Gene annotation
Transcriptome id Sobic.010G205800.1
Synonym Sb10g025310, TIP1
Functional annotation palmitoyltransferase TIP1, putative, expressed
UniProt C5Z6Q1
Pfam PF13637 PF01529 PF12796
Panther DB PTHR24161 PTHR24161:SF22
NCBI CDD KOG0509; Ankyrin repeat and DHHC-type Zn-finger domain containing proteins
KEGG Orthology K18932; palmitoyltransferase
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT5G20350 : Ankyrin repeat family protein with DHHC zinc finger domain
RAP-DB (Rice) LOC_Os06g43680.1 : palmitoyltransferase TIP1, putative, expressed
MaizeGDB (Corn) Zm00025a051391 , Zm00025a042067 , Zm00025a019291 , Zm00025a015732
Brachypodium KQK16781 , KQK16783 , KQK16782 , KQJ93703 , KQJ93702 , KQJ93704 , KQJ88236
Barley HORVU6Hr1G044040.1 , HORVU6Hr1G044040.2 , HORVU6Hr1G044040.3 , HORVU6Hr1G044040.4 , HORVU7Hr1G115550.6 , HORVU7Hr1G115550.4 , HORVU7Hr1G115550.5 , HORVU7Hr1G115550.2 , HORVU7Hr1G115550.3 , HORVU7Hr1G115550.1 , HORVU0Hr1G015770.6 , HORVU0Hr1G015770.7 , HORVU0Hr1G015770.4 , HORVU0Hr1G015770.5 , HORVU0Hr1G015770.2 , HORVU0Hr1G015770.3 , HORVU0Hr1G015770.1 , HORVU0Hr1G015770.8 , HORVU0Hr1G015770.10 , HORVU0Hr1G015770.12 , HORVU0Hr1G015770.13
Wheat TraesCS6D02G133900 , TraesCS6D02G133900 , TraesCS6B02G173100 , TraesCS6B02G173100 , TraesCS7D02G507500 , TraesCS7D02G507500 , TraesCS6A02G144900 , TraesCS6A02G144900 , TraesCS7A02G517600 , TraesCS7B02G433700 , TraesCS7B02G433700 , TraesCS6B02G173100
Populus -


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cDNA sequences
Sobic.010G205800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G121200 zinc finger, C3HC4 type domain containing protein, expressed -
2 Sobic.001G390800 transcription factor HBP-1b, putative, expressed K14431: transcription factor TGA
3 Sobic.001G124200 ethylene receptor, putative, expressed K14509: ETR, ethylene receptor
4 Sobic.001G007000 -(PubMedID : 26976818)@4-nitrophenylphosphatase, putative, expressed K19269: PGP, phosphoglycolate phosphatase
5 Sobic.001G000200 TBC domain containing protein, expressed -
6 Sobic.002G262900 farnesyltransferase/geranylgeranyltransferase type-1 subunitalpha, putative, expressed K05955: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha
7 Sobic.004G274200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
8 Sobic.006G199200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
9 Sobic.001G079200 STE_MEKK_ste11_MAP3K.15 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
10 Sobic.009G249200 transmembrane protein, putative, expressed -
11 Sobic.001G114000 expressed protein -
12 Sobic.008G004600 ubiquitin-activating enzyme, putative, expressed K03178: UBE1, ubiquitin-activating enzyme E1
13 Sobic.003G155900 mov34/MPN/PAD-1 family protein, expressed K11866: STAMBP, STAM-binding protein
14 Sobic.010G020300 spastin, putative, expressed K13254: spastin
15 Sobic.006G012500 protein transport protein Sec24-like, putative, expressed K14007: protein transport protein SEC24
16 Sobic.004G113400 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
17 Sobic.004G347400 pumilio-family RNA binding protein, putative, expressed K17943: pumilio RNA-binding family
18 Sobic.006G237400 cyclic nucleotide-gated ion channel, putative, expressed K05391: cyclic nucleotide gated channel, plant
19 Sobic.006G126100 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
20 Sobic.001G207000 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2


Gene co-expression network
sample Sobic010G205800 Sobic010G205800 Sobic001G121200 Sobic001G121200 Sobic010G205800--Sobic001G121200 Sobic001G390800 Sobic001G390800 Sobic010G205800--Sobic001G390800 Sobic001G124200 Sobic001G124200 Sobic010G205800--Sobic001G124200 Sobic001G007000 Sobic001G007000 Sobic010G205800--Sobic001G007000 Sobic001G000200 Sobic001G000200 Sobic010G205800--Sobic001G000200 Sobic002G262900 Sobic002G262900 Sobic010G205800--Sobic002G262900 Sobic004G274200 Sobic004G274200 Sobic010G205800--Sobic004G274200 Sobic006G199200 Sobic006G199200 Sobic010G205800--Sobic006G199200 Sobic001G079200 Sobic001G079200 Sobic010G205800--Sobic001G079200 Sobic001G121200--Sobic001G390800 Sobic001G121200--Sobic010G205800 Sobic001G268200 Sobic001G268200 Sobic001G121200--Sobic001G268200 Sobic009G113000 Sobic009G113000 Sobic001G121200--Sobic009G113000 Sobic002G111000 Sobic002G111000 Sobic001G121200--Sobic002G111000 Sobic010G147100 Sobic010G147100 Sobic001G121200--Sobic010G147100 Sobic001G207000 Sobic001G207000 Sobic001G121200--Sobic001G207000 Sobic001G146800 Sobic001G146800 Sobic001G121200--Sobic001G146800 Sobic009G056200 Sobic009G056200 Sobic001G121200--Sobic009G056200 Sobic001G390800--Sobic001G268200 Sobic001G390800--Sobic001G121200 Sobic003G313500 Sobic003G313500 Sobic001G390800--Sobic003G313500 Sobic001G390800--Sobic010G205800 Sobic001G085300 Sobic001G085300 Sobic001G390800--Sobic001G085300 Sobic001G390800--Sobic010G147100 Sobic007G075400 Sobic007G075400 Sobic001G390800--Sobic007G075400 Sobic010G139600 Sobic010G139600 Sobic001G390800--Sobic010G139600 Sobic001G050200 Sobic001G050200 Sobic001G390800--Sobic001G050200 Sobic001G124200--Sobic010G205800 Sobic010G020300 Sobic010G020300 Sobic001G124200--Sobic010G020300 Sobic003G155900 Sobic003G155900 Sobic001G124200--Sobic003G155900 Sobic004G039600 Sobic004G039600 Sobic001G124200--Sobic004G039600 Sobic010G278200 Sobic010G278200 Sobic001G124200--Sobic010G278200 Sobic007G132100 Sobic007G132100 Sobic001G124200--Sobic007G132100 Sobic009G138100 Sobic009G138100 Sobic001G124200--Sobic009G138100 Sobic001G124200--Sobic001G390800 Sobic009G228700 Sobic009G228700 Sobic001G124200--Sobic009G228700 Sobic009G068500 Sobic009G068500 Sobic001G007000--Sobic009G068500 Sobic010G251000 Sobic010G251000 Sobic001G007000--Sobic010G251000 Sobic001G392300 Sobic001G392300 Sobic001G007000--Sobic001G392300 Sobic002G359400 Sobic002G359400 Sobic001G007000--Sobic002G359400 Sobic004G353200 Sobic004G353200 Sobic001G007000--Sobic004G353200 Sobic001G007000--Sobic010G205800 Sobic008G046500 Sobic008G046500 Sobic001G007000--Sobic008G046500 Sobic001G080700 Sobic001G080700 Sobic001G007000--Sobic001G080700 Sobic001G031100 Sobic001G031100 Sobic001G007000--Sobic001G031100 Sobic009G199200 Sobic009G199200 Sobic001G000200--Sobic009G199200 Sobic001G000200--Sobic010G205800 Sobic006G237400 Sobic006G237400 Sobic001G000200--Sobic006G237400 Sobic001G253700 Sobic001G253700 Sobic001G000200--Sobic001G253700 Sobic008G004600 Sobic008G004600 Sobic001G000200--Sobic008G004600 Sobic003G233600 Sobic003G233600 Sobic001G000200--Sobic003G233600 Sobic001G291000 Sobic001G291000 Sobic001G000200--Sobic001G291000 Sobic001G000200--Sobic001G079200 Sobic001G071400 Sobic001G071400 Sobic001G000200--Sobic001G071400 Sobic002G008800 Sobic002G008800 Sobic002G262900--Sobic002G008800 Sobic004G275700 Sobic004G275700 Sobic002G262900--Sobic004G275700 Sobic010G164000 Sobic010G164000 Sobic002G262900--Sobic010G164000 Sobic006G136400 Sobic006G136400 Sobic002G262900--Sobic006G136400 Sobic002G262900--Sobic004G039600 Sobic002G262900--Sobic010G205800 Sobic010G261600 Sobic010G261600 Sobic002G262900--Sobic010G261600 Sobic002G262900--Sobic003G155900 Sobic002G262900--Sobic001G124200 Sobic008G047800 Sobic008G047800 Sobic004G274200--Sobic008G047800 Sobic010G236400 Sobic010G236400 Sobic004G274200--Sobic010G236400 Sobic004G146500 Sobic004G146500 Sobic004G274200--Sobic004G146500 Sobic004G021100 Sobic004G021100 Sobic004G274200--Sobic004G021100 Sobic008G112800 Sobic008G112800 Sobic004G274200--Sobic008G112800 Sobic003G352200 Sobic003G352200 Sobic004G274200--Sobic003G352200 Sobic009G044800 Sobic009G044800 Sobic004G274200--Sobic009G044800 Sobic002G071500 Sobic002G071500 Sobic004G274200--Sobic002G071500 Sobic001G114000 Sobic001G114000 Sobic004G274200--Sobic001G114000 Sobic003G195000 Sobic003G195000 Sobic006G199200--Sobic003G195000 Sobic006G199200--Sobic010G205800 Sobic001G493200 Sobic001G493200 Sobic006G199200--Sobic001G493200 Sobic001G241100 Sobic001G241100 Sobic006G199200--Sobic001G241100 Sobic005G027400 Sobic005G027400 Sobic006G199200--Sobic005G027400 Sobic010G079900 Sobic010G079900 Sobic006G199200--Sobic010G079900 Sobic006G199200--Sobic001G121200 Sobic006G160300 Sobic006G160300 Sobic006G199200--Sobic006G160300 Sobic001G289800 Sobic001G289800 Sobic006G199200--Sobic001G289800 Sobic001G079200--Sobic001G390800 Sobic001G079200--Sobic010G205800 Sobic001G079200--Sobic003G233600 Sobic001G079200--Sobic001G241100 Sobic006G126100 Sobic006G126100 Sobic001G079200--Sobic006G126100 Sobic001G079200--Sobic001G007000 Sobic003G273600 Sobic003G273600 Sobic001G079200--Sobic003G273600 Sobic003G169600 Sobic003G169600 Sobic001G079200--Sobic003G169600 Sobic001G079200--Sobic001G000200
Octagon: transcription factors


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