Gene annotation
Transcriptome id Sobic.010G004100.1,Sobic.010G004100.2
Synonym Sb10g000570
Functional annotation expressed protein
UniProt A0A1W0VQY5 , A0A1W0VQY3
Pfam PF12932 PF12931
Panther DB PTHR13402 PTHR13402:SF12
NCBI CDD KOG1913; Regucalcin gene promoter region-related protein (RGPR)
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G47490 : RGPR-related
RAP-DB (Rice) LOC_Os06g01650.1 : expressed protein
MaizeGDB (Corn) Zm00025a035084 , Zm00025a041165 , Zm00025a018643
Brachypodium PNT76722 , KQK20046 , KQJ92800 , KQK20047
Barley HORVU6Hr1G003500.1 , HORVU6Hr1G003500.2 , HORVU6Hr1G003500.3 , HORVU6Hr1G003500.4 , HORVU6Hr1G003500.5 , HORVU6Hr1G003500.6 , HORVU6Hr1G003500.7 , HORVU7Hr1G001370.1 , HORVU7Hr1G001370.2 , HORVU7Hr1G001370.3 , HORVU7Hr1G001370.5 , HORVU7Hr1G001370.6 , HORVU7Hr1G001370.7
Wheat TraesCS6D02G022300 , TraesCS7A02G015000 , TraesCS7A02G015000 , TraesCS7D02G012000 , TraesCS4A02G481400 , TraesCS7D02G012000 , TraesCS6A02G019400 , TraesCS6B02G026100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G163100 expressed protein K14972: PAXIP1, PAX-interacting protein 1
2 Sobic.001G117200 AGC_AGC_other_GWLd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
3 Sobic.002G137400 protein binding protein, putative, expressed -
4 Sobic.003G337300 HEAT repeat family protein, putative, expressed K08876: SCY1-like protein 1
5 Sobic.003G104000 expressed protein K15133: mediator of RNA polymerase II transcription subunit 17
6 Sobic.004G113400 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
7 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
8 Sobic.004G004300 expressed protein -
9 Sobic.001G415300 "domain confirmed by Pfam database, expressed in leaf, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@ABC transporter, ATP-binding protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
10 Sobic.008G099800 expressed protein -
11 Sobic.002G430000 expressed protein K08518: STXBP5, syntaxin-binding protein 5
12 Sobic.006G126100 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
13 Sobic.003G332500 EAP30/Vps36 family domain containing protein, expressed K12190: VPS36, ESCRT-II complex subunit VPS36
14 Sobic.004G277200 GPI transamidase subunit PIG-U domain containing protein, expressed K05293: GPI-anchor transamidase subunit U
15 Sobic.006G280000 transportin-2, putative, expressed K18752: TNPO1, IPO2, transportin-1
16 Sobic.002G256700 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11844: ubiquitin carboxyl-terminal hydrolase 16/45
17 Sobic.002G366400 histone deacetylase, putative, expressed K11407: histone deacetylase 6
18 Sobic.006G012500 protein transport protein Sec24-like, putative, expressed K14007: protein transport protein SEC24
19 Sobic.007G225100 ZOS8-09 - C2H2 zinc finger protein, expressed -
20 Sobic.001G534800 Putative ortholog gene associated with awn presence/absence in wheat(PubMedID : 25237112)@adapitin protein, putative, expressed K11824: AP-2 complex subunit alpha


Gene co-expression network
sample Sobic010G004100 Sobic010G004100 Sobic007G163100 Sobic007G163100 Sobic010G004100--Sobic007G163100 Sobic001G117200 Sobic001G117200 Sobic010G004100--Sobic001G117200 Sobic002G137400 Sobic002G137400 Sobic010G004100--Sobic002G137400 Sobic003G337300 Sobic003G337300 Sobic010G004100--Sobic003G337300 Sobic003G104000 Sobic003G104000 Sobic010G004100--Sobic003G104000 Sobic004G113400 Sobic004G113400 Sobic010G004100--Sobic004G113400 Sobic003G408600 Sobic003G408600 Sobic010G004100--Sobic003G408600 Sobic004G004300 Sobic004G004300 Sobic010G004100--Sobic004G004300 Sobic001G415300 Sobic001G415300 Sobic010G004100--Sobic001G415300 Sobic007G163100--Sobic003G408600 Sobic008G118200 Sobic008G118200 Sobic007G163100--Sobic008G118200 Sobic002G045600 Sobic002G045600 Sobic007G163100--Sobic002G045600 Sobic007G163100--Sobic001G117200 Sobic003G072200 Sobic003G072200 Sobic007G163100--Sobic003G072200 Sobic003G422500 Sobic003G422500 Sobic007G163100--Sobic003G422500 Sobic001G540400 Sobic001G540400 Sobic007G163100--Sobic001G540400 Sobic001G289800 Sobic001G289800 Sobic007G163100--Sobic001G289800 Sobic007G163100--Sobic004G113400 Sobic008G098900 Sobic008G098900 Sobic001G117200--Sobic008G098900 Sobic001G117200--Sobic003G408600 Sobic002G430000 Sobic002G430000 Sobic001G117200--Sobic002G430000 Sobic001G117200--Sobic001G540400 Sobic001G137000 Sobic001G137000 Sobic001G117200--Sobic001G137000 Sobic001G117200--Sobic004G113400 Sobic001G542500 Sobic001G542500 Sobic001G117200--Sobic001G542500 Sobic001G058700 Sobic001G058700 Sobic001G117200--Sobic001G058700 Sobic008G092600 Sobic008G092600 Sobic001G117200--Sobic008G092600 Sobic002G137400--Sobic001G415300 Sobic004G002100 Sobic004G002100 Sobic002G137400--Sobic004G002100 Sobic002G137400--Sobic010G004100 Sobic002G137400--Sobic003G337300 Sobic003G331400 Sobic003G331400 Sobic002G137400--Sobic003G331400 Sobic001G281100 Sobic001G281100 Sobic002G137400--Sobic001G281100 Sobic002G137400--Sobic004G004300 Sobic001G534800 Sobic001G534800 Sobic002G137400--Sobic001G534800 Sobic002G031100 Sobic002G031100 Sobic002G137400--Sobic002G031100 Sobic003G337300--Sobic003G104000 Sobic003G337300--Sobic010G004100 Sobic003G337300--Sobic002G137400 Sobic004G039600 Sobic004G039600 Sobic003G337300--Sobic004G039600 Sobic006G131000 Sobic006G131000 Sobic003G337300--Sobic006G131000 Sobic004G344901 Sobic004G344901 Sobic003G337300--Sobic004G344901 Sobic004G322400 Sobic004G322400 Sobic003G337300--Sobic004G322400 Sobic003G332500 Sobic003G332500 Sobic003G337300--Sobic003G332500 Sobic003G337300--Sobic001G415300 Sobic003G104000--Sobic003G337300 Sobic002G256700 Sobic002G256700 Sobic003G104000--Sobic002G256700 Sobic006G126100 Sobic006G126100 Sobic003G104000--Sobic006G126100 Sobic001G251100 Sobic001G251100 Sobic003G104000--Sobic001G251100 Sobic002G142900 Sobic002G142900 Sobic003G104000--Sobic002G142900 Sobic002G295500 Sobic002G295500 Sobic003G104000--Sobic002G295500 Sobic004G277200 Sobic004G277200 Sobic003G104000--Sobic004G277200 Sobic004G131300 Sobic004G131300 Sobic003G104000--Sobic004G131300 Sobic006G261400 Sobic006G261400 Sobic003G104000--Sobic006G261400 Sobic009G010600 Sobic009G010600 Sobic004G113400--Sobic009G010600 Sobic004G113400--Sobic003G408600 Sobic004G329400 Sobic004G329400 Sobic004G113400--Sobic004G329400 Sobic004G113400--Sobic001G058700 Sobic008G099800 Sobic008G099800 Sobic004G113400--Sobic008G099800 Sobic001G178700 Sobic001G178700 Sobic004G113400--Sobic001G178700 Sobic004G113400--Sobic001G117200 Sobic004G113400--Sobic001G534800 Sobic004G113400--Sobic002G430000 Sobic003G408600--Sobic001G540400 Sobic005G008800 Sobic005G008800 Sobic003G408600--Sobic005G008800 Sobic002G397500 Sobic002G397500 Sobic003G408600--Sobic002G397500 Sobic005G112300 Sobic005G112300 Sobic003G408600--Sobic005G112300 Sobic003G408600--Sobic007G163100 Sobic010G112100 Sobic010G112100 Sobic003G408600--Sobic010G112100 Sobic003G408600--Sobic001G058700 Sobic002G071500 Sobic002G071500 Sobic003G408600--Sobic002G071500 Sobic003G408600--Sobic002G045600 Sobic004G004300--Sobic001G281100 Sobic005G026200 Sobic005G026200 Sobic004G004300--Sobic005G026200 Sobic004G004300--Sobic001G534800 Sobic004G004300--Sobic006G126100 Sobic004G004300--Sobic001G117200 Sobic004G004200 Sobic004G004200 Sobic004G004300--Sobic004G004200 Sobic004G004300--Sobic001G415300 Sobic010G275500 Sobic010G275500 Sobic004G004300--Sobic010G275500 Sobic005G003300 Sobic005G003300 Sobic004G004300--Sobic005G003300 Sobic001G415300--Sobic002G137400 Sobic001G415300--Sobic004G004300 Sobic001G415300--Sobic001G281100 Sobic001G085300 Sobic001G085300 Sobic001G415300--Sobic001G085300 Sobic001G415300--Sobic003G337300 Sobic001G415300--Sobic006G126100 Sobic001G415300--Sobic001G534800 Sobic001G415300--Sobic004G002100 Sobic001G457900 Sobic001G457900 Sobic001G415300--Sobic001G457900
Octagon: transcription factors


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