Gene annotation
Transcriptome id Sobic.002G411600.1
Synonym Sb02g042440
Functional annotation CW-type Zinc Finger, putative, expressed
UniProt A0A1W0W7U9
Pfam PF07496
Panther DB PTHR23336 PTHR23336:SF14
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT3G62900 : CW-type Zinc Finger
RAP-DB (Rice) LOC_Os07g47360.2 : CW-type Zinc Finger, putative, expressed
MaizeGDB (Corn) Zm00025a002429
Brachypodium KQK21709 , KQK21708 , KQK21714 , KQK21710 , KQK21711 , PNT77420 , PNT77421 , KQK21712 , KQK21713 , KQK14792
Barley -
Wheat TraesCS2D02G118500 , TraesCS2D02G118500 , TraesCS2A02G116600 , TraesCS2B02G135800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G191000 MATH domain containing protein, expressed -
2 Sobic.003G422500 expressed protein -
3 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
4 Sobic.002G008900 sister chromatid cohesion 2, putative, expressed K06672: SCC2, cohesin loading factor subunit SCC2
5 Sobic.004G034900 histone acetyltransferase HAC1, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
6 Sobic.004G174200 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12813: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
7 Sobic.010G247800 zinc finger, C3HC4 type domain containing protein, expressed K10696: E3 ubiquitin-protein ligase BRE1
8 Sobic.001G534700 plus-3 domain containing protein, putative, expressed -
9 Sobic.003G101400 transcriptional repressor, putative, expressed K11644: paired amphipathic helix protein Sin3a
10 Sobic.003G313500 MATH domain containing protein, expressed -
11 Sobic.001G365900 PWWP domain containing protein, expressed -
12 Sobic.008G132600 expressed protein -
13 Sobic.001G289600 BAH domain containing protein, putative, expressed -
14 Sobic.010G010700 PHD-finger family protein, expressed -
15 Sobic.001G540400 expressed protein -
16 Sobic.004G291900 ESP4, putative, expressed K06100: symplekin
17 Sobic.007G062800 SET domain containing protein, expressed -
18 Sobic.001G002000 protein kinase domain containing protein, expressed -
19 Sobic.009G165700 SAC3/GANP family protein, putative, expressed -
20 Sobic.001G289800 BAH domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic002G411600 Sobic002G411600 Sobic009G191000 Sobic009G191000 Sobic002G411600--Sobic009G191000 Sobic003G422500 Sobic003G422500 Sobic002G411600--Sobic003G422500 Sobic010G206900 Sobic010G206900 Sobic002G411600--Sobic010G206900 Sobic002G008900 Sobic002G008900 Sobic002G411600--Sobic002G008900 Sobic004G034900 Sobic004G034900 Sobic002G411600--Sobic004G034900 Sobic004G174200 Sobic004G174200 Sobic002G411600--Sobic004G174200 Sobic010G247800 Sobic010G247800 Sobic002G411600--Sobic010G247800 Sobic001G534700 Sobic001G534700 Sobic002G411600--Sobic001G534700 Sobic003G101400 Sobic003G101400 Sobic002G411600--Sobic003G101400 Sobic009G191000--Sobic002G008900 Sobic009G191000--Sobic002G411600 Sobic009G191000--Sobic003G422500 Sobic009G053900 Sobic009G053900 Sobic009G191000--Sobic009G053900 Sobic001G289600 Sobic001G289600 Sobic009G191000--Sobic001G289600 Sobic003G313500 Sobic003G313500 Sobic009G191000--Sobic003G313500 Sobic009G191000--Sobic010G247800 Sobic009G191000--Sobic004G034900 Sobic001G365900 Sobic001G365900 Sobic009G191000--Sobic001G365900 Sobic003G422500--Sobic002G411600 Sobic003G422500--Sobic009G191000 Sobic003G422500--Sobic001G289600 Sobic009G165700 Sobic009G165700 Sobic003G422500--Sobic009G165700 Sobic003G422500--Sobic002G008900 Sobic003G422500--Sobic004G034900 Sobic001G289800 Sobic001G289800 Sobic003G422500--Sobic001G289800 Sobic001G540400 Sobic001G540400 Sobic003G422500--Sobic001G540400 Sobic008G132600 Sobic008G132600 Sobic003G422500--Sobic008G132600 Sobic010G010700 Sobic010G010700 Sobic010G206900--Sobic010G010700 Sobic010G206900--Sobic001G365900 Sobic010G206900--Sobic004G034900 Sobic010G206900--Sobic001G534700 Sobic010G206900--Sobic010G247800 Sobic010G206900--Sobic002G411600 Sobic008G001200 Sobic008G001200 Sobic010G206900--Sobic008G001200 Sobic003G196300 Sobic003G196300 Sobic010G206900--Sobic003G196300 Sobic010G206900--Sobic009G165700 Sobic002G008900--Sobic009G191000 Sobic002G008900--Sobic002G411600 Sobic007G062800 Sobic007G062800 Sobic002G008900--Sobic007G062800 Sobic002G008900--Sobic003G422500 Sobic005G001000 Sobic005G001000 Sobic002G008900--Sobic005G001000 Sobic002G008900--Sobic010G010700 Sobic002G008900--Sobic004G034900 Sobic002G008900--Sobic010G206900 Sobic002G008900--Sobic009G053900 Sobic004G034900--Sobic001G289600 Sobic004G034900--Sobic010G206900 Sobic004G034900--Sobic010G010700 Sobic004G034900--Sobic002G411600 Sobic004G034900--Sobic001G540400 Sobic004G034900--Sobic003G422500 Sobic004G276400 Sobic004G276400 Sobic004G034900--Sobic004G276400 Sobic004G034900--Sobic002G008900 Sobic004G034900--Sobic007G062800 Sobic004G291900 Sobic004G291900 Sobic004G174200--Sobic004G291900 Sobic004G174200--Sobic002G411600 Sobic004G174200--Sobic008G001200 Sobic004G174200--Sobic010G206900 Sobic004G174200--Sobic002G008900 Sobic004G174200--Sobic001G289800 Sobic004G174200--Sobic005G001000 Sobic004G174200--Sobic003G422500 Sobic001G194200 Sobic001G194200 Sobic004G174200--Sobic001G194200 Sobic010G247800--Sobic010G206900 Sobic010G247800--Sobic009G165700 Sobic010G247800--Sobic002G411600 Sobic010G247800--Sobic003G422500 Sobic010G247800--Sobic009G191000 Sobic001G002000 Sobic001G002000 Sobic010G247800--Sobic001G002000 Sobic001G363500 Sobic001G363500 Sobic010G247800--Sobic001G363500 Sobic010G247800--Sobic004G291900 Sobic002G405800 Sobic002G405800 Sobic010G247800--Sobic002G405800 Sobic001G534700--Sobic010G206900 Sobic001G534700--Sobic001G365900 Sobic001G534700--Sobic002G411600 Sobic003G316500 Sobic003G316500 Sobic001G534700--Sobic003G316500 Sobic001G534700--Sobic009G165700 Sobic001G534700--Sobic004G034900 Sobic001G534700--Sobic002G008900 Sobic001G534700--Sobic003G422500 Sobic001G534700--Sobic008G001200 Sobic003G101400--Sobic008G132600 Sobic003G101400--Sobic003G422500 Sobic003G101400--Sobic002G411600 Sobic003G101400--Sobic007G062800 Sobic003G101400--Sobic001G540400 Sobic003G101400--Sobic009G191000 Sobic003G101400--Sobic002G008900 Sobic001G290100 Sobic001G290100 Sobic003G101400--Sobic001G290100 Sobic003G229500 Sobic003G229500 Sobic003G101400--Sobic003G229500
Octagon: transcription factors


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