Gene annotation
Transcriptome id Sobic.001G534800.1
Synonym Sb01g049780
Functional annotation Putative ortholog gene associated with awn presence/absence in wheat (PubMedID : 25237112)
adapitin protein, putative, expressed
UniProt A0A1B6QR39
Pfam PF02883 PF02296 PF01602
Panther DB PTHR22780 PTHR22780:SF4
NCBI CDD -
KEGG Orthology K11824; AP-2 complex subunit alpha
Gene Ontology GO:0016192; vesicle-mediated transport GO:0006886intracellular protein transport


Orthologs (automatic annotation)
TAIR AT5G22780 : Adaptor protein complex AP-2, alpha subunit
RAP-DB (Rice) LOC_Os03g02150.1 : adapitin protein, putative, expressed
MaizeGDB (Corn) Zm00025a053534 , Zm00025a050674 , Zm00025a000193
Brachypodium KQK24039 , PNT78335
Barley HORVU4Hr1G089310.5 , HORVU4Hr1G089310.28 , HORVU4Hr1G089310.24 , HORVU4Hr1G089310.25 , HORVU4Hr1G089310.26 , HORVU4Hr1G089310.27 , HORVU4Hr1G089310.21 , HORVU4Hr1G089310.22 , HORVU4Hr1G089310.23 , HORVU4Hr1G089310.11 , HORVU4Hr1G089310.10 , HORVU4Hr1G089310.13 , HORVU4Hr1G089310.12 , HORVU4Hr1G089310.15 , HORVU4Hr1G089310.14 , HORVU4Hr1G089310.17 , HORVU4Hr1G089310.16 , HORVU4Hr1G089310.19 , HORVU4Hr1G089310.18 , HORVU4Hr1G089310.20 , HORVU4Hr1G089310.4 , HORVU4Hr1G089310.7 , HORVU4Hr1G089310.6 , HORVU4Hr1G089310.1 , HORVU4Hr1G089310.3 , HORVU4Hr1G089310.2 , HORVU4Hr1G089310.9 , HORVU4Hr1G089310.8
Wheat TraesCS5A02G557300 , TraesCS4B02G395700 , TraesCS4B02G395700 , TraesCS4B02G395700
Populus -


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cDNA sequences
Sobic.001G534800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G281100 START domain containing protein, expressed -
2 Sobic.008G099800 expressed protein -
3 Sobic.004G004300 expressed protein -
4 Sobic.004G135400 expressed protein -
5 Sobic.005G003300 clathrin heavy chain, putative, expressed K04646: clathrin heavy chain
6 Sobic.005G026200 HEAT repeat family protein, putative, expressed K11886: proteasome component ECM29
7 Sobic.006G012500 protein transport protein Sec24-like, putative, expressed K14007: protein transport protein SEC24
8 Sobic.004G113400 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
9 Sobic.001G065000 expressed protein -
10 Sobic.001G426600 SH3 domain containing protein, expressed -
11 Sobic.006G126100 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
12 Sobic.001G347500 expressed protein -
13 Sobic.010G053800 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1
14 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
15 Sobic.010G275500 EF hand family protein, putative, expressed -
16 Sobic.003G072200 zinc finger protein, putative, expressed K11978: E3 ubiquitin-protein ligase UBR3
17 Sobic.004G051200 WD domain containing protein, putative, expressed -
18 Sobic.003G229500 ZOS12-01 - C2H2 zinc finger protein, expressed -
19 Sobic.004G072100 centromere/kinetochore protein zw10, putative, expressed K11578: ZW10, protein transport protein DSL1/ZW10
20 Sobic.004G269200 protein kinase, putative, expressed K18670: dual specificity protein kinase YAK1


Gene co-expression network
sample Sobic001G534800 Sobic001G534800 Sobic001G281100 Sobic001G281100 Sobic001G534800--Sobic001G281100 Sobic008G099800 Sobic008G099800 Sobic001G534800--Sobic008G099800 Sobic004G004300 Sobic004G004300 Sobic001G534800--Sobic004G004300 Sobic004G135400 Sobic004G135400 Sobic001G534800--Sobic004G135400 Sobic005G003300 Sobic005G003300 Sobic001G534800--Sobic005G003300 Sobic005G026200 Sobic005G026200 Sobic001G534800--Sobic005G026200 Sobic006G012500 Sobic006G012500 Sobic001G534800--Sobic006G012500 Sobic004G113400 Sobic004G113400 Sobic001G534800--Sobic004G113400 Sobic001G065000 Sobic001G065000 Sobic001G534800--Sobic001G065000 Sobic001G281100--Sobic001G534800 Sobic001G281100--Sobic004G004300 Sobic001G281100--Sobic001G065000 Sobic001G281100--Sobic005G026200 Sobic001G281100--Sobic008G099800 Sobic003G229500 Sobic003G229500 Sobic001G281100--Sobic003G229500 Sobic001G281100--Sobic006G012500 Sobic004G072100 Sobic004G072100 Sobic001G281100--Sobic004G072100 Sobic010G275500 Sobic010G275500 Sobic001G281100--Sobic010G275500 Sobic008G099800--Sobic006G012500 Sobic008G099800--Sobic001G534800 Sobic008G099800--Sobic004G135400 Sobic001G347500 Sobic001G347500 Sobic008G099800--Sobic001G347500 Sobic008G099800--Sobic001G281100 Sobic008G099800--Sobic004G113400 Sobic004G039600 Sobic004G039600 Sobic008G099800--Sobic004G039600 Sobic003G072200 Sobic003G072200 Sobic008G099800--Sobic003G072200 Sobic008G099800--Sobic001G065000 Sobic004G004300--Sobic001G281100 Sobic004G004300--Sobic005G026200 Sobic004G004300--Sobic001G534800 Sobic006G126100 Sobic006G126100 Sobic004G004300--Sobic006G126100 Sobic001G117200 Sobic001G117200 Sobic004G004300--Sobic001G117200 Sobic004G004200 Sobic004G004200 Sobic004G004300--Sobic004G004200 Sobic001G415300 Sobic001G415300 Sobic004G004300--Sobic001G415300 Sobic004G004300--Sobic010G275500 Sobic004G004300--Sobic005G003300 Sobic004G135400--Sobic001G534800 Sobic006G208500 Sobic006G208500 Sobic004G135400--Sobic006G208500 Sobic004G135400--Sobic008G099800 Sobic004G277200 Sobic004G277200 Sobic004G135400--Sobic004G277200 Sobic004G135400--Sobic005G003300 Sobic008G004600 Sobic008G004600 Sobic004G135400--Sobic008G004600 Sobic004G135400--Sobic006G126100 Sobic002G042600 Sobic002G042600 Sobic004G135400--Sobic002G042600 Sobic009G245800 Sobic009G245800 Sobic004G135400--Sobic009G245800 Sobic005G003300--Sobic001G534800 Sobic005G003300--Sobic005G026200 Sobic005G003300--Sobic004G135400 Sobic005G003300--Sobic004G004300 Sobic005G003300--Sobic008G004600 Sobic005G003300--Sobic006G126100 Sobic008G003700 Sobic008G003700 Sobic005G003300--Sobic008G003700 Sobic005G003300--Sobic008G099800 Sobic005G003300--Sobic004G039600 Sobic005G026200--Sobic004G004300 Sobic005G026200--Sobic001G534800 Sobic005G026200--Sobic001G281100 Sobic005G026200--Sobic005G003300 Sobic002G397500 Sobic002G397500 Sobic005G026200--Sobic002G397500 Sobic010G053800 Sobic010G053800 Sobic005G026200--Sobic010G053800 Sobic005G026200--Sobic003G072200 Sobic005G026200--Sobic001G065000 Sobic005G026200--Sobic004G113400 Sobic006G012500--Sobic004G039600 Sobic006G012500--Sobic010G053800 Sobic006G012500--Sobic008G099800 Sobic006G012500--Sobic010G275500 Sobic006G012500--Sobic004G072100 Sobic006G012500--Sobic001G534800 Sobic006G012500--Sobic001G065000 Sobic007G132100 Sobic007G132100 Sobic006G012500--Sobic007G132100 Sobic007G218000 Sobic007G218000 Sobic006G012500--Sobic007G218000 Sobic009G010600 Sobic009G010600 Sobic004G113400--Sobic009G010600 Sobic003G408600 Sobic003G408600 Sobic004G113400--Sobic003G408600 Sobic004G329400 Sobic004G329400 Sobic004G113400--Sobic004G329400 Sobic001G058700 Sobic001G058700 Sobic004G113400--Sobic001G058700 Sobic004G113400--Sobic008G099800 Sobic001G178700 Sobic001G178700 Sobic004G113400--Sobic001G178700 Sobic004G113400--Sobic001G117200 Sobic004G113400--Sobic001G534800 Sobic002G430000 Sobic002G430000 Sobic004G113400--Sobic002G430000 Sobic001G114000 Sobic001G114000 Sobic001G065000--Sobic001G114000 Sobic001G065000--Sobic001G281100 Sobic001G065000--Sobic006G012500 Sobic001G065000--Sobic001G534800 Sobic005G118600 Sobic005G118600 Sobic001G065000--Sobic005G118600 Sobic001G065000--Sobic008G099800 Sobic003G093800 Sobic003G093800 Sobic001G065000--Sobic003G093800 Sobic006G037700 Sobic006G037700 Sobic001G065000--Sobic006G037700 Sobic001G065000--Sobic003G229500
Octagon: transcription factors


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