Gene annotation
Transcriptome id Sobic.002G133400.3,Sobic.002G133400.5,Sobic.002G133400.6,Sobic.002G133400.4,Sobic.002G133400.7,Sobic.002G133400.2
Synonym AtCTR1, CTR1, SIS1, Sb02g011690
Functional annotation CTR1-like protein kinase, putative, expressed
UniProt A0A1W0W3Q9
Pfam PF07714 PF14381
Panther DB PTHR23257 PTHR23257:SF384
NCBI CDD KOG0192; Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs
KEGG Orthology K14510; serine/threonine-protein kinase CTR1
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT5G03730 : Protein kinase superfamily protein
RAP-DB (Rice) LOC_Os09g39320.1 : CTR1-like protein kinase, putative, expressed
MaizeGDB (Corn) Zm00025a013498
Brachypodium KQJ91573
Barley HORVU4Hr1G001850.8 , HORVU4Hr1G001850.9 , HORVU4Hr1G001850.6 , HORVU4Hr1G001850.7 , HORVU4Hr1G001850.4 , HORVU4Hr1G001850.5 , HORVU4Hr1G001850.2 , HORVU4Hr1G001850.3 , HORVU4Hr1G001850.1 , HORVU4Hr1G001850.10
Wheat TraesCS4A02G302000 , TraesCS4D02G010200 , TraesCS4B02G012100
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G133400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G216800 AAA family ATPase, putative, expressed K13339: PEX6, peroxin-6
2 Sobic.002G134200 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
3 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
4 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
5 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11
6 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
7 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1
8 Sobic.001G036050 - -
9 Sobic.006G048500 - -
10 Sobic.002G180666 - -
11 Sobic.001G456900 expressed protein -
12 Sobic.003G148000 zinc finger, C3HC4 type domain containing protein, expressed K10666: E3 ubiquitin-protein ligase RNF5
13 Sobic.002G343901 - -
14 Sobic.007G167500 expressed protein -
15 Sobic.004G240800 protein kinase domain containing protein, expressed -
16 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
17 Sobic.003G332800 GTPase-activating protein, putative, expressed -
18 Sobic.007G126600 RNA recognition motif containing protein, putative, expressed K12822: RBM25, RNA-binding protein 25
19 Sobic.010G153700 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
20 Sobic.003G119000 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2


Gene co-expression network
sample Sobic002G133400 Sobic002G133400 Sobic006G216800 Sobic006G216800 Sobic002G133400--Sobic006G216800 Sobic002G134200 Sobic002G134200 Sobic002G133400--Sobic002G134200 Sobic002G006900 Sobic002G006900 Sobic002G133400--Sobic002G006900 Sobic008G047800 Sobic008G047800 Sobic002G133400--Sobic008G047800 Sobic007G065400 Sobic007G065400 Sobic002G133400--Sobic007G065400 Sobic002G309600 Sobic002G309600 Sobic002G133400--Sobic002G309600 Sobic010G139000 Sobic010G139000 Sobic002G133400--Sobic010G139000 Sobic001G036050 Sobic001G036050 Sobic002G133400--Sobic001G036050 Sobic006G048500 Sobic006G048500 Sobic002G133400--Sobic006G048500 Sobic006G216800--Sobic002G133400 Sobic007G116200 Sobic007G116200 Sobic006G216800--Sobic007G116200 Sobic006G216800--Sobic002G309600 Sobic006G216800--Sobic002G134200 Sobic003G332800 Sobic003G332800 Sobic006G216800--Sobic003G332800 Sobic005G112300 Sobic005G112300 Sobic006G216800--Sobic005G112300 Sobic003G280800 Sobic003G280800 Sobic006G216800--Sobic003G280800 Sobic006G216800--Sobic010G139000 Sobic010G277500 Sobic010G277500 Sobic006G216800--Sobic010G277500 Sobic001G071400 Sobic001G071400 Sobic002G134200--Sobic001G071400 Sobic002G134200--Sobic002G309600 Sobic002G134200--Sobic003G280800 Sobic002G134200--Sobic006G216800 Sobic002G134200--Sobic002G133400 Sobic002G134200--Sobic008G047800 Sobic005G008800 Sobic005G008800 Sobic002G134200--Sobic005G008800 Sobic009G191000 Sobic009G191000 Sobic002G134200--Sobic009G191000 Sobic002G008900 Sobic002G008900 Sobic002G134200--Sobic002G008900 Sobic002G006900--Sobic008G047800 Sobic002G006900--Sobic007G065400 Sobic003G200200 Sobic003G200200 Sobic002G006900--Sobic003G200200 Sobic003G372700 Sobic003G372700 Sobic002G006900--Sobic003G372700 Sobic009G040600 Sobic009G040600 Sobic002G006900--Sobic009G040600 Sobic001G155000 Sobic001G155000 Sobic002G006900--Sobic001G155000 Sobic002G006900--Sobic002G309600 Sobic001G214300 Sobic001G214300 Sobic002G006900--Sobic001G214300 Sobic001G512700 Sobic001G512700 Sobic002G006900--Sobic001G512700 Sobic008G047800--Sobic002G006900 Sobic004G084300 Sobic004G084300 Sobic008G047800--Sobic004G084300 Sobic008G047800--Sobic001G512700 Sobic008G047800--Sobic001G155000 Sobic008G047800--Sobic009G040600 Sobic007G011300 Sobic007G011300 Sobic008G047800--Sobic007G011300 Sobic007G217000 Sobic007G217000 Sobic008G047800--Sobic007G217000 Sobic004G274200 Sobic004G274200 Sobic008G047800--Sobic004G274200 Sobic008G047800--Sobic002G309600 Sobic007G065400--Sobic002G006900 Sobic002G191800 Sobic002G191800 Sobic007G065400--Sobic002G191800 Sobic008G009700 Sobic008G009700 Sobic007G065400--Sobic008G009700 Sobic007G065400--Sobic009G040600 Sobic004G145500 Sobic004G145500 Sobic007G065400--Sobic004G145500 Sobic009G210500 Sobic009G210500 Sobic007G065400--Sobic009G210500 Sobic003G119000 Sobic003G119000 Sobic007G065400--Sobic003G119000 Sobic007G065400--Sobic003G372700 Sobic008G028700 Sobic008G028700 Sobic007G065400--Sobic008G028700 Sobic002G309600--Sobic003G280800 Sobic002G309600--Sobic002G134200 Sobic007G117400 Sobic007G117400 Sobic002G309600--Sobic007G117400 Sobic002G309600--Sobic008G009700 Sobic002G309600--Sobic001G071400 Sobic002G309600--Sobic005G112300 Sobic004G065100 Sobic004G065100 Sobic002G309600--Sobic004G065100 Sobic001G154900 Sobic001G154900 Sobic002G309600--Sobic001G154900 Sobic002G309600--Sobic002G006900 Sobic004G314000 Sobic004G314000 Sobic010G139000--Sobic004G314000 Sobic010G139000--Sobic005G112300 Sobic010G279450 Sobic010G279450 Sobic010G139000--Sobic010G279450 Sobic010G206900 Sobic010G206900 Sobic010G139000--Sobic010G206900 Sobic001G311500 Sobic001G311500 Sobic010G139000--Sobic001G311500 Sobic010G139000--Sobic001G036050 Sobic010G112100 Sobic010G112100 Sobic010G139000--Sobic010G112100 Sobic010G010700 Sobic010G010700 Sobic010G139000--Sobic010G010700 Sobic010G139000--Sobic005G008800 Sobic001G036050--Sobic010G139000 Sobic001G456900 Sobic001G456900 Sobic001G036050--Sobic001G456900 Sobic004G096600 Sobic004G096600 Sobic001G036050--Sobic004G096600 Sobic001G036050--Sobic002G133400 Sobic001G036050--Sobic006G216800 Sobic001G036050--Sobic004G314000 Sobic004G258700 Sobic004G258700 Sobic001G036050--Sobic004G258700 Sobic010G123600 Sobic010G123600 Sobic001G036050--Sobic010G123600 Sobic003G170900 Sobic003G170900 Sobic001G036050--Sobic003G170900 Sobic004G007100 Sobic004G007100 Sobic006G048500--Sobic004G007100 Sobic005G144400 Sobic005G144400 Sobic006G048500--Sobic005G144400 Sobic002G145101 Sobic002G145101 Sobic006G048500--Sobic002G145101 Sobic003G148000 Sobic003G148000 Sobic006G048500--Sobic003G148000 Sobic003G429650 Sobic003G429650 Sobic006G048500--Sobic003G429650 Sobic002G243900 Sobic002G243900 Sobic006G048500--Sobic002G243900 Sobic006G048600 Sobic006G048600 Sobic006G048500--Sobic006G048600 Sobic006G048500--Sobic002G006900 Sobic006G182900 Sobic006G182900 Sobic006G048500--Sobic006G182900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.