Gene annotation
Transcriptome id Sobic.001G451400.1
Synonym Sb01g042440
Functional annotation HEAT repeat family protein, putative, expressed
UniProt C5WSM8
Pfam PF02985 PF11916
Panther DB PTHR16023 PTHR16023:SF0
NCBI CDD -
KEGG Orthology K15305; VAC14, vacuole morphology and inheritance protein 14
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G01690 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os03g12300.1 : HEAT repeat family protein, putative, expressed
MaizeGDB (Corn) Zm00025a023640 , Zm00025a022577 , Zm00025a001370 , Zm00025a038603 , Zm00025a024666 , Zm00025a001971 , Zm00025a053029 , Zm00025a030015 , Zm00025a054013
Brachypodium PNT77852 , KQK22826
Barley HORVU4Hr1G066830.9 , HORVU4Hr1G066830.8 , HORVU4Hr1G066830.7 , HORVU4Hr1G066830.6 , HORVU4Hr1G066830.5 , HORVU4Hr1G066830.4 , HORVU4Hr1G066830.3 , HORVU4Hr1G066830.2 , HORVU4Hr1G066830.1 , HORVU4Hr1G066830.12 , HORVU4Hr1G066830.11 , HORVU4Hr1G066830.10
Wheat TraesCS4B02G240800 , TraesCS4B02G240800 , TraesCS4B02G240800 , TraesCS4B02G240800 , TraesCS4B02G240800 , TraesCS4B02G240800 , TraesCS4B02G240800 , TraesCS4B02G240800 , TraesCS4D02G240600 , TraesCS4D02G240600 , TraesCS4D02G240600 , TraesCS4D02G240600 , TraesCS4D02G240600 , TraesCS4D02G240600 , TraesCS4D02G240600 , TraesCS4A02G063700 , TraesCS4A02G063700 , TraesCS4A02G063700 , TraesCS4A02G063700 , TraesCS4A02G063700
Populus PNT15801 , PNT15802 , PNT24444 , PNT24445 , PNT24441 , PNT24442 , PNT24443


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cDNA sequences
Sobic.001G451400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G008900 SAC domain containing protein, putative, expressed -
2 Sobic.009G165700 SAC3/GANP family protein, putative, expressed -
3 Sobic.001G441400 transcription factor, putative, expressed K09060: plant G-box-binding factor
4 Sobic.001G389100 DUF630/DUF632 domains containing protein, putative, expressed -
5 Sobic.010G247800 zinc finger, C3HC4 type domain containing protein, expressed K10696: E3 ubiquitin-protein ligase BRE1
6 Sobic.003G404500 dynamin family protein, putative, expressed K17065: dynamin 1-like protein
7 Sobic.010G226000 expressed protein -
8 Sobic.005G027400 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
9 Sobic.003G422500 expressed protein -
10 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
11 Sobic.004G072100 centromere/kinetochore protein zw10, putative, expressed K11578: ZW10, protein transport protein DSL1/ZW10
12 Sobic.003G102400 expressed protein -
13 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
14 Sobic.009G191000 MATH domain containing protein, expressed -
15 Sobic.003G118200 phosphoadenosine phosphosulfate, putative, expressed -
16 Sobic.001G363500 DIRP family protein, putative, expressed -
17 Sobic.003G059750 - K11797: PHIP, PH-interacting protein
18 Sobic.007G218000 chloride transporter, chloride channel family, putative, expressed -
19 Sobic.006G252900 ubiquitin family protein, putative, expressed -
20 Sobic.009G053900 HECT-domain domain containing protein, expressed K10589: ubiquitin-protein ligase E3 C


Gene co-expression network
sample Sobic001G451400 Sobic001G451400 Sobic007G008900 Sobic007G008900 Sobic001G451400--Sobic007G008900 Sobic009G165700 Sobic009G165700 Sobic001G451400--Sobic009G165700 Sobic001G441400 Sobic001G441400 Sobic001G451400--Sobic001G441400 Sobic001G389100 Sobic001G389100 Sobic001G451400--Sobic001G389100 Sobic010G247800 Sobic010G247800 Sobic001G451400--Sobic010G247800 Sobic003G404500 Sobic003G404500 Sobic001G451400--Sobic003G404500 Sobic010G226000 Sobic010G226000 Sobic001G451400--Sobic010G226000 Sobic005G027400 Sobic005G027400 Sobic001G451400--Sobic005G027400 Sobic003G422500 Sobic003G422500 Sobic001G451400--Sobic003G422500 Sobic007G008900--Sobic001G451400 Sobic002G112700 Sobic002G112700 Sobic007G008900--Sobic002G112700 Sobic001G114000 Sobic001G114000 Sobic007G008900--Sobic001G114000 Sobic007G011300 Sobic007G011300 Sobic007G008900--Sobic007G011300 Sobic003G059750 Sobic003G059750 Sobic007G008900--Sobic003G059750 Sobic004G067700 Sobic004G067700 Sobic007G008900--Sobic004G067700 Sobic002G408200 Sobic002G408200 Sobic007G008900--Sobic002G408200 Sobic007G217000 Sobic007G217000 Sobic007G008900--Sobic007G217000 Sobic001G155000 Sobic001G155000 Sobic007G008900--Sobic001G155000 Sobic009G165700--Sobic003G422500 Sobic009G165700--Sobic010G247800 Sobic010G206900 Sobic010G206900 Sobic009G165700--Sobic010G206900 Sobic003G166750 Sobic003G166750 Sobic009G165700--Sobic003G166750 Sobic008G087866 Sobic008G087866 Sobic009G165700--Sobic008G087866 Sobic009G165700--Sobic001G451400 Sobic003G170900 Sobic003G170900 Sobic009G165700--Sobic003G170900 Sobic001G534700 Sobic001G534700 Sobic009G165700--Sobic001G534700 Sobic008G001200 Sobic008G001200 Sobic009G165700--Sobic008G001200 Sobic001G441400--Sobic001G451400 Sobic001G441400--Sobic003G404500 Sobic006G252900 Sobic006G252900 Sobic001G441400--Sobic006G252900 Sobic001G441400--Sobic005G027400 Sobic001G441400--Sobic009G165700 Sobic001G363500 Sobic001G363500 Sobic001G441400--Sobic001G363500 Sobic003G102400 Sobic003G102400 Sobic001G441400--Sobic003G102400 Sobic002G299700 Sobic002G299700 Sobic001G441400--Sobic002G299700 Sobic004G351100 Sobic004G351100 Sobic001G441400--Sobic004G351100 Sobic001G389100--Sobic001G451400 Sobic003G316500 Sobic003G316500 Sobic001G389100--Sobic003G316500 Sobic001G389100--Sobic009G165700 Sobic001G389100--Sobic001G534700 Sobic001G389100--Sobic010G206900 Sobic001G389100--Sobic010G247800 Sobic009G053900 Sobic009G053900 Sobic001G389100--Sobic009G053900 Sobic001G365900 Sobic001G365900 Sobic001G389100--Sobic001G365900 Sobic002G252800 Sobic002G252800 Sobic001G389100--Sobic002G252800 Sobic010G247800--Sobic010G206900 Sobic010G247800--Sobic009G165700 Sobic002G411600 Sobic002G411600 Sobic010G247800--Sobic002G411600 Sobic010G247800--Sobic003G422500 Sobic009G191000 Sobic009G191000 Sobic010G247800--Sobic009G191000 Sobic001G002000 Sobic001G002000 Sobic010G247800--Sobic001G002000 Sobic010G247800--Sobic001G363500 Sobic004G291900 Sobic004G291900 Sobic010G247800--Sobic004G291900 Sobic002G405800 Sobic002G405800 Sobic010G247800--Sobic002G405800 Sobic003G404500--Sobic001G451400 Sobic003G404500--Sobic001G441400 Sobic009G245800 Sobic009G245800 Sobic003G404500--Sobic009G245800 Sobic003G404500--Sobic001G363500 Sobic010G116600 Sobic010G116600 Sobic003G404500--Sobic010G116600 Sobic007G218000 Sobic007G218000 Sobic003G404500--Sobic007G218000 Sobic004G072100 Sobic004G072100 Sobic003G404500--Sobic004G072100 Sobic009G044800 Sobic009G044800 Sobic003G404500--Sobic009G044800 Sobic010G053800 Sobic010G053800 Sobic003G404500--Sobic010G053800 Sobic010G226000--Sobic001G451400 Sobic009G256400 Sobic009G256400 Sobic010G226000--Sobic009G256400 Sobic004G209700 Sobic004G209700 Sobic010G226000--Sobic004G209700 Sobic010G226000--Sobic009G165700 Sobic010G226000--Sobic003G166750 Sobic010G226000--Sobic001G441400 Sobic001G457800 Sobic001G457800 Sobic010G226000--Sobic001G457800 Sobic001G111850 Sobic001G111850 Sobic010G226000--Sobic001G111850 Sobic003G444800 Sobic003G444800 Sobic010G226000--Sobic003G444800 Sobic002G309600 Sobic002G309600 Sobic005G027400--Sobic002G309600 Sobic004G065100 Sobic004G065100 Sobic005G027400--Sobic004G065100 Sobic005G027400--Sobic001G451400 Sobic009G132700 Sobic009G132700 Sobic005G027400--Sobic009G132700 Sobic007G117400 Sobic007G117400 Sobic005G027400--Sobic007G117400 Sobic001G219600 Sobic001G219600 Sobic005G027400--Sobic001G219600 Sobic001G289800 Sobic001G289800 Sobic005G027400--Sobic001G289800 Sobic008G047800 Sobic008G047800 Sobic005G027400--Sobic008G047800 Sobic004G006900 Sobic004G006900 Sobic005G027400--Sobic004G006900 Sobic003G422500--Sobic002G411600 Sobic003G422500--Sobic009G191000 Sobic001G289600 Sobic001G289600 Sobic003G422500--Sobic001G289600 Sobic003G422500--Sobic009G165700 Sobic002G008900 Sobic002G008900 Sobic003G422500--Sobic002G008900 Sobic004G034900 Sobic004G034900 Sobic003G422500--Sobic004G034900 Sobic003G422500--Sobic001G289800 Sobic001G540400 Sobic001G540400 Sobic003G422500--Sobic001G540400 Sobic008G132600 Sobic008G132600 Sobic003G422500--Sobic008G132600
Octagon: transcription factors


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