Gene annotation
Transcriptome id Sobic.003G029700.1
Synonym Sb03g002790
Functional annotation CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed
UniProt C5XLU6
Pfam PF00069
Panther DB PTHR11909 PTHR11909:SF185
NCBI CDD KOG1164; Casein kinase (serine/threonine/tyrosine protein kinase)
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT2G25760 : Protein kinase family protein
RAP-DB (Rice) LOC_Os05g11140.2 : CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed
MaizeGDB (Corn) Zm00025a035839 , Zm00025a022954 , Zm00025a043148 , Zm00025a019268
Brachypodium KQK07093 , KQK03179
Barley HORVU3Hr1G027270.5 , HORVU3Hr1G027270.4 , HORVU3Hr1G027270.7 , HORVU3Hr1G027270.6 , HORVU3Hr1G027270.1 , HORVU3Hr1G027270.3 , HORVU3Hr1G027270.2 , HORVU3Hr1G027270.9 , HORVU3Hr1G027270.8 , HORVU1Hr1G028450.14 , HORVU1Hr1G028450.17 , HORVU1Hr1G028450.10 , HORVU3Hr1G027270.11 , HORVU3Hr1G027270.10 , HORVU3Hr1G027270.12 , HORVU1Hr1G028450.15 , HORVU1Hr1G028450.16 , HORVU1Hr1G028450.11 , HORVU1Hr1G028450.12 , HORVU1Hr1G028450.13 , HORVU1Hr1G028450.18 , HORVU1Hr1G028450.19 , HORVU1Hr1G028450.21 , HORVU1Hr1G028450.20 , HORVU1Hr1G028450.22 , HORVU1Hr1G028450.8 , HORVU1Hr1G028450.9 , HORVU1Hr1G028450.6 , HORVU1Hr1G028450.4 , HORVU1Hr1G028450.5 , HORVU1Hr1G028450.2 , HORVU1Hr1G028450.3 , HORVU1Hr1G028450.1 , HORVU1Hr1G028450.7
Wheat TraesCS1D02G130400 , TraesCS1D02G130400 , TraesCS1D02G130400 , TraesCS1D02G130400 , TraesCS3A02G311600 , TraesCS3A02G311600 , TraesCS3A02G311600 , TraesCS1B02G143100 , TraesCS1B02G143100 , TraesCS1B02G143100 , TraesCS1B02G143100 , TraesCS1B02G143100 , TraesCS3B02G160600 , TraesCS3B02G160600 , TraesCS3D02G142700 , TraesCS3D02G142700 , TraesCS1A02G123900 , TraesCS1A02G123900 , TraesCS1A02G123900 , TraesCS1A02G123900 , TraesCS1A02G123900 , TraesCS1A02G123900
Populus -


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cDNA sequences
Sobic.003G029700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G341900 lecithine cholesterol acyltransferase, putative, expressed -
2 Sobic.001G214300 expressed protein -
3 Sobic.010G013800 START domain containing protein, expressed -
4 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
5 Sobic.001G497300 protein kinase domain containing protein, expressed -
6 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
7 Sobic.009G026500 ATSIZ1/SIZ1, putative, expressed -
8 Sobic.009G191000 MATH domain containing protein, expressed -
9 Sobic.001G205200 expressed protein -
10 Sobic.001G365900 PWWP domain containing protein, expressed -
11 Sobic.006G237400 cyclic nucleotide-gated ion channel, putative, expressed K05391: cyclic nucleotide gated channel, plant
12 Sobic.001G318432 - -
13 Sobic.001G220300 serine/threonine-protein phosphatase 2A regulatory subunit B subunitbeta, putative, expressed K11583: serine/threonine-protein phosphatase 2A regulatory subunit B''
14 Sobic.002G133400 CTR1-like protein kinase, putative, expressed K14510: serine/threonine-protein kinase CTR1
15 Sobic.010G101800 dynamin, putative, expressed K01528: dynamin 1/3
16 Sobic.001G512700 myb/SANT domain protein, putative, expressed -
17 Sobic.002G411600 CW-type Zinc Finger, putative, expressed -
18 Sobic.006G048600 - -
19 Sobic.004G205800 cyclin-dependent kinase G-1, putative, expressed K08818: cell division cycle 2-like
20 Sobic.001G451400 HEAT repeat family protein, putative, expressed K15305: VAC14, vacuole morphology and inheritance protein 14


Gene co-expression network
sample Sobic003G029700 Sobic003G029700 Sobic004G341900 Sobic004G341900 Sobic003G029700--Sobic004G341900 Sobic001G214300 Sobic001G214300 Sobic003G029700--Sobic001G214300 Sobic010G013800 Sobic010G013800 Sobic003G029700--Sobic010G013800 Sobic008G047800 Sobic008G047800 Sobic003G029700--Sobic008G047800 Sobic001G497300 Sobic001G497300 Sobic003G029700--Sobic001G497300 Sobic002G006900 Sobic002G006900 Sobic003G029700--Sobic002G006900 Sobic009G026500 Sobic009G026500 Sobic003G029700--Sobic009G026500 Sobic009G191000 Sobic009G191000 Sobic003G029700--Sobic009G191000 Sobic001G205200 Sobic001G205200 Sobic003G029700--Sobic001G205200 Sobic004G341900--Sobic001G214300 Sobic004G341900--Sobic003G029700 Sobic004G341900--Sobic002G006900 Sobic004G341900--Sobic010G013800 Sobic003G176500 Sobic003G176500 Sobic004G341900--Sobic003G176500 Sobic004G341900--Sobic009G191000 Sobic004G341900--Sobic009G026500 Sobic008G188900 Sobic008G188900 Sobic004G341900--Sobic008G188900 Sobic006G048600 Sobic006G048600 Sobic004G341900--Sobic006G048600 Sobic001G214300--Sobic004G341900 Sobic003G148000 Sobic003G148000 Sobic001G214300--Sobic003G148000 Sobic001G214300--Sobic002G006900 Sobic005G144400 Sobic005G144400 Sobic001G214300--Sobic005G144400 Sobic001G214300--Sobic003G176500 Sobic001G214300--Sobic003G029700 Sobic002G243900 Sobic002G243900 Sobic001G214300--Sobic002G243900 Sobic006G048500 Sobic006G048500 Sobic001G214300--Sobic006G048500 Sobic007G096600 Sobic007G096600 Sobic001G214300--Sobic007G096600 Sobic010G013800--Sobic004G341900 Sobic010G013800--Sobic003G029700 Sobic010G013800--Sobic008G188900 Sobic001G318432 Sobic001G318432 Sobic010G013800--Sobic001G318432 Sobic010G013800--Sobic001G214300 Sobic010G013800--Sobic009G191000 Sobic003G229300 Sobic003G229300 Sobic010G013800--Sobic003G229300 Sobic010G013800--Sobic006G048600 Sobic002G411600 Sobic002G411600 Sobic010G013800--Sobic002G411600 Sobic008G047800--Sobic002G006900 Sobic004G084300 Sobic004G084300 Sobic008G047800--Sobic004G084300 Sobic001G512700 Sobic001G512700 Sobic008G047800--Sobic001G512700 Sobic001G155000 Sobic001G155000 Sobic008G047800--Sobic001G155000 Sobic009G040600 Sobic009G040600 Sobic008G047800--Sobic009G040600 Sobic007G011300 Sobic007G011300 Sobic008G047800--Sobic007G011300 Sobic007G217000 Sobic007G217000 Sobic008G047800--Sobic007G217000 Sobic004G274200 Sobic004G274200 Sobic008G047800--Sobic004G274200 Sobic002G309600 Sobic002G309600 Sobic008G047800--Sobic002G309600 Sobic007G104800 Sobic007G104800 Sobic001G497300--Sobic007G104800 Sobic001G497300--Sobic001G512700 Sobic001G497300--Sobic002G006900 Sobic006G237400 Sobic006G237400 Sobic001G497300--Sobic006G237400 Sobic004G205600 Sobic004G205600 Sobic001G497300--Sobic004G205600 Sobic001G413500 Sobic001G413500 Sobic001G497300--Sobic001G413500 Sobic001G497300--Sobic008G047800 Sobic005G023900 Sobic005G023900 Sobic001G497300--Sobic005G023900 Sobic002G157000 Sobic002G157000 Sobic001G497300--Sobic002G157000 Sobic002G006900--Sobic008G047800 Sobic007G065400 Sobic007G065400 Sobic002G006900--Sobic007G065400 Sobic003G200200 Sobic003G200200 Sobic002G006900--Sobic003G200200 Sobic003G372700 Sobic003G372700 Sobic002G006900--Sobic003G372700 Sobic002G006900--Sobic009G040600 Sobic002G006900--Sobic001G155000 Sobic002G006900--Sobic002G309600 Sobic002G006900--Sobic001G214300 Sobic002G006900--Sobic001G512700 Sobic001G365900 Sobic001G365900 Sobic009G026500--Sobic001G365900 Sobic007G126600 Sobic007G126600 Sobic009G026500--Sobic007G126600 Sobic008G192600 Sobic008G192600 Sobic009G026500--Sobic008G192600 Sobic009G026500--Sobic001G214300 Sobic010G153700 Sobic010G153700 Sobic009G026500--Sobic010G153700 Sobic009G026500--Sobic003G372700 Sobic001G290100 Sobic001G290100 Sobic009G026500--Sobic001G290100 Sobic009G026500--Sobic002G006900 Sobic002G008900 Sobic002G008900 Sobic009G026500--Sobic002G008900 Sobic009G191000--Sobic002G008900 Sobic009G191000--Sobic002G411600 Sobic003G422500 Sobic003G422500 Sobic009G191000--Sobic003G422500 Sobic009G053900 Sobic009G053900 Sobic009G191000--Sobic009G053900 Sobic001G289600 Sobic001G289600 Sobic009G191000--Sobic001G289600 Sobic003G313500 Sobic003G313500 Sobic009G191000--Sobic003G313500 Sobic010G247800 Sobic010G247800 Sobic009G191000--Sobic010G247800 Sobic004G034900 Sobic004G034900 Sobic009G191000--Sobic004G034900 Sobic009G191000--Sobic001G365900 Sobic001G205200--Sobic006G048500 Sobic001G205200--Sobic002G006900 Sobic001G205200--Sobic003G372700 Sobic002G297200 Sobic002G297200 Sobic001G205200--Sobic002G297200 Sobic004G007100 Sobic004G007100 Sobic001G205200--Sobic004G007100 Sobic001G205200--Sobic002G309600 Sobic003G087400 Sobic003G087400 Sobic001G205200--Sobic003G087400 Sobic007G167500 Sobic007G167500 Sobic001G205200--Sobic007G167500 Sobic001G205200--Sobic003G029700
Octagon: transcription factors


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