Gene annotation
Transcriptome id Sobic.007G163100.2,Sobic.007G163100.3,Sobic.007G163100.4
Synonym
Functional annotation expressed protein
UniProt A0A1Z5RAT2 , C5YMR0
Pfam PF16987
Panther DB PTHR33137 PTHR33137:SF4
NCBI CDD -
KEGG Orthology K14972; PAXIP1, PAX-interacting protein 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G15780 : -
RAP-DB (Rice) LOC_Os08g45080.1 : expressed protein
MaizeGDB (Corn) Zm00025a005514 , Zm00025a030495
Brachypodium KQJ94698
Barley HORVU2Hr1G123080.1 , HORVU2Hr1G123080.2 , HORVU2Hr1G123080.3 , HORVU2Hr1G123080.4 , HORVU2Hr1G123080.5 , HORVU7Hr1G060970.3 , HORVU7Hr1G060970.2 , HORVU7Hr1G060970.1 , HORVU7Hr1G060970.7 , HORVU7Hr1G060970.6 , HORVU7Hr1G060970.5 , HORVU7Hr1G060970.4 , HORVU7Hr1G118370.2 , HORVU7Hr1G118370.5 , HORVU7Hr1G118370.4 , HORVU7Hr1G118370.1 , HORVU7Hr1G118370.3
Wheat TraesCS7B02G460900 , TraesCS1A02G403500 , TraesCS7B02G460900 , TraesCS2B02G598700 , TraesCS7D02G281700 , TraesCS7D02G281700 , TraesCS7D02G281700 , TraesCS7A02G540000 , TraesCS7A02G283500 , TraesCS7A02G283500 , TraesCS7A02G283500 , TraesCS7A02G283500 , TraesCS7A02G283500 , TraesCS2D02G594100 , TraesCS7D02G526100 , TraesCS7B02G177500 , TraesCS7D02G526100 , TraesCS4A02G315600 , TraesCS2B02G599400 , TraesCS7B02G177500 , TraesCS7B02G177500
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
2 Sobic.008G118200 vesicle tethering family protein, putative, expressed -
3 Sobic.002G045600 transcriptional corepressor SEUSS, putative, expressed -
4 Sobic.001G117200 AGC_AGC_other_GWLd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
5 Sobic.003G072200 zinc finger protein, putative, expressed K11978: E3 ubiquitin-protein ligase UBR3
6 Sobic.003G422500 expressed protein -
7 Sobic.001G540400 expressed protein -
8 Sobic.001G289800 BAH domain containing protein, putative, expressed -
9 Sobic.004G113400 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
10 Sobic.001G273700 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
11 Sobic.001G058700 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
12 Sobic.010G004100 expressed protein -
13 Sobic.003G155900 mov34/MPN/PAD-1 family protein, expressed K11866: STAMBP, STAM-binding protein
14 Sobic.008G099800 expressed protein -
15 Sobic.001G289600 BAH domain containing protein, putative, expressed -
16 Sobic.008G092600 ubiquitin-protein ligase 1, putative, expressed K10592: HUWE1, MULE, E3 ubiquitin-protein ligase HUWE1
17 Sobic.003G195000 OsFtsH5 FtsH protease, homologue of AtFtsH4, expressed K08955: ATP-dependent metalloprotease
18 Sobic.010G105200 SYD, putative, expressed -
19 Sobic.004G347400 pumilio-family RNA binding protein, putative, expressed K17943: pumilio RNA-binding family
20 Sobic.004G065000 expressed protein -


Gene co-expression network
sample Sobic007G163100 Sobic007G163100 Sobic003G408600 Sobic003G408600 Sobic007G163100--Sobic003G408600 Sobic008G118200 Sobic008G118200 Sobic007G163100--Sobic008G118200 Sobic002G045600 Sobic002G045600 Sobic007G163100--Sobic002G045600 Sobic001G117200 Sobic001G117200 Sobic007G163100--Sobic001G117200 Sobic003G072200 Sobic003G072200 Sobic007G163100--Sobic003G072200 Sobic003G422500 Sobic003G422500 Sobic007G163100--Sobic003G422500 Sobic001G540400 Sobic001G540400 Sobic007G163100--Sobic001G540400 Sobic001G289800 Sobic001G289800 Sobic007G163100--Sobic001G289800 Sobic004G113400 Sobic004G113400 Sobic007G163100--Sobic004G113400 Sobic003G408600--Sobic001G540400 Sobic005G008800 Sobic005G008800 Sobic003G408600--Sobic005G008800 Sobic002G397500 Sobic002G397500 Sobic003G408600--Sobic002G397500 Sobic005G112300 Sobic005G112300 Sobic003G408600--Sobic005G112300 Sobic003G408600--Sobic007G163100 Sobic010G112100 Sobic010G112100 Sobic003G408600--Sobic010G112100 Sobic001G058700 Sobic001G058700 Sobic003G408600--Sobic001G058700 Sobic002G071500 Sobic002G071500 Sobic003G408600--Sobic002G071500 Sobic003G408600--Sobic002G045600 Sobic008G118200--Sobic007G163100 Sobic010G069100 Sobic010G069100 Sobic008G118200--Sobic010G069100 Sobic008G118200--Sobic003G408600 Sobic009G044800 Sobic009G044800 Sobic008G118200--Sobic009G044800 Sobic008G118200--Sobic010G112100 Sobic008G118200--Sobic005G112300 Sobic001G207000 Sobic001G207000 Sobic008G118200--Sobic001G207000 Sobic001G289600 Sobic001G289600 Sobic008G118200--Sobic001G289600 Sobic007G105100 Sobic007G105100 Sobic008G118200--Sobic007G105100 Sobic002G045600--Sobic003G408600 Sobic009G027300 Sobic009G027300 Sobic002G045600--Sobic009G027300 Sobic002G045600--Sobic009G044800 Sobic002G045600--Sobic007G163100 Sobic003G360400 Sobic003G360400 Sobic002G045600--Sobic003G360400 Sobic001G313700 Sobic001G313700 Sobic002G045600--Sobic001G313700 Sobic004G200200 Sobic004G200200 Sobic002G045600--Sobic004G200200 Sobic002G045600--Sobic001G207000 Sobic002G045600--Sobic003G422500 Sobic008G098900 Sobic008G098900 Sobic001G117200--Sobic008G098900 Sobic001G117200--Sobic003G408600 Sobic002G430000 Sobic002G430000 Sobic001G117200--Sobic002G430000 Sobic001G117200--Sobic001G540400 Sobic001G137000 Sobic001G137000 Sobic001G117200--Sobic001G137000 Sobic001G117200--Sobic004G113400 Sobic001G542500 Sobic001G542500 Sobic001G117200--Sobic001G542500 Sobic001G117200--Sobic001G058700 Sobic008G092600 Sobic008G092600 Sobic001G117200--Sobic008G092600 Sobic003G072200--Sobic002G397500 Sobic007G098500 Sobic007G098500 Sobic003G072200--Sobic007G098500 Sobic007G062800 Sobic007G062800 Sobic003G072200--Sobic007G062800 Sobic003G233400 Sobic003G233400 Sobic003G072200--Sobic003G233400 Sobic009G084900 Sobic009G084900 Sobic003G072200--Sobic009G084900 Sobic003G072200--Sobic008G098900 Sobic003G072200--Sobic005G112300 Sobic001G347500 Sobic001G347500 Sobic003G072200--Sobic001G347500 Sobic002G133300 Sobic002G133300 Sobic003G072200--Sobic002G133300 Sobic002G411600 Sobic002G411600 Sobic003G422500--Sobic002G411600 Sobic009G191000 Sobic009G191000 Sobic003G422500--Sobic009G191000 Sobic003G422500--Sobic001G289600 Sobic009G165700 Sobic009G165700 Sobic003G422500--Sobic009G165700 Sobic002G008900 Sobic002G008900 Sobic003G422500--Sobic002G008900 Sobic004G034900 Sobic004G034900 Sobic003G422500--Sobic004G034900 Sobic003G422500--Sobic001G289800 Sobic003G422500--Sobic001G540400 Sobic008G132600 Sobic008G132600 Sobic003G422500--Sobic008G132600 Sobic001G540400--Sobic001G289600 Sobic001G540400--Sobic003G408600 Sobic001G540400--Sobic007G062800 Sobic001G540400--Sobic005G008800 Sobic001G540400--Sobic004G034900 Sobic001G540400--Sobic005G112300 Sobic001G540400--Sobic003G422500 Sobic001G540400--Sobic002G397500 Sobic001G540400--Sobic010G112100 Sobic001G289800--Sobic001G289600 Sobic001G289800--Sobic003G422500 Sobic001G194200 Sobic001G194200 Sobic001G289800--Sobic001G194200 Sobic004G291900 Sobic004G291900 Sobic001G289800--Sobic004G291900 Sobic001G289800--Sobic004G034900 Sobic001G002000 Sobic001G002000 Sobic001G289800--Sobic001G002000 Sobic010G010700 Sobic010G010700 Sobic001G289800--Sobic010G010700 Sobic001G289800--Sobic007G062800 Sobic005G001000 Sobic005G001000 Sobic001G289800--Sobic005G001000 Sobic009G010600 Sobic009G010600 Sobic004G113400--Sobic009G010600 Sobic004G113400--Sobic003G408600 Sobic004G329400 Sobic004G329400 Sobic004G113400--Sobic004G329400 Sobic004G113400--Sobic001G058700 Sobic008G099800 Sobic008G099800 Sobic004G113400--Sobic008G099800 Sobic001G178700 Sobic001G178700 Sobic004G113400--Sobic001G178700 Sobic004G113400--Sobic001G117200 Sobic001G534800 Sobic001G534800 Sobic004G113400--Sobic001G534800 Sobic004G113400--Sobic002G430000
Octagon: transcription factors


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