Gene annotation
Transcriptome id Sobic.009G026500.2,Sobic.009G026500.1
Synonym Sb09g002225, SIZ1, ATSIZ1
Functional annotation ATSIZ1/SIZ1, putative, expressed
UniProt A0A1B6P649 , A0A1B6P638
Pfam PF02037 PF02891
Panther DB PTHR10782 PTHR10782:SF34
NCBI CDD KOG2169; Zn-finger transcription factor
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0016925protein sumoylation GO:0016049cell growth GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT5G60410 : DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain
RAP-DB (Rice) LOC_Os05g03430.2 : ATSIZ1/SIZ1, putative, expressed
MaizeGDB (Corn) Zm00025a029805 , Zm00025a051719 , Zm00025a028108 , Zm00025a038193 , Zm00025a051718 , Zm00025a040734 , Zm00025a041524 , Zm00025a041523 , Zm00025a006470 , Zm00025a013532 , Zm00025a033296
Brachypodium KQK07852 , KQK07855 , KQK07854 , KQK07853
Barley HORVU1Hr1G013600.5 , HORVU1Hr1G013600.4 , HORVU1Hr1G013600.7 , HORVU1Hr1G013600.6 , HORVU1Hr1G013600.1 , HORVU1Hr1G013600.3 , HORVU1Hr1G013600.2 , HORVU1Hr1G013600.9 , HORVU1Hr1G013600.8 , HORVU1Hr1G013600.24 , HORVU1Hr1G013600.26 , HORVU1Hr1G013600.20 , HORVU1Hr1G013600.21 , HORVU1Hr1G013600.22 , HORVU1Hr1G013600.23 , HORVU1Hr1G013600.11 , HORVU1Hr1G013600.10 , HORVU1Hr1G013600.13 , HORVU1Hr1G013600.12 , HORVU1Hr1G013600.15 , HORVU1Hr1G013600.14 , HORVU1Hr1G013600.17 , HORVU1Hr1G013600.16 , HORVU1Hr1G013600.19 , HORVU1Hr1G013600.18
Wheat TraesCS1D02G066700 , TraesCS1A02G065700 , TraesCS1A02G065700 , TraesCS1A02G065700 , TraesCS1A02G065700 , TraesCS1A02G065700 , TraesCS1A02G065700 , TraesCS1A02G065700 , TraesCS1D02G066700 , TraesCS1D02G066700 , TraesCS1D02G066700 , TraesCS1D02G066700 , TraesCS1D02G066700 , TraesCS1D02G066700 , TraesCS1D02G066700 , TraesCS1D02G066700 , TraesCS1D02G066700 , TraesCS1B02G083900 , TraesCS1B02G083900 , TraesCS1B02G083900 , TraesCS1B02G083900 , TraesCS1B02G083900 , TraesCS1B02G083900 , TraesCS1B02G083900 , TraesCS1B02G083900
Populus PNT18010 , PNT18011 , PNT22652 , PNT22651 , PNT22650 , PNT18009 , PNT18008 , PNT22648 , PNT18007


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cDNA sequences
Sobic.009G026500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G365900 PWWP domain containing protein, expressed -
2 Sobic.007G126600 RNA recognition motif containing protein, putative, expressed K12822: RBM25, RNA-binding protein 25
3 Sobic.008G192600 serine/threonine-protein kinase PRP4, putative, expressed K08827: serine/threonine-protein kinase PRP4
4 Sobic.001G214300 expressed protein -
5 Sobic.010G153700 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
6 Sobic.003G372700 expressed protein -
7 Sobic.001G290100 expressed protein -
8 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
9 Sobic.002G008900 sister chromatid cohesion 2, putative, expressed K06672: SCC2, cohesin loading factor subunit SCC2
10 Sobic.003G101400 transcriptional repressor, putative, expressed K11644: paired amphipathic helix protein Sin3a
11 Sobic.009G191000 MATH domain containing protein, expressed -
12 Sobic.003G119000 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
13 Sobic.001G474600 calmodulin-binding transcription activator, putative, expressed -
14 Sobic.003G029700 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -
15 Sobic.001G540400 expressed protein -
16 Sobic.001G125200 HEAT repeat family protein, putative, expressed -
17 Sobic.002G404700 expressed protein K11367: chromodomain-helicase-DNA-binding protein 1
18 Sobic.001G289600 BAH domain containing protein, putative, expressed -
19 Sobic.009G166300 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
20 Sobic.003G422500 expressed protein -


Gene co-expression network
sample Sobic009G026500 Sobic009G026500 Sobic001G365900 Sobic001G365900 Sobic009G026500--Sobic001G365900 Sobic007G126600 Sobic007G126600 Sobic009G026500--Sobic007G126600 Sobic008G192600 Sobic008G192600 Sobic009G026500--Sobic008G192600 Sobic001G214300 Sobic001G214300 Sobic009G026500--Sobic001G214300 Sobic010G153700 Sobic010G153700 Sobic009G026500--Sobic010G153700 Sobic003G372700 Sobic003G372700 Sobic009G026500--Sobic003G372700 Sobic001G290100 Sobic001G290100 Sobic009G026500--Sobic001G290100 Sobic002G006900 Sobic002G006900 Sobic009G026500--Sobic002G006900 Sobic002G008900 Sobic002G008900 Sobic009G026500--Sobic002G008900 Sobic010G206900 Sobic010G206900 Sobic001G365900--Sobic010G206900 Sobic001G534700 Sobic001G534700 Sobic001G365900--Sobic001G534700 Sobic001G289600 Sobic001G289600 Sobic001G365900--Sobic001G289600 Sobic008G130100 Sobic008G130100 Sobic001G365900--Sobic008G130100 Sobic002G411600 Sobic002G411600 Sobic001G365900--Sobic002G411600 Sobic001G365900--Sobic002G008900 Sobic009G191000 Sobic009G191000 Sobic001G365900--Sobic009G191000 Sobic004G034900 Sobic004G034900 Sobic001G365900--Sobic004G034900 Sobic001G540400 Sobic001G540400 Sobic001G365900--Sobic001G540400 Sobic007G126600--Sobic008G192600 Sobic003G119000 Sobic003G119000 Sobic007G126600--Sobic003G119000 Sobic002G404700 Sobic002G404700 Sobic007G126600--Sobic002G404700 Sobic007G065400 Sobic007G065400 Sobic007G126600--Sobic007G065400 Sobic007G126600--Sobic009G026500 Sobic007G126600--Sobic002G006900 Sobic003G108700 Sobic003G108700 Sobic007G126600--Sobic003G108700 Sobic001G347300 Sobic001G347300 Sobic007G126600--Sobic001G347300 Sobic001G241200 Sobic001G241200 Sobic007G126600--Sobic001G241200 Sobic008G192600--Sobic007G126600 Sobic008G192600--Sobic001G241200 Sobic008G192600--Sobic009G026500 Sobic008G192600--Sobic002G404700 Sobic008G192600--Sobic003G119000 Sobic008G192600--Sobic003G372700 Sobic007G117400 Sobic007G117400 Sobic008G192600--Sobic007G117400 Sobic009G138800 Sobic009G138800 Sobic008G192600--Sobic009G138800 Sobic004G314000 Sobic004G314000 Sobic008G192600--Sobic004G314000 Sobic004G341900 Sobic004G341900 Sobic001G214300--Sobic004G341900 Sobic003G148000 Sobic003G148000 Sobic001G214300--Sobic003G148000 Sobic001G214300--Sobic002G006900 Sobic005G144400 Sobic005G144400 Sobic001G214300--Sobic005G144400 Sobic003G176500 Sobic003G176500 Sobic001G214300--Sobic003G176500 Sobic003G029700 Sobic003G029700 Sobic001G214300--Sobic003G029700 Sobic002G243900 Sobic002G243900 Sobic001G214300--Sobic002G243900 Sobic006G048500 Sobic006G048500 Sobic001G214300--Sobic006G048500 Sobic007G096600 Sobic007G096600 Sobic001G214300--Sobic007G096600 Sobic002G315200 Sobic002G315200 Sobic010G153700--Sobic002G315200 Sobic010G153700--Sobic009G026500 Sobic010G153700--Sobic009G191000 Sobic001G512700 Sobic001G512700 Sobic010G153700--Sobic001G512700 Sobic010G153700--Sobic002G008900 Sobic002G134200 Sobic002G134200 Sobic010G153700--Sobic002G134200 Sobic010G153700--Sobic002G006900 Sobic001G071400 Sobic001G071400 Sobic010G153700--Sobic001G071400 Sobic010G153700--Sobic001G214300 Sobic003G372700--Sobic002G006900 Sobic003G372700--Sobic003G119000 Sobic003G372700--Sobic007G065400 Sobic005G112300 Sobic005G112300 Sobic003G372700--Sobic005G112300 Sobic002G191800 Sobic002G191800 Sobic003G372700--Sobic002G191800 Sobic009G040600 Sobic009G040600 Sobic003G372700--Sobic009G040600 Sobic002G309600 Sobic002G309600 Sobic003G372700--Sobic002G309600 Sobic003G280800 Sobic003G280800 Sobic003G372700--Sobic003G280800 Sobic001G474600 Sobic001G474600 Sobic003G372700--Sobic001G474600 Sobic003G101400 Sobic003G101400 Sobic001G290100--Sobic003G101400 Sobic001G290100--Sobic009G026500 Sobic004G331100 Sobic004G331100 Sobic001G290100--Sobic004G331100 Sobic002G419800 Sobic002G419800 Sobic001G290100--Sobic002G419800 Sobic010G201500 Sobic010G201500 Sobic001G290100--Sobic010G201500 Sobic009G166300 Sobic009G166300 Sobic001G290100--Sobic009G166300 Sobic001G290100--Sobic002G315200 Sobic002G071500 Sobic002G071500 Sobic001G290100--Sobic002G071500 Sobic001G290100--Sobic003G372700 Sobic008G047800 Sobic008G047800 Sobic002G006900--Sobic008G047800 Sobic002G006900--Sobic007G065400 Sobic003G200200 Sobic003G200200 Sobic002G006900--Sobic003G200200 Sobic002G006900--Sobic003G372700 Sobic002G006900--Sobic009G040600 Sobic001G155000 Sobic001G155000 Sobic002G006900--Sobic001G155000 Sobic002G006900--Sobic002G309600 Sobic002G006900--Sobic001G214300 Sobic002G006900--Sobic001G512700 Sobic002G008900--Sobic009G191000 Sobic002G008900--Sobic002G411600 Sobic007G062800 Sobic007G062800 Sobic002G008900--Sobic007G062800 Sobic003G422500 Sobic003G422500 Sobic002G008900--Sobic003G422500 Sobic005G001000 Sobic005G001000 Sobic002G008900--Sobic005G001000 Sobic010G010700 Sobic010G010700 Sobic002G008900--Sobic010G010700 Sobic002G008900--Sobic004G034900 Sobic002G008900--Sobic010G206900 Sobic009G053900 Sobic009G053900 Sobic002G008900--Sobic009G053900
Octagon: transcription factors


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