Gene annotation
Transcriptome id Sobic.001G000200.1
Synonym Sb01g000210
Functional annotation TBC domain containing protein, expressed
UniProt C5WR13
Pfam PF00566
Panther DB PTHR22957 PTHR22957:SF273
NCBI CDD KOG2197; Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G27100 : Ypt/Rab-GAP domain of gyp1p superfamily protein
RAP-DB (Rice) LOC_Os11g37690.1 : TBC domain containing protein, expressed
MaizeGDB (Corn) Zm00025a014821 , Zm00025a009172
Brachypodium PNT69409 , KQK11909 , KQK11910 , PNT69751
Barley HORVU2Hr1G045440.5 , HORVU2Hr1G045440.4 , HORVU2Hr1G045440.2 , HORVU2Hr1G045440.1 , HORVU5Hr1G124670.11 , HORVU5Hr1G124670.10 , HORVU5Hr1G124670.12 , HORVU5Hr1G124670.15 , HORVU5Hr1G124670.14 , HORVU5Hr1G124670.17 , HORVU5Hr1G124670.16 , HORVU5Hr1G124670.19 , HORVU5Hr1G124670.18 , HORVU5Hr1G124670.5 , HORVU5Hr1G124670.4 , HORVU5Hr1G124670.7 , HORVU5Hr1G124670.6 , HORVU5Hr1G124670.1 , HORVU5Hr1G124670.3 , HORVU5Hr1G124670.2 , HORVU5Hr1G124670.9 , HORVU5Hr1G124670.8
Wheat TraesCS7B02G000100 , TraesCS7B02G000100 , TraesCS2A02G219400 , TraesCS5D02G564100 , TraesCS5D02G564100 , TraesCS5D02G564100 , TraesCS5B02G572700 , TraesCS5B02G572700 , TraesCS2D02G225300 , TraesCS2D02G225300 , TraesCS2B02G245000
Populus -


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cDNA sequences
Sobic.001G000200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G199200 gamma-glutamyl hydrolase precursor, putative, expressed K01307: gamma-glutamyl hydrolase
2 Sobic.010G205800 palmitoyltransferase TIP1, putative, expressed K18932: palmitoyltransferase
3 Sobic.006G237400 cyclic nucleotide-gated ion channel, putative, expressed K05391: cyclic nucleotide gated channel, plant
4 Sobic.001G253700 protein kinase domain containing protein, expressed K04733: interleukin-1 receptor-associated kinase 4
5 Sobic.008G004600 ubiquitin-activating enzyme, putative, expressed K03178: UBE1, ubiquitin-activating enzyme E1
6 Sobic.003G233600 aspartyl aminopeptidase, putative, expressed K01267: aspartyl aminopeptidase
7 Sobic.001G291000 disease resistance protein RPM1, putative, expressed K13457: RPM1, disease resistance protein RPM1
8 Sobic.001G079200 STE_MEKK_ste11_MAP3K.15 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
9 Sobic.001G071400 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
10 Sobic.004G113400 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
11 Sobic.003G001100 Lg106, putative, expressed -
12 Sobic.009G249200 transmembrane protein, putative, expressed -
13 Sobic.001G390800 transcription factor HBP-1b, putative, expressed K14431: transcription factor TGA
14 Sobic.005G106500 oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed K11165: dehydrogenase/reductase SDR family member 7
15 Sobic.009G047200 protein kinase domain containing protein, expressed -
16 Sobic.009G094300 emp24/gp25L/p24 family protein, putative, expressed -
17 Sobic.004G358600 cation efflux family protein, putative, expressed K14692: SLC30A5_7, ZNT5_7, MTP, solute carrier family 30 (zinc transporter), member 5/7
18 Sobic.009G259400 pleckstrin homology domain-containing protein-related taxo, putative, expressed -
19 Sobic.004G052900 biotin--protein ligase, putative, expressed K01942: biotin---protein ligase
20 Sobic.004G274200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14


Gene co-expression network
sample Sobic001G000200 Sobic001G000200 Sobic009G199200 Sobic009G199200 Sobic001G000200--Sobic009G199200 Sobic010G205800 Sobic010G205800 Sobic001G000200--Sobic010G205800 Sobic006G237400 Sobic006G237400 Sobic001G000200--Sobic006G237400 Sobic001G253700 Sobic001G253700 Sobic001G000200--Sobic001G253700 Sobic008G004600 Sobic008G004600 Sobic001G000200--Sobic008G004600 Sobic003G233600 Sobic003G233600 Sobic001G000200--Sobic003G233600 Sobic001G291000 Sobic001G291000 Sobic001G000200--Sobic001G291000 Sobic001G079200 Sobic001G079200 Sobic001G000200--Sobic001G079200 Sobic001G071400 Sobic001G071400 Sobic001G000200--Sobic001G071400 Sobic009G199200--Sobic001G000200 Sobic009G199200--Sobic003G233600 Sobic009G199200--Sobic008G004600 Sobic002G317300 Sobic002G317300 Sobic009G199200--Sobic002G317300 Sobic009G199200--Sobic010G205800 Sobic001G186800 Sobic001G186800 Sobic009G199200--Sobic001G186800 Sobic001G281600 Sobic001G281600 Sobic009G199200--Sobic001G281600 Sobic002G166300 Sobic002G166300 Sobic009G199200--Sobic002G166300 Sobic002G260900 Sobic002G260900 Sobic009G199200--Sobic002G260900 Sobic001G121200 Sobic001G121200 Sobic010G205800--Sobic001G121200 Sobic001G390800 Sobic001G390800 Sobic010G205800--Sobic001G390800 Sobic001G124200 Sobic001G124200 Sobic010G205800--Sobic001G124200 Sobic001G007000 Sobic001G007000 Sobic010G205800--Sobic001G007000 Sobic010G205800--Sobic001G000200 Sobic002G262900 Sobic002G262900 Sobic010G205800--Sobic002G262900 Sobic004G274200 Sobic004G274200 Sobic010G205800--Sobic004G274200 Sobic006G199200 Sobic006G199200 Sobic010G205800--Sobic006G199200 Sobic010G205800--Sobic001G079200 Sobic001G497300 Sobic001G497300 Sobic006G237400--Sobic001G497300 Sobic008G047800 Sobic008G047800 Sobic006G237400--Sobic008G047800 Sobic003G029700 Sobic003G029700 Sobic006G237400--Sobic003G029700 Sobic009G249200 Sobic009G249200 Sobic006G237400--Sobic009G249200 Sobic007G217000 Sobic007G217000 Sobic006G237400--Sobic007G217000 Sobic006G237400--Sobic001G253700 Sobic002G310200 Sobic002G310200 Sobic006G237400--Sobic002G310200 Sobic001G474600 Sobic001G474600 Sobic006G237400--Sobic001G474600 Sobic001G220300 Sobic001G220300 Sobic006G237400--Sobic001G220300 Sobic001G253700--Sobic006G237400 Sobic001G253700--Sobic001G000200 Sobic006G273200 Sobic006G273200 Sobic001G253700--Sobic006G273200 Sobic003G176600 Sobic003G176600 Sobic001G253700--Sobic003G176600 Sobic003G001000 Sobic003G001000 Sobic001G253700--Sobic003G001000 Sobic004G119100 Sobic004G119100 Sobic001G253700--Sobic004G119100 Sobic001G253700--Sobic009G249200 Sobic002G187801 Sobic002G187801 Sobic001G253700--Sobic002G187801 Sobic007G190333 Sobic007G190333 Sobic001G253700--Sobic007G190333 Sobic006G126100 Sobic006G126100 Sobic008G004600--Sobic006G126100 Sobic006G136400 Sobic006G136400 Sobic008G004600--Sobic006G136400 Sobic004G135400 Sobic004G135400 Sobic008G004600--Sobic004G135400 Sobic005G003300 Sobic005G003300 Sobic008G004600--Sobic005G003300 Sobic008G004600--Sobic010G205800 Sobic006G208500 Sobic006G208500 Sobic008G004600--Sobic006G208500 Sobic004G039600 Sobic004G039600 Sobic008G004600--Sobic004G039600 Sobic008G004600--Sobic001G007000 Sobic002G359400 Sobic002G359400 Sobic008G004600--Sobic002G359400 Sobic004G127700 Sobic004G127700 Sobic003G233600--Sobic004G127700 Sobic003G233600--Sobic002G166300 Sobic003G233600--Sobic009G199200 Sobic003G233600--Sobic010G205800 Sobic003G233600--Sobic001G079200 Sobic003G233600--Sobic001G000200 Sobic004G296400 Sobic004G296400 Sobic003G233600--Sobic004G296400 Sobic003G273600 Sobic003G273600 Sobic003G233600--Sobic003G273600 Sobic004G136300 Sobic004G136300 Sobic003G233600--Sobic004G136300 Sobic001G178700 Sobic001G178700 Sobic001G291000--Sobic001G178700 Sobic004G113400 Sobic004G113400 Sobic001G291000--Sobic004G113400 Sobic009G010600 Sobic009G010600 Sobic001G291000--Sobic009G010600 Sobic006G280200 Sobic006G280200 Sobic001G291000--Sobic006G280200 Sobic010G276900 Sobic010G276900 Sobic001G291000--Sobic010G276900 Sobic003G408600 Sobic003G408600 Sobic001G291000--Sobic003G408600 Sobic004G005100 Sobic004G005100 Sobic001G291000--Sobic004G005100 Sobic001G280900 Sobic001G280900 Sobic001G291000--Sobic001G280900 Sobic006G055200 Sobic006G055200 Sobic001G291000--Sobic006G055200 Sobic001G079200--Sobic001G390800 Sobic001G079200--Sobic010G205800 Sobic001G079200--Sobic003G233600 Sobic001G241100 Sobic001G241100 Sobic001G079200--Sobic001G241100 Sobic001G079200--Sobic006G126100 Sobic001G079200--Sobic001G007000 Sobic001G079200--Sobic003G273600 Sobic003G169600 Sobic003G169600 Sobic001G079200--Sobic003G169600 Sobic001G079200--Sobic001G000200 Sobic002G134200 Sobic002G134200 Sobic001G071400--Sobic002G134200 Sobic002G309600 Sobic002G309600 Sobic001G071400--Sobic002G309600 Sobic003G280800 Sobic003G280800 Sobic001G071400--Sobic003G280800 Sobic001G071400--Sobic008G047800 Sobic009G191000 Sobic009G191000 Sobic001G071400--Sobic009G191000 Sobic001G219600 Sobic001G219600 Sobic001G071400--Sobic001G219600 Sobic005G112300 Sobic005G112300 Sobic001G071400--Sobic005G112300 Sobic002G315200 Sobic002G315200 Sobic001G071400--Sobic002G315200 Sobic002G008900 Sobic002G008900 Sobic001G071400--Sobic002G008900
Octagon: transcription factors


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