Gene annotation
Transcriptome id Sobic.002G132000.1,Sobic.002G132000.3,Sobic.002G132000.7,Sobic.002G132000.6,Sobic.002G132000.5,Sobic.002G132000.2,Sobic.002G132000.4
Synonym Sb02g011360, AME1, FC2, AFC2
Functional annotation serine/threonine-protein kinase AFC2, putative, expressed
UniProt A0A1B6QAZ5 , A0A1B6QAZ9 , A0A1B6QAZ4
Pfam PF07714
Panther DB PTHR24058 PTHR24058:SF44 PTHR24058 PTHR24058:SF58
NCBI CDD KOG0671; LAMMER dual specificity kinases
KEGG Orthology K08287; dual-specificity kinase
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT3G53570 : FUS3-complementing gene 2,FUS3-complementing gene 1
RAP-DB (Rice) LOC_Os12g27520.1 : serine/threonine-protein kinase AFC2, putative, expressed
MaizeGDB (Corn) Zm00025a026942 , Zm00025a013508
Brachypodium KQK00168 , KQJ91559
Barley HORVU5Hr1G091970.9 , HORVU5Hr1G091970.8 , HORVU5Hr1G091970.1 , HORVU5Hr1G091970.3 , HORVU5Hr1G091970.2 , HORVU5Hr1G091970.5 , HORVU5Hr1G091970.4 , HORVU5Hr1G091970.7 , HORVU5Hr1G091970.6 , HORVU5Hr1G091970.23 , HORVU5Hr1G091970.28 , HORVU5Hr1G091970.20 , HORVU5Hr1G091970.21 , HORVU5Hr1G091970.22 , HORVU5Hr1G091970.24 , HORVU5Hr1G091970.25 , HORVU5Hr1G091970.26 , HORVU5Hr1G091970.27 , HORVU5Hr1G091970.19 , HORVU5Hr1G091970.18 , HORVU5Hr1G091970.15 , HORVU5Hr1G091970.14 , HORVU5Hr1G091970.17 , HORVU5Hr1G091970.16 , HORVU5Hr1G091970.11 , HORVU5Hr1G091970.10 , HORVU5Hr1G091970.13 , HORVU5Hr1G091970.12
Wheat TraesCS5B02G371800 , TraesCS5B02G371800 , TraesCS5A02G369500 , TraesCS5A02G369500 , TraesCS5D02G378900 , TraesCS5D02G378900
Populus PNT10247 , PNT01138 , PNT01137 , PNT10248 , PNT10246


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cDNA sequences
Sobic.002G132000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G006200 ferrochelatase-2, chloroplast precursor, putative, expressed K01772: hemH, protoporphyrin/coproporphyrin ferrochelatase
2 Sobic.004G264400 TBC domain containing protein, expressed -
3 Sobic.007G024700 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
4 Sobic.004G295800 chaperone protein dnaJ, putative, expressed K09503: DnaJ homolog subfamily A member 2
5 Sobic.001G109800 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
6 Sobic.001G290000 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05605: 3-hydroxyisobutyryl-CoA hydrolase
7 Sobic.009G113000 chaperone protein dnaJ 49, putative, expressed K09518: DnaJ homolog subfamily B member 12
8 Sobic.003G305200 glycerophosphoryl diester phosphodiesterase family protein, putative, expressed K01126: E3.1.4.46, glpQ, glycerophosphoryl diester phosphodiesterase
9 Sobic.001G137100 homeodomain protein, putative, expressed -
10 Sobic.003G408500 beclin-1, putative, expressed K08334: BECN, VPS30, beclin
11 Sobic.004G331100 WD domain and HEAT domain containing protein, putative, expressed K08333: PIK3R4, phosphoinositide-3-kinase, regulatory subunit 4
12 Sobic.002G419800 structural constituent of ribosome, putative, expressed -
13 Sobic.001G224600 peroxisome assembly protein 12, putative, expressed K13345: PEX12, peroxin-12
14 Sobic.008G191100 nodulin, putative, expressed -
15 Sobic.009G249200 transmembrane protein, putative, expressed -
16 Sobic.006G115600 expressed protein -
17 Sobic.004G052900 biotin--protein ligase, putative, expressed K01942: biotin---protein ligase
18 Sobic.001G114000 expressed protein -
19 Sobic.003G118200 phosphoadenosine phosphosulfate, putative, expressed -
20 Sobic.003G248200 NLI interacting factor-like phosphatase, putative, expressed -


Gene co-expression network
sample Sobic002G132000 Sobic002G132000 Sobic004G006200 Sobic004G006200 Sobic002G132000--Sobic004G006200 Sobic004G264400 Sobic004G264400 Sobic002G132000--Sobic004G264400 Sobic007G024700 Sobic007G024700 Sobic002G132000--Sobic007G024700 Sobic004G295800 Sobic004G295800 Sobic002G132000--Sobic004G295800 Sobic001G109800 Sobic001G109800 Sobic002G132000--Sobic001G109800 Sobic001G290000 Sobic001G290000 Sobic002G132000--Sobic001G290000 Sobic009G113000 Sobic009G113000 Sobic002G132000--Sobic009G113000 Sobic003G305200 Sobic003G305200 Sobic002G132000--Sobic003G305200 Sobic001G137100 Sobic001G137100 Sobic002G132000--Sobic001G137100 Sobic004G006200--Sobic002G132000 Sobic004G006200--Sobic004G295800 Sobic004G006200--Sobic007G024700 Sobic007G062600 Sobic007G062600 Sobic004G006200--Sobic007G062600 Sobic004G052900 Sobic004G052900 Sobic004G006200--Sobic004G052900 Sobic004G006200--Sobic004G264400 Sobic002G424000 Sobic002G424000 Sobic004G006200--Sobic002G424000 Sobic001G199100 Sobic001G199100 Sobic004G006200--Sobic001G199100 Sobic003G012200 Sobic003G012200 Sobic004G006200--Sobic003G012200 Sobic004G264400--Sobic001G109800 Sobic004G264400--Sobic009G113000 Sobic004G264400--Sobic002G132000 Sobic004G264400--Sobic007G024700 Sobic004G331100 Sobic004G331100 Sobic004G264400--Sobic004G331100 Sobic006G115600 Sobic006G115600 Sobic004G264400--Sobic006G115600 Sobic001G065000 Sobic001G065000 Sobic004G264400--Sobic001G065000 Sobic004G274200 Sobic004G274200 Sobic004G264400--Sobic004G274200 Sobic007G075400 Sobic007G075400 Sobic004G264400--Sobic007G075400 Sobic002G270500 Sobic002G270500 Sobic007G024700--Sobic002G270500 Sobic009G094300 Sobic009G094300 Sobic007G024700--Sobic009G094300 Sobic009G249200 Sobic009G249200 Sobic007G024700--Sobic009G249200 Sobic007G024700--Sobic004G052900 Sobic001G270400 Sobic001G270400 Sobic007G024700--Sobic001G270400 Sobic007G024700--Sobic004G264400 Sobic007G024700--Sobic003G305200 Sobic007G024700--Sobic002G132000 Sobic002G419800 Sobic002G419800 Sobic007G024700--Sobic002G419800 Sobic008G191100 Sobic008G191100 Sobic004G295800--Sobic008G191100 Sobic004G295800--Sobic002G132000 Sobic004G295800--Sobic007G024700 Sobic009G121100 Sobic009G121100 Sobic004G295800--Sobic009G121100 Sobic004G295800--Sobic004G006200 Sobic004G021100 Sobic004G021100 Sobic004G295800--Sobic004G021100 Sobic001G373200 Sobic001G373200 Sobic004G295800--Sobic001G373200 Sobic003G407300 Sobic003G407300 Sobic004G295800--Sobic003G407300 Sobic004G295800--Sobic001G290000 Sobic004G146500 Sobic004G146500 Sobic001G109800--Sobic004G146500 Sobic001G109800--Sobic004G264400 Sobic002G297200 Sobic002G297200 Sobic001G109800--Sobic002G297200 Sobic007G119200 Sobic007G119200 Sobic001G109800--Sobic007G119200 Sobic009G166300 Sobic009G166300 Sobic001G109800--Sobic009G166300 Sobic001G409600 Sobic001G409600 Sobic001G109800--Sobic001G409600 Sobic002G071500 Sobic002G071500 Sobic001G109800--Sobic002G071500 Sobic001G220300 Sobic001G220300 Sobic001G109800--Sobic001G220300 Sobic009G026500 Sobic009G026500 Sobic001G109800--Sobic009G026500 Sobic001G224600 Sobic001G224600 Sobic001G290000--Sobic001G224600 Sobic001G290000--Sobic007G024700 Sobic001G290000--Sobic002G132000 Sobic001G290000--Sobic004G295800 Sobic001G290000--Sobic008G191100 Sobic001G290000--Sobic004G264400 Sobic001G290000--Sobic002G419800 Sobic001G290000--Sobic001G137100 Sobic001G290000--Sobic009G249200 Sobic003G118200 Sobic003G118200 Sobic009G113000--Sobic003G118200 Sobic009G113000--Sobic004G264400 Sobic009G053900 Sobic009G053900 Sobic009G113000--Sobic009G053900 Sobic009G113000--Sobic007G075400 Sobic004G347400 Sobic004G347400 Sobic009G113000--Sobic004G347400 Sobic001G121200 Sobic001G121200 Sobic009G113000--Sobic001G121200 Sobic009G113000--Sobic004G331100 Sobic004G200200 Sobic004G200200 Sobic009G113000--Sobic004G200200 Sobic001G146800 Sobic001G146800 Sobic009G113000--Sobic001G146800 Sobic003G305200--Sobic007G024700 Sobic010G130200 Sobic010G130200 Sobic003G305200--Sobic010G130200 Sobic001G427100 Sobic001G427100 Sobic003G305200--Sobic001G427100 Sobic006G083600 Sobic006G083600 Sobic003G305200--Sobic006G083600 Sobic003G305200--Sobic002G132000 Sobic003G305200--Sobic004G295800 Sobic003G305200--Sobic009G094300 Sobic003G305200--Sobic002G270500 Sobic003G329400 Sobic003G329400 Sobic003G305200--Sobic003G329400 Sobic001G390800 Sobic001G390800 Sobic001G137100--Sobic001G390800 Sobic001G137100--Sobic007G024700 Sobic010G228400 Sobic010G228400 Sobic001G137100--Sobic010G228400 Sobic001G137100--Sobic002G132000 Sobic001G137100--Sobic001G270400 Sobic002G130800 Sobic002G130800 Sobic001G137100--Sobic002G130800 Sobic001G137100--Sobic009G094300 Sobic002G111000 Sobic002G111000 Sobic001G137100--Sobic002G111000 Sobic002G427050 Sobic002G427050 Sobic001G137100--Sobic002G427050
Octagon: transcription factors


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