1Hr1G004200.18 , HORVU1Hr1G004200.15 , HORVU1Hr1G004200.14 , HORVU1Hr1G004200.17 , HORVU1Hr1G004200.16 , HORVU1Hr1G004200.11 , HORVU1Hr1G004200.10 , HORVU1Hr1G004200.13 , HORVU1Hr1G004200.12 , HORVU1Hr1G004200.9 , HORVU1Hr1G004200.8 , HORVU1Hr1G004200.1 , HORVU1Hr1G004200.3 , HORVU1Hr1G004200.2 , HORVU1Hr1G004200.5 , HORVU1Hr1G004200.4 , HORVU1Hr1G004200.7 , HORVU1Hr1G004200.6
Wheat TraesCS6D02G379800 , TraesCS1A02G029200 , TraesCS1B02G036400 , TraesCS6B02G434300 , TraesCS6A02G394300 , TraesCS1D02G029400
Populus -


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cDNA sequences
Sobic.004G347400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G422500 expressed protein -
2 Sobic.001G058700 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
3 Sobic.003G118200 phosphoadenosine phosphosulfate, putative, expressed -
4 Sobic.001G114000 expressed protein -
5 Sobic.007G172400 AAA-type ATPase family protein, putative, expressed K13338: peroxin-1
6 Sobic.004G331100 WD domain and HEAT domain containing protein, putative, expressed K08333: PIK3R4, phosphoinositide-3-kinase, regulatory subunit 4
7 Sobic.009G053900 HECT-domain domain containing protein, expressed K10589: ubiquitin-protein ligase E3 C
8 Sobic.001G065000 expressed protein -
9 Sobic.001G474600 calmodulin-binding transcription activator, putative, expressed -
10 Sobic.009G191000 MATH domain containing protein, expressed -
11 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
12 Sobic.001G146800 expressed protein -
13 Sobic.003G093800 - K03254: translation initiation factor 3 subunit A
14 Sobic.007G163100 expressed protein K14972: PAXIP1, PAX-interacting protein 1
15 Sobic.009G113000 chaperone protein dnaJ 49, putative, expressed K09518: DnaJ homolog subfamily B member 12
16 Sobic.001G289800 BAH domain containing protein, putative, expressed -
17 Sobic.002G008900 sister chromatid cohesion 2, putative, expressed K06672: SCC2, cohesin loading factor subunit SCC2
18 Sobic.001G289600 BAH domain containing protein, putative, expressed -
19 Sobic.003G195000 OsFtsH5 FtsH protease, homologue of AtFtsH4, expressed K08955: ATP-dependent metalloprotease
20 Sobic.001G050200 expressed protein -


Gene co-expression network
sample Sobic004G347400 Sobic004G347400 Sobic003G422500 Sobic003G422500 Sobic004G347400--Sobic003G422500 Sobic001G058700 Sobic001G058700 Sobic004G347400--Sobic001G058700 Sobic003G118200 Sobic003G118200 Sobic004G347400--Sobic003G118200 Sobic001G114000 Sobic001G114000 Sobic004G347400--Sobic001G114000 Sobic007G172400 Sobic007G172400 Sobic004G347400--Sobic007G172400 Sobic004G331100 Sobic004G331100 Sobic004G347400--Sobic004G331100 Sobic009G053900 Sobic009G053900 Sobic004G347400--Sobic009G053900 Sobic001G065000 Sobic001G065000 Sobic004G347400--Sobic001G065000 Sobic001G474600 Sobic001G474600 Sobic004G347400--Sobic001G474600 Sobic002G411600 Sobic002G411600 Sobic003G422500--Sobic002G411600 Sobic009G191000 Sobic009G191000 Sobic003G422500--Sobic009G191000 Sobic001G289600 Sobic001G289600 Sobic003G422500--Sobic001G289600 Sobic009G165700 Sobic009G165700 Sobic003G422500--Sobic009G165700 Sobic002G008900 Sobic002G008900 Sobic003G422500--Sobic002G008900 Sobic004G034900 Sobic004G034900 Sobic003G422500--Sobic004G034900 Sobic001G289800 Sobic001G289800 Sobic003G422500--Sobic001G289800 Sobic001G540400 Sobic001G540400 Sobic003G422500--Sobic001G540400 Sobic008G132600 Sobic008G132600 Sobic003G422500--Sobic008G132600 Sobic003G408600 Sobic003G408600 Sobic001G058700--Sobic003G408600 Sobic001G058700--Sobic007G172400 Sobic001G050600 Sobic001G050600 Sobic001G058700--Sobic001G050600 Sobic007G062800 Sobic007G062800 Sobic001G058700--Sobic007G062800 Sobic001G058700--Sobic001G540400 Sobic005G008800 Sobic005G008800 Sobic001G058700--Sobic005G008800 Sobic001G058700--Sobic004G347400 Sobic005G028600 Sobic005G028600 Sobic001G058700--Sobic005G028600 Sobic001G219900 Sobic001G219900 Sobic001G058700--Sobic001G219900 Sobic003G118200--Sobic009G053900 Sobic003G118200--Sobic009G191000 Sobic009G113000 Sobic009G113000 Sobic003G118200--Sobic009G113000 Sobic003G118200--Sobic003G422500 Sobic003G118200--Sobic002G008900 Sobic003G118200--Sobic004G347400 Sobic007G075400 Sobic007G075400 Sobic003G118200--Sobic007G075400 Sobic001G451400 Sobic001G451400 Sobic003G118200--Sobic001G451400 Sobic003G313500 Sobic003G313500 Sobic003G118200--Sobic003G313500 Sobic007G217000 Sobic007G217000 Sobic001G114000--Sobic007G217000 Sobic002G112700 Sobic002G112700 Sobic001G114000--Sobic002G112700 Sobic001G114000--Sobic001G065000 Sobic004G067700 Sobic004G067700 Sobic001G114000--Sobic004G067700 Sobic009G166300 Sobic009G166300 Sobic001G114000--Sobic009G166300 Sobic008G047800 Sobic008G047800 Sobic001G114000--Sobic008G047800 Sobic004G072100 Sobic004G072100 Sobic001G114000--Sobic004G072100 Sobic005G118600 Sobic005G118600 Sobic001G114000--Sobic005G118600 Sobic009G126400 Sobic009G126400 Sobic001G114000--Sobic009G126400 Sobic007G172400--Sobic001G058700 Sobic002G071500 Sobic002G071500 Sobic007G172400--Sobic002G071500 Sobic007G172400--Sobic001G050600 Sobic007G172400--Sobic004G347400 Sobic002G419800 Sobic002G419800 Sobic007G172400--Sobic002G419800 Sobic007G172400--Sobic001G219900 Sobic004G113400 Sobic004G113400 Sobic007G172400--Sobic004G113400 Sobic007G172400--Sobic001G474600 Sobic007G172400--Sobic003G408600 Sobic004G331100--Sobic007G075400 Sobic009G027300 Sobic009G027300 Sobic004G331100--Sobic009G027300 Sobic004G331100--Sobic002G419800 Sobic003G101400 Sobic003G101400 Sobic004G331100--Sobic003G101400 Sobic001G290100 Sobic001G290100 Sobic004G331100--Sobic001G290100 Sobic001G050200 Sobic001G050200 Sobic004G331100--Sobic001G050200 Sobic004G331100--Sobic004G347400 Sobic004G331100--Sobic003G118200 Sobic004G065000 Sobic004G065000 Sobic004G331100--Sobic004G065000 Sobic009G053900--Sobic009G191000 Sobic009G053900--Sobic003G118200 Sobic009G053900--Sobic002G008900 Sobic009G053900--Sobic003G422500 Sobic001G365900 Sobic001G365900 Sobic009G053900--Sobic001G365900 Sobic009G053900--Sobic001G289600 Sobic010G206900 Sobic010G206900 Sobic009G053900--Sobic010G206900 Sobic009G053900--Sobic007G075400 Sobic009G053900--Sobic001G540400 Sobic001G065000--Sobic001G114000 Sobic001G281100 Sobic001G281100 Sobic001G065000--Sobic001G281100 Sobic006G012500 Sobic006G012500 Sobic001G065000--Sobic006G012500 Sobic001G534800 Sobic001G534800 Sobic001G065000--Sobic001G534800 Sobic001G065000--Sobic005G118600 Sobic008G099800 Sobic008G099800 Sobic001G065000--Sobic008G099800 Sobic003G093800 Sobic003G093800 Sobic001G065000--Sobic003G093800 Sobic006G037700 Sobic006G037700 Sobic001G065000--Sobic006G037700 Sobic003G229500 Sobic003G229500 Sobic001G065000--Sobic003G229500 Sobic003G280800 Sobic003G280800 Sobic001G474600--Sobic003G280800 Sobic001G474600--Sobic009G166300 Sobic001G125200 Sobic001G125200 Sobic001G474600--Sobic001G125200 Sobic003G372700 Sobic003G372700 Sobic001G474600--Sobic003G372700 Sobic001G474600--Sobic007G217000 Sobic007G096000 Sobic007G096000 Sobic001G474600--Sobic007G096000 Sobic007G207000 Sobic007G207000 Sobic001G474600--Sobic007G207000 Sobic001G474600--Sobic009G191000 Sobic001G241200 Sobic001G241200 Sobic001G474600--Sobic001G241200
Octagon: transcription factors


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