Gene annotation
Transcriptome id Sobic.004G052900.1
Synonym HCS1, Sb04g004480
Functional annotation biotin--protein ligase, putative, expressed
UniProt C5XVI4
Pfam PF02237 PF03099
Panther DB PTHR12835
NCBI CDD -
KEGG Orthology K01942; biotin---protein ligase
Gene Ontology GO:0006464; cellular protein modification process GO:0004077biotin-[acetyl-CoA-carboxylase] ligase activity


Orthologs (automatic annotation)
TAIR AT2G25710 : holocarboxylase synthase 1
RAP-DB (Rice) LOC_Os02g07040.2 : biotin--protein ligase, putative, expressed
MaizeGDB (Corn) Zm00025a019051
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G109100 decarboxylase, putative, expressed K01634: SGPL1, sphinganine-1-phosphate aldolase
2 Sobic.007G024700 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
3 Sobic.003G100800 acetyl-CoA acetyltransferase, cytosolic, putative, expressed K00626: ACAT, acetyl-CoA C-acetyltransferase
4 Sobic.007G172400 AAA-type ATPase family protein, putative, expressed K13338: peroxin-1
5 Sobic.002G340100 GTPase-activating protein, putative, expressed K12486: stromal membrane-associated protein
6 Sobic.002G419800 structural constituent of ribosome, putative, expressed -
7 Sobic.006G245400 -(PubMedID : 34525227)@NADPH reductase, putative, expressed K00327: NADPH-ferrihemoprotein reductase
8 Sobic.001G248300 OsPOP21 - Putative Prolyl Oligopeptidase homologue, expressed K01303: acylaminoacyl-peptidase
9 Sobic.009G094300 emp24/gp25L/p24 family protein, putative, expressed -
10 Sobic.009G249200 transmembrane protein, putative, expressed -
11 Sobic.004G006200 ferrochelatase-2, chloroplast precursor, putative, expressed K01772: hemH, protoporphyrin/coproporphyrin ferrochelatase
12 Sobic.004G347400 pumilio-family RNA binding protein, putative, expressed K17943: pumilio RNA-binding family
13 Sobic.001G178700 NBS-LRR disease resistance protein, putative, expressed -
14 Sobic.008G070500 GTP binding protein, putative, expressed -
15 Sobic.004G355000 SAC9, putative, expressed -
16 Sobic.004G264400 TBC domain containing protein, expressed -
17 Sobic.004G339100 endoribonuclease, putative, expressed K06927: diphthine-ammonia ligase
18 Sobic.010G205800 palmitoyltransferase TIP1, putative, expressed K18932: palmitoyltransferase
19 Sobic.002G179900 ABC transporter, ATP-binding protein, putative, expressed -
20 Sobic.001G292200 dynamin family protein, putative, expressed -


Gene co-expression network
sample Sobic004G052900 Sobic004G052900 Sobic003G109100 Sobic003G109100 Sobic004G052900--Sobic003G109100 Sobic007G024700 Sobic007G024700 Sobic004G052900--Sobic007G024700 Sobic003G100800 Sobic003G100800 Sobic004G052900--Sobic003G100800 Sobic007G172400 Sobic007G172400 Sobic004G052900--Sobic007G172400 Sobic002G340100 Sobic002G340100 Sobic004G052900--Sobic002G340100 Sobic002G419800 Sobic002G419800 Sobic004G052900--Sobic002G419800 Sobic006G245400 Sobic006G245400 Sobic004G052900--Sobic006G245400 Sobic001G248300 Sobic001G248300 Sobic004G052900--Sobic001G248300 Sobic009G094300 Sobic009G094300 Sobic004G052900--Sobic009G094300 Sobic003G109100--Sobic004G052900 Sobic003G109100--Sobic007G024700 Sobic001G270400 Sobic001G270400 Sobic003G109100--Sobic001G270400 Sobic003G109100--Sobic003G100800 Sobic003G109100--Sobic009G094300 Sobic003G109100--Sobic006G245400 Sobic001G137100 Sobic001G137100 Sobic003G109100--Sobic001G137100 Sobic003G109100--Sobic002G340100 Sobic010G205800 Sobic010G205800 Sobic003G109100--Sobic010G205800 Sobic002G270500 Sobic002G270500 Sobic007G024700--Sobic002G270500 Sobic007G024700--Sobic009G094300 Sobic009G249200 Sobic009G249200 Sobic007G024700--Sobic009G249200 Sobic007G024700--Sobic004G052900 Sobic007G024700--Sobic001G270400 Sobic004G264400 Sobic004G264400 Sobic007G024700--Sobic004G264400 Sobic003G305200 Sobic003G305200 Sobic007G024700--Sobic003G305200 Sobic002G132000 Sobic002G132000 Sobic007G024700--Sobic002G132000 Sobic007G024700--Sobic002G419800 Sobic003G100800--Sobic004G052900 Sobic003G100800--Sobic007G172400 Sobic003G100800--Sobic003G109100 Sobic003G100800--Sobic007G024700 Sobic004G329400 Sobic004G329400 Sobic003G100800--Sobic004G329400 Sobic003G100800--Sobic001G248300 Sobic001G178700 Sobic001G178700 Sobic003G100800--Sobic001G178700 Sobic010G251200 Sobic010G251200 Sobic003G100800--Sobic010G251200 Sobic004G113400 Sobic004G113400 Sobic003G100800--Sobic004G113400 Sobic001G058700 Sobic001G058700 Sobic007G172400--Sobic001G058700 Sobic002G071500 Sobic002G071500 Sobic007G172400--Sobic002G071500 Sobic001G050600 Sobic001G050600 Sobic007G172400--Sobic001G050600 Sobic004G347400 Sobic004G347400 Sobic007G172400--Sobic004G347400 Sobic007G172400--Sobic002G419800 Sobic001G219900 Sobic001G219900 Sobic007G172400--Sobic001G219900 Sobic007G172400--Sobic004G113400 Sobic001G474600 Sobic001G474600 Sobic007G172400--Sobic001G474600 Sobic003G408600 Sobic003G408600 Sobic007G172400--Sobic003G408600 Sobic001G292200 Sobic001G292200 Sobic002G340100--Sobic001G292200 Sobic001G071400 Sobic001G071400 Sobic002G340100--Sobic001G071400 Sobic002G340100--Sobic006G245400 Sobic002G315200 Sobic002G315200 Sobic002G340100--Sobic002G315200 Sobic009G135800 Sobic009G135800 Sobic002G340100--Sobic009G135800 Sobic001G114000 Sobic001G114000 Sobic002G340100--Sobic001G114000 Sobic007G217000 Sobic007G217000 Sobic002G340100--Sobic007G217000 Sobic002G340100--Sobic004G052900 Sobic002G340100--Sobic001G474600 Sobic004G331100 Sobic004G331100 Sobic002G419800--Sobic004G331100 Sobic001G050200 Sobic001G050200 Sobic002G419800--Sobic001G050200 Sobic009G027300 Sobic009G027300 Sobic002G419800--Sobic009G027300 Sobic007G075400 Sobic007G075400 Sobic002G419800--Sobic007G075400 Sobic001G290100 Sobic001G290100 Sobic002G419800--Sobic001G290100 Sobic002G419800--Sobic007G172400 Sobic001G289600 Sobic001G289600 Sobic002G419800--Sobic001G289600 Sobic002G419800--Sobic007G024700 Sobic007G105100 Sobic007G105100 Sobic002G419800--Sobic007G105100 Sobic006G245400--Sobic002G340100 Sobic006G245400--Sobic007G172400 Sobic006G245400--Sobic004G052900 Sobic006G245400--Sobic004G113400 Sobic006G245400--Sobic001G114000 Sobic006G237400 Sobic006G237400 Sobic006G245400--Sobic006G237400 Sobic006G245400--Sobic007G217000 Sobic001G065000 Sobic001G065000 Sobic006G245400--Sobic001G065000 Sobic006G245400--Sobic001G474600 Sobic004G355000 Sobic004G355000 Sobic001G248300--Sobic004G355000 Sobic002G169900 Sobic002G169900 Sobic001G248300--Sobic002G169900 Sobic001G248300--Sobic001G178700 Sobic001G248300--Sobic004G052900 Sobic005G001000 Sobic005G001000 Sobic001G248300--Sobic005G001000 Sobic001G248300--Sobic009G094300 Sobic010G112000 Sobic010G112000 Sobic001G248300--Sobic010G112000 Sobic001G248300--Sobic004G329400 Sobic001G248300--Sobic004G113400 Sobic009G094300--Sobic007G024700 Sobic009G094300--Sobic004G113400 Sobic009G094300--Sobic002G270500 Sobic009G094300--Sobic004G329400 Sobic005G157000 Sobic005G157000 Sobic009G094300--Sobic005G157000 Sobic009G094300--Sobic004G052900 Sobic009G094300--Sobic001G270400 Sobic009G094300--Sobic001G248300 Sobic001G207400 Sobic001G207400 Sobic009G094300--Sobic001G207400
Octagon: transcription factors


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