Gene annotation
Transcriptome id Sobic.009G053900.1
Synonym Sb09g004530, UPL6
Functional annotation HECT-domain domain containing protein, expressed
UniProt C5Z0M5
Pfam PF00632
Panther DB PTHR11254 PTHR11254:SF281
NCBI CDD -
KEGG Orthology K10589; ubiquitin-protein ligase E3 C
Gene Ontology GO:0004842; ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT3G17205 : ubiquitin protein ligase 6
RAP-DB (Rice) LOC_Os05g06690.2 : HECT-domain domain containing protein, expressed
MaizeGDB (Corn) Zm00025a054484 , Zm00025a013364 , Zm00025a048972 , Zm00025a009170 , Zm00025a042954 , Zm00025a054686
Brachypodium PNT71738 , KQK07363
Barley HORVU1Hr1G023480.8 , HORVU1Hr1G023480.9 , HORVU1Hr1G023480.4 , HORVU1Hr1G023480.5 , HORVU1Hr1G023480.6 , HORVU1Hr1G023480.7 , HORVU1Hr1G023480.1 , HORVU1Hr1G023480.2 , HORVU1Hr1G023480.3
Wheat TraesCS1A02G106100 , TraesCS1A02G106100 , TraesCS1A02G106100 , TraesCS1A02G106100 , TraesCS1D02G108900 , TraesCS1D02G108900 , TraesCS1B02G123400 , TraesCS1B02G123400 , TraesCS1B02G123400 , TraesCS1B02G123400
Populus -


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cDNA sequences
Sobic.009G053900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G191000 MATH domain containing protein, expressed -
2 Sobic.003G118200 phosphoadenosine phosphosulfate, putative, expressed -
3 Sobic.002G008900 sister chromatid cohesion 2, putative, expressed K06672: SCC2, cohesin loading factor subunit SCC2
4 Sobic.003G422500 expressed protein -
5 Sobic.001G365900 PWWP domain containing protein, expressed -
6 Sobic.001G289600 BAH domain containing protein, putative, expressed -
7 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
8 Sobic.007G075400 expressed protein -
9 Sobic.001G540400 expressed protein -
10 Sobic.003G313500 MATH domain containing protein, expressed -
11 Sobic.001G534700 plus-3 domain containing protein, putative, expressed -
12 Sobic.010G010700 PHD-finger family protein, expressed -
13 Sobic.004G034900 histone acetyltransferase HAC1, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
14 Sobic.007G062800 SET domain containing protein, expressed -
15 Sobic.007G133700 expressed protein -
16 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
17 Sobic.002G411600 CW-type Zinc Finger, putative, expressed -
18 Sobic.003G316500 expressed protein -
19 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
20 Sobic.002G146300 cig3, putative, expressed K14409: SMG7, protein SMG7


Gene co-expression network
sample Sobic009G053900 Sobic009G053900 Sobic009G191000 Sobic009G191000 Sobic009G053900--Sobic009G191000 Sobic003G118200 Sobic003G118200 Sobic009G053900--Sobic003G118200 Sobic002G008900 Sobic002G008900 Sobic009G053900--Sobic002G008900 Sobic003G422500 Sobic003G422500 Sobic009G053900--Sobic003G422500 Sobic001G365900 Sobic001G365900 Sobic009G053900--Sobic001G365900 Sobic001G289600 Sobic001G289600 Sobic009G053900--Sobic001G289600 Sobic010G206900 Sobic010G206900 Sobic009G053900--Sobic010G206900 Sobic007G075400 Sobic007G075400 Sobic009G053900--Sobic007G075400 Sobic001G540400 Sobic001G540400 Sobic009G053900--Sobic001G540400 Sobic009G191000--Sobic002G008900 Sobic002G411600 Sobic002G411600 Sobic009G191000--Sobic002G411600 Sobic009G191000--Sobic003G422500 Sobic009G191000--Sobic009G053900 Sobic009G191000--Sobic001G289600 Sobic003G313500 Sobic003G313500 Sobic009G191000--Sobic003G313500 Sobic010G247800 Sobic010G247800 Sobic009G191000--Sobic010G247800 Sobic004G034900 Sobic004G034900 Sobic009G191000--Sobic004G034900 Sobic009G191000--Sobic001G365900 Sobic003G118200--Sobic009G053900 Sobic003G118200--Sobic009G191000 Sobic009G113000 Sobic009G113000 Sobic003G118200--Sobic009G113000 Sobic003G118200--Sobic003G422500 Sobic003G118200--Sobic002G008900 Sobic004G347400 Sobic004G347400 Sobic003G118200--Sobic004G347400 Sobic003G118200--Sobic007G075400 Sobic001G451400 Sobic001G451400 Sobic003G118200--Sobic001G451400 Sobic003G118200--Sobic003G313500 Sobic002G008900--Sobic009G191000 Sobic002G008900--Sobic002G411600 Sobic007G062800 Sobic007G062800 Sobic002G008900--Sobic007G062800 Sobic002G008900--Sobic003G422500 Sobic005G001000 Sobic005G001000 Sobic002G008900--Sobic005G001000 Sobic010G010700 Sobic010G010700 Sobic002G008900--Sobic010G010700 Sobic002G008900--Sobic004G034900 Sobic002G008900--Sobic010G206900 Sobic002G008900--Sobic009G053900 Sobic003G422500--Sobic002G411600 Sobic003G422500--Sobic009G191000 Sobic003G422500--Sobic001G289600 Sobic009G165700 Sobic009G165700 Sobic003G422500--Sobic009G165700 Sobic003G422500--Sobic002G008900 Sobic003G422500--Sobic004G034900 Sobic001G289800 Sobic001G289800 Sobic003G422500--Sobic001G289800 Sobic003G422500--Sobic001G540400 Sobic008G132600 Sobic008G132600 Sobic003G422500--Sobic008G132600 Sobic001G365900--Sobic010G206900 Sobic001G534700 Sobic001G534700 Sobic001G365900--Sobic001G534700 Sobic001G365900--Sobic001G289600 Sobic008G130100 Sobic008G130100 Sobic001G365900--Sobic008G130100 Sobic001G365900--Sobic002G411600 Sobic001G365900--Sobic002G008900 Sobic001G365900--Sobic009G191000 Sobic001G365900--Sobic004G034900 Sobic001G365900--Sobic001G540400 Sobic001G289600--Sobic001G540400 Sobic001G289600--Sobic004G034900 Sobic001G289600--Sobic001G289800 Sobic001G289600--Sobic003G422500 Sobic001G289600--Sobic001G365900 Sobic001G289600--Sobic009G191000 Sobic005G008800 Sobic005G008800 Sobic001G289600--Sobic005G008800 Sobic007G105100 Sobic007G105100 Sobic001G289600--Sobic007G105100 Sobic001G289600--Sobic010G010700 Sobic010G206900--Sobic010G010700 Sobic010G206900--Sobic001G365900 Sobic010G206900--Sobic004G034900 Sobic010G206900--Sobic001G534700 Sobic010G206900--Sobic010G247800 Sobic010G206900--Sobic002G411600 Sobic008G001200 Sobic008G001200 Sobic010G206900--Sobic008G001200 Sobic003G196300 Sobic003G196300 Sobic010G206900--Sobic003G196300 Sobic010G206900--Sobic009G165700 Sobic010G139600 Sobic010G139600 Sobic007G075400--Sobic010G139600 Sobic007G075400--Sobic009G053900 Sobic004G331100 Sobic004G331100 Sobic007G075400--Sobic004G331100 Sobic007G075400--Sobic002G008900 Sobic007G075400--Sobic009G191000 Sobic002G146300 Sobic002G146300 Sobic007G075400--Sobic002G146300 Sobic007G075400--Sobic003G422500 Sobic007G075400--Sobic003G313500 Sobic004G065000 Sobic004G065000 Sobic007G075400--Sobic004G065000 Sobic001G540400--Sobic001G289600 Sobic003G408600 Sobic003G408600 Sobic001G540400--Sobic003G408600 Sobic001G540400--Sobic007G062800 Sobic001G540400--Sobic005G008800 Sobic001G540400--Sobic004G034900 Sobic005G112300 Sobic005G112300 Sobic001G540400--Sobic005G112300 Sobic001G540400--Sobic003G422500 Sobic002G397500 Sobic002G397500 Sobic001G540400--Sobic002G397500 Sobic010G112100 Sobic010G112100 Sobic001G540400--Sobic010G112100
Octagon: transcription factors


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