Gene annotation
Transcriptome id Sobic.003G372500.1
Synonym Sb03g041310
Functional annotation DUF803 domain containing, putative, expressed
UniProt C5XRA8
Pfam PF05653
Panther DB PTHR12570 PTHR12570:SF18
NCBI CDD KOG2922; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0015693magnesium ion transport GO:0015095magnesium ion transmembrane transporter activity


Orthologs (automatic annotation)
TAIR AT4G38730 : Protein of unknown function (DUF803)
RAP-DB (Rice) LOC_Os01g65310.1 : DUF803 domain containing, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK10832
Barley HORVU3Hr1G082230.8 , HORVU3Hr1G082230.4 , HORVU3Hr1G082230.5 , HORVU3Hr1G082230.6 , HORVU3Hr1G082230.7 , HORVU3Hr1G082230.1 , HORVU3Hr1G082230.2 , HORVU3Hr1G082230.3
Wheat TraesCS3A02G383600 , TraesCS3D02G376700 , TraesCS3A02G383600 , TraesCS3B02G416000
Populus -


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cDNA sequences
Sobic.003G372500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G075400 expressed protein -
2 Sobic.010G147100 VHS and GAT domain containing protein, expressed -
3 Sobic.003G316500 expressed protein -
4 Sobic.001G050200 expressed protein -
5 Sobic.009G191000 MATH domain containing protein, expressed -
6 Sobic.010G227100 BTB/POZ domain containing protein, putative, expressed -
7 Sobic.001G534700 plus-3 domain containing protein, putative, expressed -
8 Sobic.003G313500 MATH domain containing protein, expressed -
9 Sobic.001G390800 transcription factor HBP-1b, putative, expressed K14431: transcription factor TGA
10 Sobic.001G365900 PWWP domain containing protein, expressed -
11 Sobic.007G190000 expressed protein -
12 Sobic.001G268200 zinc finger, C3HC4 type domain containing protein, expressed -
13 Sobic.009G053900 HECT-domain domain containing protein, expressed K10589: ubiquitin-protein ligase E3 C
14 Sobic.009G074400 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -
15 Sobic.010G074300 smr domain containing protein, expressed -
16 Sobic.003G198800 myosin, putative, expressed K10357: myosin V
17 Sobic.003G411900 auxin response factor 2(PubMedID : 26465154)@auxin response factor 2(PubMedID : 26465154)@"domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@"OsARF4(Ortholog in rice:Hu et al., 2018)"(PubMedID : 31659874)@Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@auxin response factor, putative, expressed -
18 Sobic.001G481900 SAC domain containing protein, putative, expressed -
19 Sobic.010G278200 expressed protein -
20 Sobic.002G008900 sister chromatid cohesion 2, putative, expressed K06672: SCC2, cohesin loading factor subunit SCC2


Gene co-expression network
sample Sobic003G372500 Sobic003G372500 Sobic007G075400 Sobic007G075400 Sobic003G372500--Sobic007G075400 Sobic010G147100 Sobic010G147100 Sobic003G372500--Sobic010G147100 Sobic003G316500 Sobic003G316500 Sobic003G372500--Sobic003G316500 Sobic001G050200 Sobic001G050200 Sobic003G372500--Sobic001G050200 Sobic009G191000 Sobic009G191000 Sobic003G372500--Sobic009G191000 Sobic010G227100 Sobic010G227100 Sobic003G372500--Sobic010G227100 Sobic001G534700 Sobic001G534700 Sobic003G372500--Sobic001G534700 Sobic003G313500 Sobic003G313500 Sobic003G372500--Sobic003G313500 Sobic001G390800 Sobic001G390800 Sobic003G372500--Sobic001G390800 Sobic010G139600 Sobic010G139600 Sobic007G075400--Sobic010G139600 Sobic009G053900 Sobic009G053900 Sobic007G075400--Sobic009G053900 Sobic004G331100 Sobic004G331100 Sobic007G075400--Sobic004G331100 Sobic002G008900 Sobic002G008900 Sobic007G075400--Sobic002G008900 Sobic007G075400--Sobic009G191000 Sobic002G146300 Sobic002G146300 Sobic007G075400--Sobic002G146300 Sobic003G422500 Sobic003G422500 Sobic007G075400--Sobic003G422500 Sobic007G075400--Sobic003G313500 Sobic004G065000 Sobic004G065000 Sobic007G075400--Sobic004G065000 Sobic010G147100--Sobic003G316500 Sobic010G278200 Sobic010G278200 Sobic010G147100--Sobic010G278200 Sobic010G074300 Sobic010G074300 Sobic010G147100--Sobic010G074300 Sobic010G147100--Sobic003G313500 Sobic010G147100--Sobic001G390800 Sobic002G311100 Sobic002G311100 Sobic010G147100--Sobic002G311100 Sobic010G147100--Sobic009G053900 Sobic001G268200 Sobic001G268200 Sobic010G147100--Sobic001G268200 Sobic003G118200 Sobic003G118200 Sobic010G147100--Sobic003G118200 Sobic003G316500--Sobic001G534700 Sobic003G316500--Sobic009G053900 Sobic009G074400 Sobic009G074400 Sobic003G316500--Sobic009G074400 Sobic001G389100 Sobic001G389100 Sobic003G316500--Sobic001G389100 Sobic003G316500--Sobic010G147100 Sobic001G365900 Sobic001G365900 Sobic003G316500--Sobic001G365900 Sobic009G165700 Sobic009G165700 Sobic003G316500--Sobic009G165700 Sobic001G451400 Sobic001G451400 Sobic003G316500--Sobic001G451400 Sobic010G206900 Sobic010G206900 Sobic003G316500--Sobic010G206900 Sobic002G419800 Sobic002G419800 Sobic001G050200--Sobic002G419800 Sobic001G050200--Sobic003G422500 Sobic009G027300 Sobic009G027300 Sobic001G050200--Sobic009G027300 Sobic003G247300 Sobic003G247300 Sobic001G050200--Sobic003G247300 Sobic001G050200--Sobic009G191000 Sobic001G050200--Sobic007G075400 Sobic004G269200 Sobic004G269200 Sobic001G050200--Sobic004G269200 Sobic001G050200--Sobic004G331100 Sobic003G101400 Sobic003G101400 Sobic001G050200--Sobic003G101400 Sobic009G191000--Sobic002G008900 Sobic002G411600 Sobic002G411600 Sobic009G191000--Sobic002G411600 Sobic009G191000--Sobic003G422500 Sobic009G191000--Sobic009G053900 Sobic001G289600 Sobic001G289600 Sobic009G191000--Sobic001G289600 Sobic009G191000--Sobic003G313500 Sobic010G247800 Sobic010G247800 Sobic009G191000--Sobic010G247800 Sobic004G034900 Sobic004G034900 Sobic009G191000--Sobic004G034900 Sobic009G191000--Sobic001G365900 Sobic002G243800 Sobic002G243800 Sobic010G227100--Sobic002G243800 Sobic002G383600 Sobic002G383600 Sobic010G227100--Sobic002G383600 Sobic010G227100--Sobic003G372500 Sobic006G275100 Sobic006G275100 Sobic010G227100--Sobic006G275100 Sobic007G190000 Sobic007G190000 Sobic010G227100--Sobic007G190000 Sobic010G227100--Sobic007G075400 Sobic010G227100--Sobic002G146300 Sobic010G227100--Sobic009G074400 Sobic010G227100--Sobic009G053900 Sobic001G534700--Sobic010G206900 Sobic001G534700--Sobic001G365900 Sobic001G534700--Sobic002G411600 Sobic001G534700--Sobic003G316500 Sobic001G534700--Sobic009G165700 Sobic001G534700--Sobic004G034900 Sobic001G534700--Sobic002G008900 Sobic001G534700--Sobic003G422500 Sobic008G001200 Sobic008G001200 Sobic001G534700--Sobic008G001200 Sobic003G313500--Sobic009G191000 Sobic003G313500--Sobic003G422500 Sobic003G313500--Sobic002G411600 Sobic001G540400 Sobic001G540400 Sobic003G313500--Sobic001G540400 Sobic003G313500--Sobic004G034900 Sobic003G313500--Sobic001G289600 Sobic003G313500--Sobic009G053900 Sobic003G313500--Sobic002G008900 Sobic003G313500--Sobic001G365900 Sobic001G390800--Sobic001G268200 Sobic001G121200 Sobic001G121200 Sobic001G390800--Sobic001G121200 Sobic001G390800--Sobic003G313500 Sobic010G205800 Sobic010G205800 Sobic001G390800--Sobic010G205800 Sobic001G085300 Sobic001G085300 Sobic001G390800--Sobic001G085300 Sobic001G390800--Sobic010G147100 Sobic001G390800--Sobic007G075400 Sobic001G390800--Sobic010G139600 Sobic001G390800--Sobic001G050200
Octagon: transcription factors


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