Gene annotation
Transcriptome id Sobic.009G010600.3,Sobic.009G010600.1,Sobic.009G010600.2
Synonym RB, Sb09g001110, RBR1, RBR, RB1, ATRBR1
Functional annotation retinoblastoma-related protein-like, putative, expressed
UniProt A0A1B6P5T7 , A0A1B6P5X2
Pfam PF11934 PF01857 PF01858 PF08934 PF11934 PF01857 PF01858
Panther DB PTHR13742 PTHR13742:SF22
NCBI CDD KOG1010; Rb (Retinoblastoma tumor suppressor)-related protein
KEGG Orthology K04681; retinoblastoma-like protein 1
Gene Ontology GO:0005634; nucleus GO:0006357regulation of transcription by RNA polymerase II


Orthologs (automatic annotation)
TAIR AT3G12280 : retinoblastoma-related 1
RAP-DB (Rice) LOC_Os11g32900.1 : retinoblastoma-related protein-like, putative, expressed
MaizeGDB (Corn) Zm00025a015698 , Zm00025a033575
Brachypodium KQJ88348
Barley HORVU4Hr1G039890.9 , HORVU4Hr1G039890.8 , HORVU4Hr1G039890.5 , HORVU4Hr1G039890.4 , HORVU4Hr1G039890.7 , HORVU4Hr1G039890.6 , HORVU4Hr1G039890.1 , HORVU4Hr1G039890.3 , HORVU4Hr1G039890.2 , HORVU4Hr1G039890.11 , HORVU4Hr1G039890.10 , HORVU4Hr1G039890.13 , HORVU4Hr1G039890.12 , HORVU4Hr1G039890.15 , HORVU4Hr1G039890.14 , HORVU4Hr1G039890.16
Wheat TraesCS4D02G159600 , TraesCS4D02G159600 , TraesCS4A02G143200 , TraesCS4A02G143200 , TraesCS4A02G143200 , TraesCS4A02G143200 , TraesCS4B02G162200 , TraesCS4A02G143200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G113400 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
2 Sobic.001G474600 calmodulin-binding transcription activator, putative, expressed -
3 Sobic.001G178700 NBS-LRR disease resistance protein, putative, expressed -
4 Sobic.001G058700 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
5 Sobic.001G281100 START domain containing protein, expressed -
6 Sobic.004G355000 SAC9, putative, expressed -
7 Sobic.004G329400 formin, putative, expressed -
8 Sobic.002G427050 - -
9 Sobic.005G026200 HEAT repeat family protein, putative, expressed K11886: proteasome component ECM29
10 Sobic.009G027300 MYB family transcription factor, putative, expressed K04650: NCOR1, nuclear receptor co-repressor 1
11 Sobic.001G050200 expressed protein -
12 Sobic.001G291000 disease resistance protein RPM1, putative, expressed K13457: RPM1, disease resistance protein RPM1
13 Sobic.001G534800 Putative ortholog gene associated with awn presence/absence in wheat(PubMedID : 25237112)@adapitin protein, putative, expressed K11824: AP-2 complex subunit alpha
14 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
15 Sobic.004G339100 endoribonuclease, putative, expressed K06927: diphthine-ammonia ligase
16 Sobic.004G200200 joka2, putative, expressed K17987: next to BRCA1 gene 1 protein
17 Sobic.002G419800 structural constituent of ribosome, putative, expressed -
18 Sobic.001G280900 expressed protein -
19 Sobic.001G071400 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
20 Sobic.004G269200 protein kinase, putative, expressed K18670: dual specificity protein kinase YAK1


Gene co-expression network
sample Sobic009G010600 Sobic009G010600 Sobic004G113400 Sobic004G113400 Sobic009G010600--Sobic004G113400 Sobic001G474600 Sobic001G474600 Sobic009G010600--Sobic001G474600 Sobic001G178700 Sobic001G178700 Sobic009G010600--Sobic001G178700 Sobic001G058700 Sobic001G058700 Sobic009G010600--Sobic001G058700 Sobic001G281100 Sobic001G281100 Sobic009G010600--Sobic001G281100 Sobic004G355000 Sobic004G355000 Sobic009G010600--Sobic004G355000 Sobic004G329400 Sobic004G329400 Sobic009G010600--Sobic004G329400 Sobic002G427050 Sobic002G427050 Sobic009G010600--Sobic002G427050 Sobic005G026200 Sobic005G026200 Sobic009G010600--Sobic005G026200 Sobic004G113400--Sobic009G010600 Sobic003G408600 Sobic003G408600 Sobic004G113400--Sobic003G408600 Sobic004G113400--Sobic004G329400 Sobic004G113400--Sobic001G058700 Sobic008G099800 Sobic008G099800 Sobic004G113400--Sobic008G099800 Sobic004G113400--Sobic001G178700 Sobic001G117200 Sobic001G117200 Sobic004G113400--Sobic001G117200 Sobic001G534800 Sobic001G534800 Sobic004G113400--Sobic001G534800 Sobic002G430000 Sobic002G430000 Sobic004G113400--Sobic002G430000 Sobic003G280800 Sobic003G280800 Sobic001G474600--Sobic003G280800 Sobic009G166300 Sobic009G166300 Sobic001G474600--Sobic009G166300 Sobic001G125200 Sobic001G125200 Sobic001G474600--Sobic001G125200 Sobic003G372700 Sobic003G372700 Sobic001G474600--Sobic003G372700 Sobic007G217000 Sobic007G217000 Sobic001G474600--Sobic007G217000 Sobic007G096000 Sobic007G096000 Sobic001G474600--Sobic007G096000 Sobic007G207000 Sobic007G207000 Sobic001G474600--Sobic007G207000 Sobic009G191000 Sobic009G191000 Sobic001G474600--Sobic009G191000 Sobic001G241200 Sobic001G241200 Sobic001G474600--Sobic001G241200 Sobic001G178700--Sobic004G113400 Sobic001G178700--Sobic009G010600 Sobic001G248300 Sobic001G248300 Sobic001G178700--Sobic001G248300 Sobic001G291000 Sobic001G291000 Sobic001G178700--Sobic001G291000 Sobic001G178700--Sobic001G474600 Sobic001G146800 Sobic001G146800 Sobic001G178700--Sobic001G146800 Sobic010G112000 Sobic010G112000 Sobic001G178700--Sobic010G112000 Sobic007G172400 Sobic007G172400 Sobic001G178700--Sobic007G172400 Sobic001G178700--Sobic004G329400 Sobic001G058700--Sobic003G408600 Sobic001G058700--Sobic007G172400 Sobic001G050600 Sobic001G050600 Sobic001G058700--Sobic001G050600 Sobic007G062800 Sobic007G062800 Sobic001G058700--Sobic007G062800 Sobic001G540400 Sobic001G540400 Sobic001G058700--Sobic001G540400 Sobic005G008800 Sobic005G008800 Sobic001G058700--Sobic005G008800 Sobic004G347400 Sobic004G347400 Sobic001G058700--Sobic004G347400 Sobic005G028600 Sobic005G028600 Sobic001G058700--Sobic005G028600 Sobic001G219900 Sobic001G219900 Sobic001G058700--Sobic001G219900 Sobic001G281100--Sobic001G534800 Sobic004G004300 Sobic004G004300 Sobic001G281100--Sobic004G004300 Sobic001G065000 Sobic001G065000 Sobic001G281100--Sobic001G065000 Sobic001G281100--Sobic005G026200 Sobic001G281100--Sobic008G099800 Sobic003G229500 Sobic003G229500 Sobic001G281100--Sobic003G229500 Sobic006G012500 Sobic006G012500 Sobic001G281100--Sobic006G012500 Sobic004G072100 Sobic004G072100 Sobic001G281100--Sobic004G072100 Sobic010G275500 Sobic010G275500 Sobic001G281100--Sobic010G275500 Sobic001G207400 Sobic001G207400 Sobic004G355000--Sobic001G207400 Sobic004G355000--Sobic002G430000 Sobic004G355000--Sobic001G248300 Sobic005G001000 Sobic005G001000 Sobic004G355000--Sobic005G001000 Sobic004G355000--Sobic004G329400 Sobic005G157000 Sobic005G157000 Sobic004G355000--Sobic005G157000 Sobic003G322700 Sobic003G322700 Sobic004G355000--Sobic003G322700 Sobic004G355000--Sobic004G113400 Sobic004G355000--Sobic009G010600 Sobic004G329400--Sobic004G113400 Sobic009G027300 Sobic009G027300 Sobic004G329400--Sobic009G027300 Sobic004G329400--Sobic005G157000 Sobic004G329400--Sobic001G058700 Sobic004G329400--Sobic004G355000 Sobic004G269200 Sobic004G269200 Sobic004G329400--Sobic004G269200 Sobic007G024700 Sobic007G024700 Sobic004G329400--Sobic007G024700 Sobic004G329400--Sobic007G172400 Sobic004G329400--Sobic003G408600 Sobic002G427050--Sobic009G010600 Sobic002G340100 Sobic002G340100 Sobic002G427050--Sobic002G340100 Sobic001G050200 Sobic001G050200 Sobic002G427050--Sobic001G050200 Sobic001G390800 Sobic001G390800 Sobic002G427050--Sobic001G390800 Sobic002G315200 Sobic002G315200 Sobic002G427050--Sobic002G315200 Sobic007G060201 Sobic007G060201 Sobic002G427050--Sobic007G060201 Sobic001G107600 Sobic001G107600 Sobic002G427050--Sobic001G107600 Sobic001G137100 Sobic001G137100 Sobic002G427050--Sobic001G137100 Sobic004G091100 Sobic004G091100 Sobic002G427050--Sobic004G091100 Sobic005G026200--Sobic004G004300 Sobic005G026200--Sobic001G534800 Sobic005G026200--Sobic001G281100 Sobic005G003300 Sobic005G003300 Sobic005G026200--Sobic005G003300 Sobic002G397500 Sobic002G397500 Sobic005G026200--Sobic002G397500 Sobic010G053800 Sobic010G053800 Sobic005G026200--Sobic010G053800 Sobic003G072200 Sobic003G072200 Sobic005G026200--Sobic003G072200 Sobic005G026200--Sobic001G065000 Sobic005G026200--Sobic004G113400
Octagon: transcription factors


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