Gene annotation
Transcriptome id Sobic.010G153700.2,Sobic.010G153700.3
Synonym ATCNGC1, Sb10g020550, CNGC1
Functional annotation cyclic nucleotide-gated ion channel 1, putative, expressed
UniProt A0A1W0VTB0
Pfam PF00520
Panther DB PTHR10217 PTHR10217:SF524
NCBI CDD -
KEGG Orthology K05391; cyclic nucleotide gated channel, plant
Gene Ontology GO:0016020; membrane GO:0006811ion transport GO:0005216ion channel activity


Orthologs (automatic annotation)
TAIR AT5G53130 : cyclic nucleotide gated channel 1
RAP-DB (Rice) LOC_Os06g33570.1 : cyclic nucleotide-gated ion channel 1, putative, expressed
MaizeGDB (Corn) Zm00025a042363
Brachypodium -
Barley HORVU7Hr1G079400.1 , HORVU7Hr1G079400.3 , HORVU7Hr1G079400.2 , HORVU7Hr1G079400.4 , HORVU7Hr1G079400.7 , HORVU7Hr1G079400.6 , HORVU7Hr1G079400.8
Wheat TraesCS7B02G232600 , TraesCS7D02G328400 , TraesCS7D02G328400 , TraesCS7D02G328400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G315200 DNA-binding bromodomain-containing protein, putative, expressed -
2 Sobic.009G026500 ATSIZ1/SIZ1, putative, expressed -
3 Sobic.009G191000 MATH domain containing protein, expressed -
4 Sobic.001G512700 myb/SANT domain protein, putative, expressed -
5 Sobic.002G008900 sister chromatid cohesion 2, putative, expressed K06672: SCC2, cohesin loading factor subunit SCC2
6 Sobic.002G134200 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
7 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
8 Sobic.001G071400 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
9 Sobic.001G214300 expressed protein -
10 Sobic.004G341900 lecithine cholesterol acyltransferase, putative, expressed -
11 Sobic.002G133400 CTR1-like protein kinase, putative, expressed K14510: serine/threonine-protein kinase CTR1
12 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
13 Sobic.001G289600 BAH domain containing protein, putative, expressed -
14 Sobic.001G365900 PWWP domain containing protein, expressed -
15 Sobic.002G419800 structural constituent of ribosome, putative, expressed -
16 Sobic.002G399100 zinc finger, RING-type, putative, expressed K15688: E3 ubiquitin-protein ligase MUL1
17 Sobic.001G290100 expressed protein -
18 Sobic.001G497300 protein kinase domain containing protein, expressed -
19 Sobic.006G237400 cyclic nucleotide-gated ion channel, putative, expressed K05391: cyclic nucleotide gated channel, plant
20 Sobic.003G372700 expressed protein -


Gene co-expression network
sample Sobic010G153700 Sobic010G153700 Sobic002G315200 Sobic002G315200 Sobic010G153700--Sobic002G315200 Sobic009G026500 Sobic009G026500 Sobic010G153700--Sobic009G026500 Sobic009G191000 Sobic009G191000 Sobic010G153700--Sobic009G191000 Sobic001G512700 Sobic001G512700 Sobic010G153700--Sobic001G512700 Sobic002G008900 Sobic002G008900 Sobic010G153700--Sobic002G008900 Sobic002G134200 Sobic002G134200 Sobic010G153700--Sobic002G134200 Sobic002G006900 Sobic002G006900 Sobic010G153700--Sobic002G006900 Sobic001G071400 Sobic001G071400 Sobic010G153700--Sobic001G071400 Sobic001G214300 Sobic001G214300 Sobic010G153700--Sobic001G214300 Sobic002G315200--Sobic010G153700 Sobic002G315200--Sobic002G006900 Sobic002G315200--Sobic001G071400 Sobic008G047800 Sobic008G047800 Sobic002G315200--Sobic008G047800 Sobic001G220300 Sobic001G220300 Sobic002G315200--Sobic001G220300 Sobic002G315200--Sobic001G512700 Sobic002G315200--Sobic009G191000 Sobic001G290100 Sobic001G290100 Sobic002G315200--Sobic001G290100 Sobic001G497300 Sobic001G497300 Sobic002G315200--Sobic001G497300 Sobic001G365900 Sobic001G365900 Sobic009G026500--Sobic001G365900 Sobic007G126600 Sobic007G126600 Sobic009G026500--Sobic007G126600 Sobic008G192600 Sobic008G192600 Sobic009G026500--Sobic008G192600 Sobic009G026500--Sobic001G214300 Sobic009G026500--Sobic010G153700 Sobic003G372700 Sobic003G372700 Sobic009G026500--Sobic003G372700 Sobic009G026500--Sobic001G290100 Sobic009G026500--Sobic002G006900 Sobic009G026500--Sobic002G008900 Sobic009G191000--Sobic002G008900 Sobic002G411600 Sobic002G411600 Sobic009G191000--Sobic002G411600 Sobic003G422500 Sobic003G422500 Sobic009G191000--Sobic003G422500 Sobic009G053900 Sobic009G053900 Sobic009G191000--Sobic009G053900 Sobic001G289600 Sobic001G289600 Sobic009G191000--Sobic001G289600 Sobic003G313500 Sobic003G313500 Sobic009G191000--Sobic003G313500 Sobic010G247800 Sobic010G247800 Sobic009G191000--Sobic010G247800 Sobic004G034900 Sobic004G034900 Sobic009G191000--Sobic004G034900 Sobic009G191000--Sobic001G365900 Sobic001G512700--Sobic008G047800 Sobic001G512700--Sobic002G006900 Sobic003G248200 Sobic003G248200 Sobic001G512700--Sobic003G248200 Sobic001G512700--Sobic001G497300 Sobic007G118600 Sobic007G118600 Sobic001G512700--Sobic007G118600 Sobic004G021100 Sobic004G021100 Sobic001G512700--Sobic004G021100 Sobic005G045300 Sobic005G045300 Sobic001G512700--Sobic005G045300 Sobic002G297200 Sobic002G297200 Sobic001G512700--Sobic002G297200 Sobic008G067600 Sobic008G067600 Sobic001G512700--Sobic008G067600 Sobic002G008900--Sobic009G191000 Sobic002G008900--Sobic002G411600 Sobic007G062800 Sobic007G062800 Sobic002G008900--Sobic007G062800 Sobic002G008900--Sobic003G422500 Sobic005G001000 Sobic005G001000 Sobic002G008900--Sobic005G001000 Sobic010G010700 Sobic010G010700 Sobic002G008900--Sobic010G010700 Sobic002G008900--Sobic004G034900 Sobic010G206900 Sobic010G206900 Sobic002G008900--Sobic010G206900 Sobic002G008900--Sobic009G053900 Sobic002G134200--Sobic001G071400 Sobic002G309600 Sobic002G309600 Sobic002G134200--Sobic002G309600 Sobic003G280800 Sobic003G280800 Sobic002G134200--Sobic003G280800 Sobic006G216800 Sobic006G216800 Sobic002G134200--Sobic006G216800 Sobic002G133400 Sobic002G133400 Sobic002G134200--Sobic002G133400 Sobic002G134200--Sobic008G047800 Sobic005G008800 Sobic005G008800 Sobic002G134200--Sobic005G008800 Sobic002G134200--Sobic009G191000 Sobic002G134200--Sobic002G008900 Sobic002G006900--Sobic008G047800 Sobic007G065400 Sobic007G065400 Sobic002G006900--Sobic007G065400 Sobic003G200200 Sobic003G200200 Sobic002G006900--Sobic003G200200 Sobic002G006900--Sobic003G372700 Sobic009G040600 Sobic009G040600 Sobic002G006900--Sobic009G040600 Sobic001G155000 Sobic001G155000 Sobic002G006900--Sobic001G155000 Sobic002G006900--Sobic002G309600 Sobic002G006900--Sobic001G214300 Sobic002G006900--Sobic001G512700 Sobic001G071400--Sobic002G134200 Sobic001G071400--Sobic002G309600 Sobic001G071400--Sobic003G280800 Sobic001G071400--Sobic008G047800 Sobic001G071400--Sobic009G191000 Sobic001G219600 Sobic001G219600 Sobic001G071400--Sobic001G219600 Sobic005G112300 Sobic005G112300 Sobic001G071400--Sobic005G112300 Sobic001G071400--Sobic002G315200 Sobic001G071400--Sobic002G008900 Sobic004G341900 Sobic004G341900 Sobic001G214300--Sobic004G341900 Sobic003G148000 Sobic003G148000 Sobic001G214300--Sobic003G148000 Sobic001G214300--Sobic002G006900 Sobic005G144400 Sobic005G144400 Sobic001G214300--Sobic005G144400 Sobic003G176500 Sobic003G176500 Sobic001G214300--Sobic003G176500 Sobic003G029700 Sobic003G029700 Sobic001G214300--Sobic003G029700 Sobic002G243900 Sobic002G243900 Sobic001G214300--Sobic002G243900 Sobic006G048500 Sobic006G048500 Sobic001G214300--Sobic006G048500 Sobic007G096600 Sobic007G096600 Sobic001G214300--Sobic007G096600
Octagon: transcription factors


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