Gene annotation
Transcriptome id Sobic.002G419800.1
Synonym MED33A, RFR1, Sb02g043150
Functional annotation structural constituent of ribosome, putative, expressed
UniProt C5X5N5
Pfam -
Panther DB PTHR33739 PTHR33739:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G23590 : REF4-related 1
RAP-DB (Rice) LOC_Os07g48350.1 : structural constituent of ribosome, putative, expressed
MaizeGDB (Corn) Zm00025a043284 , Zm00025a049177 , Zm00025a015453
Brachypodium KQK14607 , KQK14608 , KQK14609
Barley HORVU0Hr1G039270.1 , HORVU0Hr1G039270.3 , HORVU0Hr1G039270.2 , HORVU0Hr1G039270.5 , HORVU0Hr1G039270.4 , HORVU0Hr1G039270.7 , HORVU0Hr1G039270.6 , HORVU0Hr1G039270.9 , HORVU0Hr1G039270.8 , HORVU0Hr1G039270.11 , HORVU0Hr1G039270.10 , HORVU0Hr1G039270.12
Wheat TraesCS2D02G103300 , TraesCS2B02G120800 , TraesCS2B02G120800 , TraesCS2B02G120800 , TraesCS2B02G120800 , TraesCS2A02G103500 , TraesCS2A02G103500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G331100 WD domain and HEAT domain containing protein, putative, expressed K08333: PIK3R4, phosphoinositide-3-kinase, regulatory subunit 4
2 Sobic.001G050200 expressed protein -
3 Sobic.009G027300 MYB family transcription factor, putative, expressed K04650: NCOR1, nuclear receptor co-repressor 1
4 Sobic.007G075400 expressed protein -
5 Sobic.001G290100 expressed protein -
6 Sobic.007G172400 AAA-type ATPase family protein, putative, expressed K13338: peroxin-1
7 Sobic.001G289600 BAH domain containing protein, putative, expressed -
8 Sobic.007G024700 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
9 Sobic.007G105100 STE_MEK_ste7_MAP2K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04368: MAP2K1, mitogen-activated protein kinase kinase 1
10 Sobic.003G118200 phosphoadenosine phosphosulfate, putative, expressed -
11 Sobic.001G540400 expressed protein -
12 Sobic.004G329400 formin, putative, expressed -
13 Sobic.001G109800 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
14 Sobic.004G264400 TBC domain containing protein, expressed -
15 Sobic.002G071500 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3
16 Sobic.003G101400 transcriptional repressor, putative, expressed K11644: paired amphipathic helix protein Sin3a
17 Sobic.010G153700 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
18 Sobic.004G347400 pumilio-family RNA binding protein, putative, expressed K17943: pumilio RNA-binding family
19 Sobic.001G058700 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
20 Sobic.009G191000 MATH domain containing protein, expressed -


Gene co-expression network
sample Sobic002G419800 Sobic002G419800 Sobic004G331100 Sobic004G331100 Sobic002G419800--Sobic004G331100 Sobic001G050200 Sobic001G050200 Sobic002G419800--Sobic001G050200 Sobic009G027300 Sobic009G027300 Sobic002G419800--Sobic009G027300 Sobic007G075400 Sobic007G075400 Sobic002G419800--Sobic007G075400 Sobic001G290100 Sobic001G290100 Sobic002G419800--Sobic001G290100 Sobic007G172400 Sobic007G172400 Sobic002G419800--Sobic007G172400 Sobic001G289600 Sobic001G289600 Sobic002G419800--Sobic001G289600 Sobic007G024700 Sobic007G024700 Sobic002G419800--Sobic007G024700 Sobic007G105100 Sobic007G105100 Sobic002G419800--Sobic007G105100 Sobic004G331100--Sobic007G075400 Sobic004G331100--Sobic009G027300 Sobic004G331100--Sobic002G419800 Sobic003G101400 Sobic003G101400 Sobic004G331100--Sobic003G101400 Sobic004G331100--Sobic001G290100 Sobic004G331100--Sobic001G050200 Sobic004G347400 Sobic004G347400 Sobic004G331100--Sobic004G347400 Sobic003G118200 Sobic003G118200 Sobic004G331100--Sobic003G118200 Sobic004G065000 Sobic004G065000 Sobic004G331100--Sobic004G065000 Sobic001G050200--Sobic002G419800 Sobic003G422500 Sobic003G422500 Sobic001G050200--Sobic003G422500 Sobic001G050200--Sobic009G027300 Sobic003G247300 Sobic003G247300 Sobic001G050200--Sobic003G247300 Sobic009G191000 Sobic009G191000 Sobic001G050200--Sobic009G191000 Sobic001G050200--Sobic007G075400 Sobic004G269200 Sobic004G269200 Sobic001G050200--Sobic004G269200 Sobic001G050200--Sobic004G331100 Sobic001G050200--Sobic003G101400 Sobic008G132600 Sobic008G132600 Sobic009G027300--Sobic008G132600 Sobic002G045600 Sobic002G045600 Sobic009G027300--Sobic002G045600 Sobic009G027300--Sobic004G331100 Sobic009G027300--Sobic003G422500 Sobic002G008900 Sobic002G008900 Sobic009G027300--Sobic002G008900 Sobic009G027300--Sobic003G101400 Sobic009G027300--Sobic001G050200 Sobic009G027300--Sobic009G191000 Sobic009G027300--Sobic007G075400 Sobic010G139600 Sobic010G139600 Sobic007G075400--Sobic010G139600 Sobic009G053900 Sobic009G053900 Sobic007G075400--Sobic009G053900 Sobic007G075400--Sobic004G331100 Sobic007G075400--Sobic002G008900 Sobic007G075400--Sobic009G191000 Sobic002G146300 Sobic002G146300 Sobic007G075400--Sobic002G146300 Sobic007G075400--Sobic003G422500 Sobic003G313500 Sobic003G313500 Sobic007G075400--Sobic003G313500 Sobic007G075400--Sobic004G065000 Sobic001G290100--Sobic003G101400 Sobic009G026500 Sobic009G026500 Sobic001G290100--Sobic009G026500 Sobic001G290100--Sobic004G331100 Sobic001G290100--Sobic002G419800 Sobic010G201500 Sobic010G201500 Sobic001G290100--Sobic010G201500 Sobic009G166300 Sobic009G166300 Sobic001G290100--Sobic009G166300 Sobic002G315200 Sobic002G315200 Sobic001G290100--Sobic002G315200 Sobic002G071500 Sobic002G071500 Sobic001G290100--Sobic002G071500 Sobic003G372700 Sobic003G372700 Sobic001G290100--Sobic003G372700 Sobic001G058700 Sobic001G058700 Sobic007G172400--Sobic001G058700 Sobic007G172400--Sobic002G071500 Sobic001G050600 Sobic001G050600 Sobic007G172400--Sobic001G050600 Sobic007G172400--Sobic004G347400 Sobic007G172400--Sobic002G419800 Sobic001G219900 Sobic001G219900 Sobic007G172400--Sobic001G219900 Sobic004G113400 Sobic004G113400 Sobic007G172400--Sobic004G113400 Sobic001G474600 Sobic001G474600 Sobic007G172400--Sobic001G474600 Sobic003G408600 Sobic003G408600 Sobic007G172400--Sobic003G408600 Sobic001G540400 Sobic001G540400 Sobic001G289600--Sobic001G540400 Sobic004G034900 Sobic004G034900 Sobic001G289600--Sobic004G034900 Sobic001G289800 Sobic001G289800 Sobic001G289600--Sobic001G289800 Sobic001G289600--Sobic003G422500 Sobic001G365900 Sobic001G365900 Sobic001G289600--Sobic001G365900 Sobic001G289600--Sobic009G191000 Sobic005G008800 Sobic005G008800 Sobic001G289600--Sobic005G008800 Sobic001G289600--Sobic007G105100 Sobic010G010700 Sobic010G010700 Sobic001G289600--Sobic010G010700 Sobic002G270500 Sobic002G270500 Sobic007G024700--Sobic002G270500 Sobic009G094300 Sobic009G094300 Sobic007G024700--Sobic009G094300 Sobic009G249200 Sobic009G249200 Sobic007G024700--Sobic009G249200 Sobic004G052900 Sobic004G052900 Sobic007G024700--Sobic004G052900 Sobic001G270400 Sobic001G270400 Sobic007G024700--Sobic001G270400 Sobic004G264400 Sobic004G264400 Sobic007G024700--Sobic004G264400 Sobic003G305200 Sobic003G305200 Sobic007G024700--Sobic003G305200 Sobic002G132000 Sobic002G132000 Sobic007G024700--Sobic002G132000 Sobic007G024700--Sobic002G419800 Sobic005G112300 Sobic005G112300 Sobic007G105100--Sobic005G112300 Sobic007G105100--Sobic001G289600 Sobic007G105100--Sobic003G408600 Sobic007G105100--Sobic010G010700 Sobic007G062800 Sobic007G062800 Sobic007G105100--Sobic007G062800 Sobic007G105100--Sobic005G008800 Sobic007G105100--Sobic001G540400 Sobic003G360400 Sobic003G360400 Sobic007G105100--Sobic003G360400 Sobic010G112100 Sobic010G112100 Sobic007G105100--Sobic010G112100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.