Gene annotation
Transcriptome id Sobic.005G026200.1
Synonym Sb05g002180
Functional annotation HEAT repeat family protein, putative, expressed
UniProt A0A1B6PPT9
Pfam PF13001
Panther DB PTHR23346 PTHR23346:SF19
NCBI CDD -
KEGG Orthology K11886; proteasome component ECM29
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G26780 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os11g04220.1 : HEAT repeat family protein, putative, expressed
MaizeGDB (Corn) Zm00025a033408
Brachypodium KQJ92416 , KQJ92417
Barley HORVU5Hr1G044400.7 , HORVU5Hr1G044400.32 , HORVU5Hr1G044400.30 , HORVU5Hr1G044400.28 , HORVU5Hr1G044400.29 , HORVU5Hr1G044400.26 , HORVU5Hr1G044400.27 , HORVU5Hr1G044400.24 , HORVU5Hr1G044400.25 , HORVU5Hr1G044400.22 , HORVU5Hr1G044400.23 , HORVU5Hr1G044400.20 , HORVU5Hr1G044400.21 , HORVU5Hr1G044400.9 , HORVU5Hr1G044400.8 , HORVU5Hr1G044400.6 , HORVU5Hr1G044400.5 , HORVU5Hr1G044400.4 , HORVU5Hr1G044400.3 , HORVU5Hr1G044400.2 , HORVU5Hr1G044400.1 , HORVU0Hr1G011050.1 , HORVU5Hr1G044400.17 , HORVU5Hr1G044400.16 , HORVU5Hr1G044400.15 , HORVU5Hr1G044400.14 , HORVU5Hr1G044400.13 , HORVU5Hr1G044400.12 , HORVU5Hr1G044400.11 , HORVU5Hr1G044400.10 , HORVU5Hr1G044400.19 , HORVU5Hr1G044400.18
Wheat TraesCS5A02G137600 , TraesCS5A02G137600 , TraesCS5B02G136300 , TraesCS5B02G136300 , TraesCS5D02G154400 , TraesCS5D02G154400 , TraesCS5D02G154400
Populus PNT56967 , PNT56968 , PNT56969 , PNT56970


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G004300 expressed protein -
2 Sobic.001G534800 Putative ortholog gene associated with awn presence/absence in wheat(PubMedID : 25237112)@adapitin protein, putative, expressed K11824: AP-2 complex subunit alpha
3 Sobic.001G281100 START domain containing protein, expressed -
4 Sobic.005G003300 clathrin heavy chain, putative, expressed K04646: clathrin heavy chain
5 Sobic.002G397500 SAC3/GANP family protein, expressed -
6 Sobic.010G053800 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1
7 Sobic.003G072200 zinc finger protein, putative, expressed K11978: E3 ubiquitin-protein ligase UBR3
8 Sobic.001G065000 expressed protein -
9 Sobic.004G113400 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
10 Sobic.001G347500 expressed protein -
11 Sobic.008G099800 expressed protein -
12 Sobic.004G358400 callose synthase-like enzyme(PubMedID : 25311645)@1,3-beta-glucan synthase component domain containing protein, expressed K11000: callose synthase
13 Sobic.009G010600 retinoblastoma-related protein-like, putative, expressed K04681: retinoblastoma-like protein 1
14 Sobic.010G275500 EF hand family protein, putative, expressed -
15 Sobic.006G012500 protein transport protein Sec24-like, putative, expressed K14007: protein transport protein SEC24
16 Sobic.001G117200 AGC_AGC_other_GWLd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
17 Sobic.003G422500 expressed protein -
18 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
19 Sobic.008G132600 expressed protein -
20 Sobic.001G058700 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2


Gene co-expression network
sample Sobic005G026200 Sobic005G026200 Sobic004G004300 Sobic004G004300 Sobic005G026200--Sobic004G004300 Sobic001G534800 Sobic001G534800 Sobic005G026200--Sobic001G534800 Sobic001G281100 Sobic001G281100 Sobic005G026200--Sobic001G281100 Sobic005G003300 Sobic005G003300 Sobic005G026200--Sobic005G003300 Sobic002G397500 Sobic002G397500 Sobic005G026200--Sobic002G397500 Sobic010G053800 Sobic010G053800 Sobic005G026200--Sobic010G053800 Sobic003G072200 Sobic003G072200 Sobic005G026200--Sobic003G072200 Sobic001G065000 Sobic001G065000 Sobic005G026200--Sobic001G065000 Sobic004G113400 Sobic004G113400 Sobic005G026200--Sobic004G113400 Sobic004G004300--Sobic001G281100 Sobic004G004300--Sobic005G026200 Sobic004G004300--Sobic001G534800 Sobic006G126100 Sobic006G126100 Sobic004G004300--Sobic006G126100 Sobic001G117200 Sobic001G117200 Sobic004G004300--Sobic001G117200 Sobic004G004200 Sobic004G004200 Sobic004G004300--Sobic004G004200 Sobic001G415300 Sobic001G415300 Sobic004G004300--Sobic001G415300 Sobic010G275500 Sobic010G275500 Sobic004G004300--Sobic010G275500 Sobic004G004300--Sobic005G003300 Sobic001G534800--Sobic001G281100 Sobic008G099800 Sobic008G099800 Sobic001G534800--Sobic008G099800 Sobic001G534800--Sobic004G004300 Sobic004G135400 Sobic004G135400 Sobic001G534800--Sobic004G135400 Sobic001G534800--Sobic005G003300 Sobic001G534800--Sobic005G026200 Sobic006G012500 Sobic006G012500 Sobic001G534800--Sobic006G012500 Sobic001G534800--Sobic004G113400 Sobic001G534800--Sobic001G065000 Sobic001G281100--Sobic001G534800 Sobic001G281100--Sobic004G004300 Sobic001G281100--Sobic001G065000 Sobic001G281100--Sobic005G026200 Sobic001G281100--Sobic008G099800 Sobic003G229500 Sobic003G229500 Sobic001G281100--Sobic003G229500 Sobic001G281100--Sobic006G012500 Sobic004G072100 Sobic004G072100 Sobic001G281100--Sobic004G072100 Sobic001G281100--Sobic010G275500 Sobic005G003300--Sobic001G534800 Sobic005G003300--Sobic005G026200 Sobic005G003300--Sobic004G135400 Sobic005G003300--Sobic004G004300 Sobic008G004600 Sobic008G004600 Sobic005G003300--Sobic008G004600 Sobic005G003300--Sobic006G126100 Sobic008G003700 Sobic008G003700 Sobic005G003300--Sobic008G003700 Sobic005G003300--Sobic008G099800 Sobic004G039600 Sobic004G039600 Sobic005G003300--Sobic004G039600 Sobic003G408600 Sobic003G408600 Sobic002G397500--Sobic003G408600 Sobic007G062800 Sobic007G062800 Sobic002G397500--Sobic007G062800 Sobic005G112300 Sobic005G112300 Sobic002G397500--Sobic005G112300 Sobic001G540400 Sobic001G540400 Sobic002G397500--Sobic001G540400 Sobic009G109200 Sobic009G109200 Sobic002G397500--Sobic009G109200 Sobic002G397500--Sobic003G072200 Sobic004G242400 Sobic004G242400 Sobic002G397500--Sobic004G242400 Sobic004G276400 Sobic004G276400 Sobic002G397500--Sobic004G276400 Sobic010G112100 Sobic010G112100 Sobic002G397500--Sobic010G112100 Sobic010G053800--Sobic006G012500 Sobic010G053800--Sobic010G275500 Sobic010G053800--Sobic004G072100 Sobic001G155000 Sobic001G155000 Sobic010G053800--Sobic001G155000 Sobic003G187500 Sobic003G187500 Sobic010G053800--Sobic003G187500 Sobic008G047800 Sobic008G047800 Sobic010G053800--Sobic008G047800 Sobic010G116600 Sobic010G116600 Sobic010G053800--Sobic010G116600 Sobic006G163800 Sobic006G163800 Sobic010G053800--Sobic006G163800 Sobic010G053800--Sobic004G039600 Sobic003G072200--Sobic002G397500 Sobic007G098500 Sobic007G098500 Sobic003G072200--Sobic007G098500 Sobic003G072200--Sobic007G062800 Sobic003G233400 Sobic003G233400 Sobic003G072200--Sobic003G233400 Sobic009G084900 Sobic009G084900 Sobic003G072200--Sobic009G084900 Sobic008G098900 Sobic008G098900 Sobic003G072200--Sobic008G098900 Sobic003G072200--Sobic005G112300 Sobic001G347500 Sobic001G347500 Sobic003G072200--Sobic001G347500 Sobic002G133300 Sobic002G133300 Sobic003G072200--Sobic002G133300 Sobic001G114000 Sobic001G114000 Sobic001G065000--Sobic001G114000 Sobic001G065000--Sobic001G281100 Sobic001G065000--Sobic006G012500 Sobic001G065000--Sobic001G534800 Sobic005G118600 Sobic005G118600 Sobic001G065000--Sobic005G118600 Sobic001G065000--Sobic008G099800 Sobic003G093800 Sobic003G093800 Sobic001G065000--Sobic003G093800 Sobic006G037700 Sobic006G037700 Sobic001G065000--Sobic006G037700 Sobic001G065000--Sobic003G229500 Sobic009G010600 Sobic009G010600 Sobic004G113400--Sobic009G010600 Sobic004G113400--Sobic003G408600 Sobic004G329400 Sobic004G329400 Sobic004G113400--Sobic004G329400 Sobic001G058700 Sobic001G058700 Sobic004G113400--Sobic001G058700 Sobic004G113400--Sobic008G099800 Sobic001G178700 Sobic001G178700 Sobic004G113400--Sobic001G178700 Sobic004G113400--Sobic001G117200 Sobic004G113400--Sobic001G534800 Sobic002G430000 Sobic002G430000 Sobic004G113400--Sobic002G430000
Octagon: transcription factors


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