Gene annotation
Transcriptome id Sobic.003G101400.1,Sobic.003G101400.2
Synonym SNL3, SIN3, Sb03g008490, ATSIN3
Functional annotation transcriptional repressor, putative, expressed
UniProt P93525 , C5XEY3
Pfam PF08295 PF02671 PF16879
Panther DB PTHR12346 PTHR12346:SF8
NCBI CDD KOG4204; Histone deacetylase complex, SIN3 component
KEGG Orthology K11644; paired amphipathic helix protein Sin3a
Gene Ontology GO:0006355; regulation of transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT1G70060 : SIN3-like 4
RAP-DB (Rice) LOC_Os01g01960.1 : transcriptional repressor, putative, expressed
MaizeGDB (Corn) Zm00025a041030 , Zm00025a035427 , Zm00025a023758
Brachypodium KQK02336 , KQK08163 , KQK08164
Barley HORVU1Hr1G000290.1 , HORVU3Hr1G000540.16 , HORVU3Hr1G000540.17 , HORVU3Hr1G000540.14 , HORVU3Hr1G000540.15 , HORVU3Hr1G000540.12 , HORVU3Hr1G000540.13 , HORVU3Hr1G000540.10 , HORVU3Hr1G000540.11 , HORVU3Hr1G000540.18 , HORVU3Hr1G000540.19 , HORVU1Hr1G000290.8 , HORVU3Hr1G000540.4 , HORVU3Hr1G000540.5 , HORVU3Hr1G000540.6 , HORVU3Hr1G000540.7 , HORVU3Hr1G000540.1 , HORVU3Hr1G000540.2 , HORVU3Hr1G000540.3 , HORVU3Hr1G000540.8 , HORVU3Hr1G000540.9 , HORVU1Hr1G000290.6 , HORVU1Hr1G000290.7 , HORVU1Hr1G000290.4 , HORVU1Hr1G000290.5 , HORVU1Hr1G000290.2 , HORVU1Hr1G000290.3 , HORVU1Hr1G000290.9 , HORVU1Hr1G000290.18 , HORVU1Hr1G000290.14 , HORVU1Hr1G000290.15 , HORVU1Hr1G000290.16 , HORVU1Hr1G000290.17 , HORVU1Hr1G000290.10 , HORVU1Hr1G000290.11 , HORVU1Hr1G000290.12 , HORVU1Hr1G000290.13 , HORVU3Hr1G000540.23 , HORVU3Hr1G000540.22 , HORVU3Hr1G000540.21 , HORVU3Hr1G000540.20
Wheat TraesCS1B02G002000 , TraesCS1B02G002000 , TraesCS3B02G005900 , TraesCS1D02G004900 , TraesCS3B02G005900 , TraesCS3D02G007600 , TraesCS3D02G007600 , TraesCS3B02G005900 , TraesCSU02G039900 , TraesCSU02G039900 , TraesCS1A02G002700 , TraesCS1D02G004900 , TraesCS1D02G004900 , TraesCS1D02G004900 , TraesCS1D02G004900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G132600 expressed protein -
2 Sobic.003G422500 expressed protein -
3 Sobic.002G411600 CW-type Zinc Finger, putative, expressed -
4 Sobic.007G062800 SET domain containing protein, expressed -
5 Sobic.001G540400 expressed protein -
6 Sobic.009G191000 MATH domain containing protein, expressed -
7 Sobic.002G008900 sister chromatid cohesion 2, putative, expressed K06672: SCC2, cohesin loading factor subunit SCC2
8 Sobic.001G290100 expressed protein -
9 Sobic.003G229500 ZOS12-01 - C2H2 zinc finger protein, expressed -
10 Sobic.001G289600 BAH domain containing protein, putative, expressed -
11 Sobic.001G534700 plus-3 domain containing protein, putative, expressed -
12 Sobic.004G331100 WD domain and HEAT domain containing protein, putative, expressed K08333: PIK3R4, phosphoinositide-3-kinase, regulatory subunit 4
13 Sobic.009G027300 MYB family transcription factor, putative, expressed K04650: NCOR1, nuclear receptor co-repressor 1
14 Sobic.007G075400 expressed protein -
15 Sobic.002G405800 PHD-finger family protein, expressed -
16 Sobic.009G026500 ATSIZ1/SIZ1, putative, expressed -
17 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
18 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
19 Sobic.007G133700 expressed protein -
20 Sobic.009G165700 SAC3/GANP family protein, putative, expressed -


Gene co-expression network
sample Sobic003G101400 Sobic003G101400 Sobic008G132600 Sobic008G132600 Sobic003G101400--Sobic008G132600 Sobic003G422500 Sobic003G422500 Sobic003G101400--Sobic003G422500 Sobic002G411600 Sobic002G411600 Sobic003G101400--Sobic002G411600 Sobic007G062800 Sobic007G062800 Sobic003G101400--Sobic007G062800 Sobic001G540400 Sobic001G540400 Sobic003G101400--Sobic001G540400 Sobic009G191000 Sobic009G191000 Sobic003G101400--Sobic009G191000 Sobic002G008900 Sobic002G008900 Sobic003G101400--Sobic002G008900 Sobic001G290100 Sobic001G290100 Sobic003G101400--Sobic001G290100 Sobic003G229500 Sobic003G229500 Sobic003G101400--Sobic003G229500 Sobic008G132600--Sobic003G101400 Sobic008G132600--Sobic003G422500 Sobic008G132600--Sobic002G411600 Sobic008G132600--Sobic003G229500 Sobic008G132600--Sobic009G191000 Sobic009G027300 Sobic009G027300 Sobic008G132600--Sobic009G027300 Sobic008G132600--Sobic007G062800 Sobic008G132600--Sobic002G008900 Sobic010G247800 Sobic010G247800 Sobic008G132600--Sobic010G247800 Sobic003G422500--Sobic002G411600 Sobic003G422500--Sobic009G191000 Sobic001G289600 Sobic001G289600 Sobic003G422500--Sobic001G289600 Sobic009G165700 Sobic009G165700 Sobic003G422500--Sobic009G165700 Sobic003G422500--Sobic002G008900 Sobic004G034900 Sobic004G034900 Sobic003G422500--Sobic004G034900 Sobic001G289800 Sobic001G289800 Sobic003G422500--Sobic001G289800 Sobic003G422500--Sobic001G540400 Sobic003G422500--Sobic008G132600 Sobic002G411600--Sobic009G191000 Sobic002G411600--Sobic003G422500 Sobic010G206900 Sobic010G206900 Sobic002G411600--Sobic010G206900 Sobic002G411600--Sobic002G008900 Sobic002G411600--Sobic004G034900 Sobic004G174200 Sobic004G174200 Sobic002G411600--Sobic004G174200 Sobic002G411600--Sobic010G247800 Sobic001G534700 Sobic001G534700 Sobic002G411600--Sobic001G534700 Sobic002G411600--Sobic003G101400 Sobic007G062800--Sobic001G540400 Sobic005G112300 Sobic005G112300 Sobic007G062800--Sobic005G112300 Sobic002G405800 Sobic002G405800 Sobic007G062800--Sobic002G405800 Sobic007G062800--Sobic002G008900 Sobic010G010700 Sobic010G010700 Sobic007G062800--Sobic010G010700 Sobic004G242400 Sobic004G242400 Sobic007G062800--Sobic004G242400 Sobic007G062800--Sobic004G034900 Sobic004G276400 Sobic004G276400 Sobic007G062800--Sobic004G276400 Sobic002G397500 Sobic002G397500 Sobic007G062800--Sobic002G397500 Sobic001G540400--Sobic001G289600 Sobic003G408600 Sobic003G408600 Sobic001G540400--Sobic003G408600 Sobic001G540400--Sobic007G062800 Sobic005G008800 Sobic005G008800 Sobic001G540400--Sobic005G008800 Sobic001G540400--Sobic004G034900 Sobic001G540400--Sobic005G112300 Sobic001G540400--Sobic003G422500 Sobic001G540400--Sobic002G397500 Sobic010G112100 Sobic010G112100 Sobic001G540400--Sobic010G112100 Sobic009G191000--Sobic002G008900 Sobic009G191000--Sobic002G411600 Sobic009G191000--Sobic003G422500 Sobic009G053900 Sobic009G053900 Sobic009G191000--Sobic009G053900 Sobic009G191000--Sobic001G289600 Sobic003G313500 Sobic003G313500 Sobic009G191000--Sobic003G313500 Sobic009G191000--Sobic010G247800 Sobic009G191000--Sobic004G034900 Sobic001G365900 Sobic001G365900 Sobic009G191000--Sobic001G365900 Sobic002G008900--Sobic009G191000 Sobic002G008900--Sobic002G411600 Sobic002G008900--Sobic007G062800 Sobic002G008900--Sobic003G422500 Sobic005G001000 Sobic005G001000 Sobic002G008900--Sobic005G001000 Sobic002G008900--Sobic010G010700 Sobic002G008900--Sobic004G034900 Sobic002G008900--Sobic010G206900 Sobic002G008900--Sobic009G053900 Sobic001G290100--Sobic003G101400 Sobic009G026500 Sobic009G026500 Sobic001G290100--Sobic009G026500 Sobic004G331100 Sobic004G331100 Sobic001G290100--Sobic004G331100 Sobic002G419800 Sobic002G419800 Sobic001G290100--Sobic002G419800 Sobic010G201500 Sobic010G201500 Sobic001G290100--Sobic010G201500 Sobic009G166300 Sobic009G166300 Sobic001G290100--Sobic009G166300 Sobic002G315200 Sobic002G315200 Sobic001G290100--Sobic002G315200 Sobic002G071500 Sobic002G071500 Sobic001G290100--Sobic002G071500 Sobic003G372700 Sobic003G372700 Sobic001G290100--Sobic003G372700 Sobic003G229500--Sobic008G132600 Sobic003G229500--Sobic007G062800 Sobic003G229500--Sobic003G101400 Sobic001G196500 Sobic001G196500 Sobic003G229500--Sobic001G196500 Sobic002G042600 Sobic002G042600 Sobic003G229500--Sobic002G042600 Sobic001G363500 Sobic001G363500 Sobic003G229500--Sobic001G363500 Sobic001G347500 Sobic001G347500 Sobic003G229500--Sobic001G347500 Sobic003G072200 Sobic003G072200 Sobic003G229500--Sobic003G072200 Sobic003G229500--Sobic001G540400
Octagon: transcription factors


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