Gene annotation
Transcriptome id Sobic.001G050200.2
Synonym Sb01g004600, EXO84B
Functional annotation expressed protein
UniProt A0A1Z5S4C7
Pfam PF16528 PF08700
Panther DB PTHR21426 PTHR21426:SF14
NCBI CDD KOG2215; Exocyst complex subunit
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G49830 : exocyst complex component 84B
RAP-DB (Rice) LOC_Os07g10110.1 : expressed protein
MaizeGDB (Corn) Zm00025a026085 , Zm00025a003582 , Zm00025a045319 , Zm00025a016532 , Zm00025a006932 , Zm00025a020244 , Zm00025a016017
Brachypodium KQK20447 , KQK12616 , KQK12615
Barley HORVU2Hr1G099060.1 , HORVU5Hr1G109160.2 , HORVU5Hr1G109160.1 , HORVU2Hr1G052050.2 , HORVU2Hr1G052050.4 , HORVU2Hr1G052050.5 , HORVU2Hr1G052050.6 , HORVU5Hr1G109160.3 , HORVU2Hr1G052050.9
Wheat TraesCS2A02G244100 , TraesCS5D02G463900 , TraesCS5D02G463900 , TraesCS5D02G463900 , TraesCS2D02G242400 , TraesCS2D02G242400 , TraesCS2D02G242400 , TraesCS5B02G462100 , TraesCS5A02G453100 , TraesCS5A02G453100 , TraesCS5B02G462100 , TraesCS2B02G263000 , TraesCS2B02G263000 , TraesCS2B02G263000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G050200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G419800 structural constituent of ribosome, putative, expressed -
2 Sobic.003G422500 expressed protein -
3 Sobic.009G027300 MYB family transcription factor, putative, expressed K04650: NCOR1, nuclear receptor co-repressor 1
4 Sobic.003G247300 protein of unknown function DUF1296 domain containing protein, expressed -
5 Sobic.009G191000 MATH domain containing protein, expressed -
6 Sobic.007G075400 expressed protein -
7 Sobic.004G269200 protein kinase, putative, expressed K18670: dual specificity protein kinase YAK1
8 Sobic.004G331100 WD domain and HEAT domain containing protein, putative, expressed K08333: PIK3R4, phosphoinositide-3-kinase, regulatory subunit 4
9 Sobic.003G101400 transcriptional repressor, putative, expressed K11644: paired amphipathic helix protein Sin3a
10 Sobic.002G045600 transcriptional corepressor SEUSS, putative, expressed -
11 Sobic.003G313500 MATH domain containing protein, expressed -
12 Sobic.008G132600 expressed protein -
13 Sobic.001G390800 transcription factor HBP-1b, putative, expressed K14431: transcription factor TGA
14 Sobic.008G087866 - -
15 Sobic.001G058700 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
16 Sobic.003G372500 DUF803 domain containing, putative, expressed -
17 Sobic.003G118200 phosphoadenosine phosphosulfate, putative, expressed -
18 Sobic.002G008900 sister chromatid cohesion 2, putative, expressed K06672: SCC2, cohesin loading factor subunit SCC2
19 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
20 Sobic.007G207000 Highest expression level in primordial inflorescence(PubMedID : 27501690)@OsSPL15 - SBP-box gene family member, expressed -


Gene co-expression network
sample Sobic001G050200 Sobic001G050200 Sobic002G419800 Sobic002G419800 Sobic001G050200--Sobic002G419800 Sobic003G422500 Sobic003G422500 Sobic001G050200--Sobic003G422500 Sobic009G027300 Sobic009G027300 Sobic001G050200--Sobic009G027300 Sobic003G247300 Sobic003G247300 Sobic001G050200--Sobic003G247300 Sobic009G191000 Sobic009G191000 Sobic001G050200--Sobic009G191000 Sobic007G075400 Sobic007G075400 Sobic001G050200--Sobic007G075400 Sobic004G269200 Sobic004G269200 Sobic001G050200--Sobic004G269200 Sobic004G331100 Sobic004G331100 Sobic001G050200--Sobic004G331100 Sobic003G101400 Sobic003G101400 Sobic001G050200--Sobic003G101400 Sobic002G419800--Sobic004G331100 Sobic002G419800--Sobic001G050200 Sobic002G419800--Sobic009G027300 Sobic002G419800--Sobic007G075400 Sobic001G290100 Sobic001G290100 Sobic002G419800--Sobic001G290100 Sobic007G172400 Sobic007G172400 Sobic002G419800--Sobic007G172400 Sobic001G289600 Sobic001G289600 Sobic002G419800--Sobic001G289600 Sobic007G024700 Sobic007G024700 Sobic002G419800--Sobic007G024700 Sobic007G105100 Sobic007G105100 Sobic002G419800--Sobic007G105100 Sobic002G411600 Sobic002G411600 Sobic003G422500--Sobic002G411600 Sobic003G422500--Sobic009G191000 Sobic003G422500--Sobic001G289600 Sobic009G165700 Sobic009G165700 Sobic003G422500--Sobic009G165700 Sobic002G008900 Sobic002G008900 Sobic003G422500--Sobic002G008900 Sobic004G034900 Sobic004G034900 Sobic003G422500--Sobic004G034900 Sobic001G289800 Sobic001G289800 Sobic003G422500--Sobic001G289800 Sobic001G540400 Sobic001G540400 Sobic003G422500--Sobic001G540400 Sobic008G132600 Sobic008G132600 Sobic003G422500--Sobic008G132600 Sobic009G027300--Sobic008G132600 Sobic002G045600 Sobic002G045600 Sobic009G027300--Sobic002G045600 Sobic009G027300--Sobic004G331100 Sobic009G027300--Sobic003G422500 Sobic009G027300--Sobic002G008900 Sobic009G027300--Sobic003G101400 Sobic009G027300--Sobic001G050200 Sobic009G027300--Sobic009G191000 Sobic009G027300--Sobic007G075400 Sobic003G247300--Sobic001G050200 Sobic003G313500 Sobic003G313500 Sobic003G247300--Sobic003G313500 Sobic010G139600 Sobic010G139600 Sobic003G247300--Sobic010G139600 Sobic005G001000 Sobic005G001000 Sobic003G247300--Sobic005G001000 Sobic005G028600 Sobic005G028600 Sobic003G247300--Sobic005G028600 Sobic003G247300--Sobic002G008900 Sobic003G205200 Sobic003G205200 Sobic003G247300--Sobic003G205200 Sobic003G247300--Sobic004G269200 Sobic003G247300--Sobic009G191000 Sobic009G191000--Sobic002G008900 Sobic009G191000--Sobic002G411600 Sobic009G191000--Sobic003G422500 Sobic009G053900 Sobic009G053900 Sobic009G191000--Sobic009G053900 Sobic009G191000--Sobic001G289600 Sobic009G191000--Sobic003G313500 Sobic010G247800 Sobic010G247800 Sobic009G191000--Sobic010G247800 Sobic009G191000--Sobic004G034900 Sobic001G365900 Sobic001G365900 Sobic009G191000--Sobic001G365900 Sobic007G075400--Sobic010G139600 Sobic007G075400--Sobic009G053900 Sobic007G075400--Sobic004G331100 Sobic007G075400--Sobic002G008900 Sobic007G075400--Sobic009G191000 Sobic002G146300 Sobic002G146300 Sobic007G075400--Sobic002G146300 Sobic007G075400--Sobic003G422500 Sobic007G075400--Sobic003G313500 Sobic004G065000 Sobic004G065000 Sobic007G075400--Sobic004G065000 Sobic004G269200--Sobic009G027300 Sobic004G269200--Sobic001G050200 Sobic001G281100 Sobic001G281100 Sobic004G269200--Sobic001G281100 Sobic004G329400 Sobic004G329400 Sobic004G269200--Sobic004G329400 Sobic004G269200--Sobic004G331100 Sobic004G269200--Sobic003G101400 Sobic004G004300 Sobic004G004300 Sobic004G269200--Sobic004G004300 Sobic005G157000 Sobic005G157000 Sobic004G269200--Sobic005G157000 Sobic001G534800 Sobic001G534800 Sobic004G269200--Sobic001G534800 Sobic004G331100--Sobic007G075400 Sobic004G331100--Sobic009G027300 Sobic004G331100--Sobic002G419800 Sobic004G331100--Sobic003G101400 Sobic004G331100--Sobic001G290100 Sobic004G331100--Sobic001G050200 Sobic004G347400 Sobic004G347400 Sobic004G331100--Sobic004G347400 Sobic003G118200 Sobic003G118200 Sobic004G331100--Sobic003G118200 Sobic004G331100--Sobic004G065000 Sobic003G101400--Sobic008G132600 Sobic003G101400--Sobic003G422500 Sobic003G101400--Sobic002G411600 Sobic007G062800 Sobic007G062800 Sobic003G101400--Sobic007G062800 Sobic003G101400--Sobic001G540400 Sobic003G101400--Sobic009G191000 Sobic003G101400--Sobic002G008900 Sobic003G101400--Sobic001G290100 Sobic003G229500 Sobic003G229500 Sobic003G101400--Sobic003G229500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.