Gene annotation
Transcriptome id Sobic.004G264400.1
Synonym Sb04g030250
Functional annotation TBC domain containing protein, expressed
UniProt A0A097PKZ8 , C5Y086
Pfam PF00566 PF12068
Panther DB PTHR22957:SF34 PTHR22957
NCBI CDD KOG4567; GTPase-activating protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G52580 : RabGAP/TBC domain-containing protein
RAP-DB (Rice) LOC_Os02g48000.2 : TBC domain containing protein, expressed
MaizeGDB (Corn) Zm00025a032487
Brachypodium KQK00975 , KQK00974 , KQK00976
Barley HORVU6Hr1G069570.1 , HORVU6Hr1G069570.3 , HORVU6Hr1G069570.2 , HORVU6Hr1G069570.5 , HORVU6Hr1G069570.4 , HORVU6Hr1G069570.7 , HORVU6Hr1G069570.6
Wheat TraesCS6D02G256100 , TraesCS6D02G256100 , TraesCS6D02G256100 , TraesCS6B02G303300 , TraesCS6A02G276000 , TraesCS6B02G303300
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G264400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G109800 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
2 Sobic.009G113000 chaperone protein dnaJ 49, putative, expressed K09518: DnaJ homolog subfamily B member 12
3 Sobic.002G132000 serine/threonine-protein kinase AFC2, putative, expressed K08287: dual-specificity kinase
4 Sobic.007G024700 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
5 Sobic.004G331100 WD domain and HEAT domain containing protein, putative, expressed K08333: PIK3R4, phosphoinositide-3-kinase, regulatory subunit 4
6 Sobic.006G115600 expressed protein -
7 Sobic.001G065000 expressed protein -
8 Sobic.004G274200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
9 Sobic.007G075400 expressed protein -
10 Sobic.002G419800 structural constituent of ribosome, putative, expressed -
11 Sobic.003G118200 phosphoadenosine phosphosulfate, putative, expressed -
12 Sobic.009G027300 MYB family transcription factor, putative, expressed K04650: NCOR1, nuclear receptor co-repressor 1
13 Sobic.001G050200 expressed protein -
14 Sobic.001G114000 expressed protein -
15 Sobic.004G269200 protein kinase, putative, expressed K18670: dual specificity protein kinase YAK1
16 Sobic.004G347400 pumilio-family RNA binding protein, putative, expressed K17943: pumilio RNA-binding family
17 Sobic.004G146500 ataxin-2 related protein, putative, expressed -
18 Sobic.003G101400 transcriptional repressor, putative, expressed K11644: paired amphipathic helix protein Sin3a
19 Sobic.004G113400 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
20 Sobic.001G224600 peroxisome assembly protein 12, putative, expressed K13345: PEX12, peroxin-12


Gene co-expression network
sample Sobic004G264400 Sobic004G264400 Sobic001G109800 Sobic001G109800 Sobic004G264400--Sobic001G109800 Sobic009G113000 Sobic009G113000 Sobic004G264400--Sobic009G113000 Sobic002G132000 Sobic002G132000 Sobic004G264400--Sobic002G132000 Sobic007G024700 Sobic007G024700 Sobic004G264400--Sobic007G024700 Sobic004G331100 Sobic004G331100 Sobic004G264400--Sobic004G331100 Sobic006G115600 Sobic006G115600 Sobic004G264400--Sobic006G115600 Sobic001G065000 Sobic001G065000 Sobic004G264400--Sobic001G065000 Sobic004G274200 Sobic004G274200 Sobic004G264400--Sobic004G274200 Sobic007G075400 Sobic007G075400 Sobic004G264400--Sobic007G075400 Sobic004G146500 Sobic004G146500 Sobic001G109800--Sobic004G146500 Sobic001G109800--Sobic004G264400 Sobic002G297200 Sobic002G297200 Sobic001G109800--Sobic002G297200 Sobic007G119200 Sobic007G119200 Sobic001G109800--Sobic007G119200 Sobic009G166300 Sobic009G166300 Sobic001G109800--Sobic009G166300 Sobic001G409600 Sobic001G409600 Sobic001G109800--Sobic001G409600 Sobic002G071500 Sobic002G071500 Sobic001G109800--Sobic002G071500 Sobic001G220300 Sobic001G220300 Sobic001G109800--Sobic001G220300 Sobic009G026500 Sobic009G026500 Sobic001G109800--Sobic009G026500 Sobic003G118200 Sobic003G118200 Sobic009G113000--Sobic003G118200 Sobic009G113000--Sobic004G264400 Sobic009G053900 Sobic009G053900 Sobic009G113000--Sobic009G053900 Sobic009G113000--Sobic007G075400 Sobic004G347400 Sobic004G347400 Sobic009G113000--Sobic004G347400 Sobic001G121200 Sobic001G121200 Sobic009G113000--Sobic001G121200 Sobic009G113000--Sobic004G331100 Sobic004G200200 Sobic004G200200 Sobic009G113000--Sobic004G200200 Sobic001G146800 Sobic001G146800 Sobic009G113000--Sobic001G146800 Sobic004G006200 Sobic004G006200 Sobic002G132000--Sobic004G006200 Sobic002G132000--Sobic004G264400 Sobic002G132000--Sobic007G024700 Sobic004G295800 Sobic004G295800 Sobic002G132000--Sobic004G295800 Sobic002G132000--Sobic001G109800 Sobic001G290000 Sobic001G290000 Sobic002G132000--Sobic001G290000 Sobic002G132000--Sobic009G113000 Sobic003G305200 Sobic003G305200 Sobic002G132000--Sobic003G305200 Sobic001G137100 Sobic001G137100 Sobic002G132000--Sobic001G137100 Sobic002G270500 Sobic002G270500 Sobic007G024700--Sobic002G270500 Sobic009G094300 Sobic009G094300 Sobic007G024700--Sobic009G094300 Sobic009G249200 Sobic009G249200 Sobic007G024700--Sobic009G249200 Sobic004G052900 Sobic004G052900 Sobic007G024700--Sobic004G052900 Sobic001G270400 Sobic001G270400 Sobic007G024700--Sobic001G270400 Sobic007G024700--Sobic004G264400 Sobic007G024700--Sobic003G305200 Sobic007G024700--Sobic002G132000 Sobic002G419800 Sobic002G419800 Sobic007G024700--Sobic002G419800 Sobic004G331100--Sobic007G075400 Sobic009G027300 Sobic009G027300 Sobic004G331100--Sobic009G027300 Sobic004G331100--Sobic002G419800 Sobic003G101400 Sobic003G101400 Sobic004G331100--Sobic003G101400 Sobic001G290100 Sobic001G290100 Sobic004G331100--Sobic001G290100 Sobic001G050200 Sobic001G050200 Sobic004G331100--Sobic001G050200 Sobic004G331100--Sobic004G347400 Sobic004G331100--Sobic003G118200 Sobic004G065000 Sobic004G065000 Sobic004G331100--Sobic004G065000 Sobic006G115600--Sobic007G075400 Sobic002G045600 Sobic002G045600 Sobic006G115600--Sobic002G045600 Sobic006G115600--Sobic004G264400 Sobic006G115600--Sobic001G050200 Sobic010G139600 Sobic010G139600 Sobic006G115600--Sobic010G139600 Sobic006G115600--Sobic004G331100 Sobic007G163100 Sobic007G163100 Sobic006G115600--Sobic007G163100 Sobic006G115600--Sobic003G118200 Sobic010G278200 Sobic010G278200 Sobic006G115600--Sobic010G278200 Sobic001G114000 Sobic001G114000 Sobic001G065000--Sobic001G114000 Sobic001G281100 Sobic001G281100 Sobic001G065000--Sobic001G281100 Sobic006G012500 Sobic006G012500 Sobic001G065000--Sobic006G012500 Sobic001G534800 Sobic001G534800 Sobic001G065000--Sobic001G534800 Sobic005G118600 Sobic005G118600 Sobic001G065000--Sobic005G118600 Sobic008G099800 Sobic008G099800 Sobic001G065000--Sobic008G099800 Sobic003G093800 Sobic003G093800 Sobic001G065000--Sobic003G093800 Sobic006G037700 Sobic006G037700 Sobic001G065000--Sobic006G037700 Sobic003G229500 Sobic003G229500 Sobic001G065000--Sobic003G229500 Sobic008G047800 Sobic008G047800 Sobic004G274200--Sobic008G047800 Sobic010G236400 Sobic010G236400 Sobic004G274200--Sobic010G236400 Sobic004G274200--Sobic004G146500 Sobic004G021100 Sobic004G021100 Sobic004G274200--Sobic004G021100 Sobic008G112800 Sobic008G112800 Sobic004G274200--Sobic008G112800 Sobic003G352200 Sobic003G352200 Sobic004G274200--Sobic003G352200 Sobic009G044800 Sobic009G044800 Sobic004G274200--Sobic009G044800 Sobic004G274200--Sobic002G071500 Sobic004G274200--Sobic001G114000 Sobic007G075400--Sobic010G139600 Sobic007G075400--Sobic009G053900 Sobic007G075400--Sobic004G331100 Sobic002G008900 Sobic002G008900 Sobic007G075400--Sobic002G008900 Sobic009G191000 Sobic009G191000 Sobic007G075400--Sobic009G191000 Sobic002G146300 Sobic002G146300 Sobic007G075400--Sobic002G146300 Sobic003G422500 Sobic003G422500 Sobic007G075400--Sobic003G422500 Sobic003G313500 Sobic003G313500 Sobic007G075400--Sobic003G313500 Sobic007G075400--Sobic004G065000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.