Gene annotation
Transcriptome id Sobic.003G316500.1
Synonym EDA16, Sb03g036380
Functional annotation expressed protein
UniProt A0A1W0VZX5
Pfam PF00097 PF00271 PF00176
Panther DB PTHR10799 PTHR10799:SF777
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT1G61140 : SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related
RAP-DB (Rice) LOC_Os01g57110.1 : SNF2 family N-terminal domain containing protein, expressed
MaizeGDB (Corn) Zm00025a039891
Brachypodium KQK10005 , KQK10066
Barley -
Wheat TraesCS3D02G313600 , TraesCS3B02G348200 , TraesCS3D02G313600 , TraesCS3D02G313600 , TraesCS3A02G317700 , TraesCS3A02G317700
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G534700 plus-3 domain containing protein, putative, expressed -
2 Sobic.009G053900 HECT-domain domain containing protein, expressed K10589: ubiquitin-protein ligase E3 C
3 Sobic.009G074400 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -
4 Sobic.001G389100 DUF630/DUF632 domains containing protein, putative, expressed -
5 Sobic.010G147100 VHS and GAT domain containing protein, expressed -
6 Sobic.001G365900 PWWP domain containing protein, expressed -
7 Sobic.009G165700 SAC3/GANP family protein, putative, expressed -
8 Sobic.001G451400 HEAT repeat family protein, putative, expressed K15305: VAC14, vacuole morphology and inheritance protein 14
9 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
10 Sobic.003G372500 DUF803 domain containing, putative, expressed -
11 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
12 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
13 Sobic.009G191000 MATH domain containing protein, expressed -
14 Sobic.003G221900 helix-loop-helix DNA-binding domain containing protein, expressed -
15 Sobic.003G422500 expressed protein -
16 Sobic.003G313500 MATH domain containing protein, expressed -
17 Sobic.005G100700 mRNA-capping enzyme, putative, expressed -
18 Sobic.002G045600 transcriptional corepressor SEUSS, putative, expressed -
19 Sobic.001G261501 - -
20 Sobic.003G118200 phosphoadenosine phosphosulfate, putative, expressed -


Gene co-expression network
sample Sobic003G316500 Sobic003G316500 Sobic001G534700 Sobic001G534700 Sobic003G316500--Sobic001G534700 Sobic009G053900 Sobic009G053900 Sobic003G316500--Sobic009G053900 Sobic009G074400 Sobic009G074400 Sobic003G316500--Sobic009G074400 Sobic001G389100 Sobic001G389100 Sobic003G316500--Sobic001G389100 Sobic010G147100 Sobic010G147100 Sobic003G316500--Sobic010G147100 Sobic001G365900 Sobic001G365900 Sobic003G316500--Sobic001G365900 Sobic009G165700 Sobic009G165700 Sobic003G316500--Sobic009G165700 Sobic001G451400 Sobic001G451400 Sobic003G316500--Sobic001G451400 Sobic010G206900 Sobic010G206900 Sobic003G316500--Sobic010G206900 Sobic001G534700--Sobic010G206900 Sobic001G534700--Sobic001G365900 Sobic002G411600 Sobic002G411600 Sobic001G534700--Sobic002G411600 Sobic001G534700--Sobic003G316500 Sobic001G534700--Sobic009G165700 Sobic004G034900 Sobic004G034900 Sobic001G534700--Sobic004G034900 Sobic002G008900 Sobic002G008900 Sobic001G534700--Sobic002G008900 Sobic003G422500 Sobic003G422500 Sobic001G534700--Sobic003G422500 Sobic008G001200 Sobic008G001200 Sobic001G534700--Sobic008G001200 Sobic009G191000 Sobic009G191000 Sobic009G053900--Sobic009G191000 Sobic003G118200 Sobic003G118200 Sobic009G053900--Sobic003G118200 Sobic009G053900--Sobic002G008900 Sobic009G053900--Sobic003G422500 Sobic009G053900--Sobic001G365900 Sobic001G289600 Sobic001G289600 Sobic009G053900--Sobic001G289600 Sobic009G053900--Sobic010G206900 Sobic007G075400 Sobic007G075400 Sobic009G053900--Sobic007G075400 Sobic001G540400 Sobic001G540400 Sobic009G053900--Sobic001G540400 Sobic009G074400--Sobic003G316500 Sobic009G074400--Sobic001G534700 Sobic003G155100 Sobic003G155100 Sobic009G074400--Sobic003G155100 Sobic003G198800 Sobic003G198800 Sobic009G074400--Sobic003G198800 Sobic002G311100 Sobic002G311100 Sobic009G074400--Sobic002G311100 Sobic006G051800 Sobic006G051800 Sobic009G074400--Sobic006G051800 Sobic006G219600 Sobic006G219600 Sobic009G074400--Sobic006G219600 Sobic009G074400--Sobic008G001200 Sobic004G001500 Sobic004G001500 Sobic009G074400--Sobic004G001500 Sobic001G389100--Sobic001G451400 Sobic001G389100--Sobic003G316500 Sobic001G389100--Sobic009G165700 Sobic001G389100--Sobic001G534700 Sobic001G389100--Sobic010G206900 Sobic010G247800 Sobic010G247800 Sobic001G389100--Sobic010G247800 Sobic001G389100--Sobic009G053900 Sobic001G389100--Sobic001G365900 Sobic002G252800 Sobic002G252800 Sobic001G389100--Sobic002G252800 Sobic010G147100--Sobic003G316500 Sobic010G278200 Sobic010G278200 Sobic010G147100--Sobic010G278200 Sobic010G074300 Sobic010G074300 Sobic010G147100--Sobic010G074300 Sobic003G313500 Sobic003G313500 Sobic010G147100--Sobic003G313500 Sobic001G390800 Sobic001G390800 Sobic010G147100--Sobic001G390800 Sobic010G147100--Sobic002G311100 Sobic010G147100--Sobic009G053900 Sobic001G268200 Sobic001G268200 Sobic010G147100--Sobic001G268200 Sobic010G147100--Sobic003G118200 Sobic001G365900--Sobic010G206900 Sobic001G365900--Sobic001G534700 Sobic001G365900--Sobic001G289600 Sobic008G130100 Sobic008G130100 Sobic001G365900--Sobic008G130100 Sobic001G365900--Sobic002G411600 Sobic001G365900--Sobic002G008900 Sobic001G365900--Sobic009G191000 Sobic001G365900--Sobic004G034900 Sobic001G365900--Sobic001G540400 Sobic009G165700--Sobic003G422500 Sobic009G165700--Sobic010G247800 Sobic009G165700--Sobic010G206900 Sobic003G166750 Sobic003G166750 Sobic009G165700--Sobic003G166750 Sobic008G087866 Sobic008G087866 Sobic009G165700--Sobic008G087866 Sobic009G165700--Sobic001G451400 Sobic003G170900 Sobic003G170900 Sobic009G165700--Sobic003G170900 Sobic009G165700--Sobic001G534700 Sobic009G165700--Sobic008G001200 Sobic007G008900 Sobic007G008900 Sobic001G451400--Sobic007G008900 Sobic001G451400--Sobic009G165700 Sobic001G441400 Sobic001G441400 Sobic001G451400--Sobic001G441400 Sobic001G451400--Sobic001G389100 Sobic001G451400--Sobic010G247800 Sobic003G404500 Sobic003G404500 Sobic001G451400--Sobic003G404500 Sobic010G226000 Sobic010G226000 Sobic001G451400--Sobic010G226000 Sobic005G027400 Sobic005G027400 Sobic001G451400--Sobic005G027400 Sobic001G451400--Sobic003G422500 Sobic010G010700 Sobic010G010700 Sobic010G206900--Sobic010G010700 Sobic010G206900--Sobic001G365900 Sobic010G206900--Sobic004G034900 Sobic010G206900--Sobic001G534700 Sobic010G206900--Sobic010G247800 Sobic010G206900--Sobic002G411600 Sobic010G206900--Sobic008G001200 Sobic003G196300 Sobic003G196300 Sobic010G206900--Sobic003G196300 Sobic010G206900--Sobic009G165700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.