Gene annotation
Transcriptome id Sobic.004G358600.1
Synonym Sb04g038530
Functional annotation cation efflux family protein, putative, expressed
UniProt C5XWT3
Pfam PF01545
Panther DB PTHR11562 PTHR11562:SF23
NCBI CDD KOG1484; Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily)
KEGG Orthology K14692; SLC30A5_7, ZNT5_7, MTP, solute carrier family 30 (zinc transporter), member 5/7
Gene Ontology GO:0016021; integral component of membrane GO:0008324cation transmembrane transporter activity GO:0006812cation transport


Orthologs (automatic annotation)
TAIR AT3G12100 : Cation efflux family protein
RAP-DB (Rice) LOC_Os02g58580.5 : cation efflux family protein, putative, expressed
MaizeGDB (Corn) Zm00025a032697
Brachypodium KQK02181
Barley HORVU6Hr1G095110.10 , HORVU6Hr1G095110.11 , HORVU6Hr1G095110.4 , HORVU6Hr1G095110.5 , HORVU6Hr1G095110.6 , HORVU6Hr1G095110.7 , HORVU6Hr1G095110.1 , HORVU6Hr1G095110.2 , HORVU6Hr1G095110.3 , HORVU6Hr1G095110.8
Wheat TraesCS6B02G468900 , TraesCS6B02G468900 , TraesCS6A02G419700 , TraesCS6D02G406400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G044800 hydrolase, alpha/beta fold family domain containing protein, expressed -
2 Sobic.003G012200 tRNA synthetases class II domain containing protein, expressed K01876: aspartyl-tRNA synthetase
3 Sobic.001G000200 TBC domain containing protein, expressed -
4 Sobic.010G205800 palmitoyltransferase TIP1, putative, expressed K18932: palmitoyltransferase
5 Sobic.010G002400 glutamine cyclotransferase precursor, putative, expressed -
6 Sobic.008G004600 ubiquitin-activating enzyme, putative, expressed K03178: UBE1, ubiquitin-activating enzyme E1
7 Sobic.002G361300 eukaryotic aspartyl protease domain containing protein, expressed -
8 Sobic.003G372000 proton-dependent oligopeptide transport, putative, expressed -
9 Sobic.009G199200 gamma-glutamyl hydrolase precursor, putative, expressed K01307: gamma-glutamyl hydrolase
10 Sobic.010G176500 expressed protein -
11 Sobic.004G127700 alpha-1,2-fucosidase, putative, expressed K15923: AXY8, FUC95A, alpha-L-fucosidase 2
12 Sobic.009G017400 "gsn1/LARGE8(Ortholog in rice:Gou et al., 2018(PubMedID : 31659915)@dual specificity protein phosphatase, putative, expressed -
13 Sobic.003G233600 aspartyl aminopeptidase, putative, expressed K01267: aspartyl aminopeptidase
14 Sobic.001G085100 expressed protein -
15 Sobic.001G079200 STE_MEKK_ste11_MAP3K.15 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
16 Sobic.002G166300 peroxin-3 family protein, putative, expressed K13336: peroxin-3
17 Sobic.002G092300 WD domain, G-beta repeat domain containing protein, expressed -
18 Sobic.008G076800 expressed protein -
19 Sobic.005G155700 methyltransferase, putative, expressed -
20 Sobic.004G175300 leucine-rich repeat receptor-like protein kinase 1, putative, expressed K03660: N-glycosylase/DNA lyase


Gene co-expression network
sample Sobic004G358600 Sobic004G358600 Sobic005G044800 Sobic005G044800 Sobic004G358600--Sobic005G044800 Sobic003G012200 Sobic003G012200 Sobic004G358600--Sobic003G012200 Sobic001G000200 Sobic001G000200 Sobic004G358600--Sobic001G000200 Sobic010G205800 Sobic010G205800 Sobic004G358600--Sobic010G205800 Sobic010G002400 Sobic010G002400 Sobic004G358600--Sobic010G002400 Sobic008G004600 Sobic008G004600 Sobic004G358600--Sobic008G004600 Sobic002G361300 Sobic002G361300 Sobic004G358600--Sobic002G361300 Sobic003G372000 Sobic003G372000 Sobic004G358600--Sobic003G372000 Sobic009G199200 Sobic009G199200 Sobic004G358600--Sobic009G199200 Sobic005G044800--Sobic004G358600 Sobic005G044800--Sobic003G012200 Sobic005G044800--Sobic003G372000 Sobic006G244700 Sobic006G244700 Sobic005G044800--Sobic006G244700 Sobic003G344900 Sobic003G344900 Sobic005G044800--Sobic003G344900 Sobic004G127700 Sobic004G127700 Sobic005G044800--Sobic004G127700 Sobic002G116900 Sobic002G116900 Sobic005G044800--Sobic002G116900 Sobic003G273600 Sobic003G273600 Sobic005G044800--Sobic003G273600 Sobic003G055700 Sobic003G055700 Sobic005G044800--Sobic003G055700 Sobic001G199100 Sobic001G199100 Sobic003G012200--Sobic001G199100 Sobic003G012200--Sobic003G344900 Sobic010G000900 Sobic010G000900 Sobic003G012200--Sobic010G000900 Sobic001G085100 Sobic001G085100 Sobic003G012200--Sobic001G085100 Sobic004G348300 Sobic004G348300 Sobic003G012200--Sobic004G348300 Sobic009G075800 Sobic009G075800 Sobic003G012200--Sobic009G075800 Sobic004G275700 Sobic004G275700 Sobic003G012200--Sobic004G275700 Sobic009G259400 Sobic009G259400 Sobic003G012200--Sobic009G259400 Sobic001G047400 Sobic001G047400 Sobic003G012200--Sobic001G047400 Sobic001G000200--Sobic009G199200 Sobic001G000200--Sobic010G205800 Sobic006G237400 Sobic006G237400 Sobic001G000200--Sobic006G237400 Sobic001G253700 Sobic001G253700 Sobic001G000200--Sobic001G253700 Sobic001G000200--Sobic008G004600 Sobic003G233600 Sobic003G233600 Sobic001G000200--Sobic003G233600 Sobic001G291000 Sobic001G291000 Sobic001G000200--Sobic001G291000 Sobic001G079200 Sobic001G079200 Sobic001G000200--Sobic001G079200 Sobic001G071400 Sobic001G071400 Sobic001G000200--Sobic001G071400 Sobic001G121200 Sobic001G121200 Sobic010G205800--Sobic001G121200 Sobic001G390800 Sobic001G390800 Sobic010G205800--Sobic001G390800 Sobic001G124200 Sobic001G124200 Sobic010G205800--Sobic001G124200 Sobic001G007000 Sobic001G007000 Sobic010G205800--Sobic001G007000 Sobic010G205800--Sobic001G000200 Sobic002G262900 Sobic002G262900 Sobic010G205800--Sobic002G262900 Sobic004G274200 Sobic004G274200 Sobic010G205800--Sobic004G274200 Sobic006G199200 Sobic006G199200 Sobic010G205800--Sobic006G199200 Sobic010G205800--Sobic001G079200 Sobic003G338500 Sobic003G338500 Sobic010G002400--Sobic003G338500 Sobic010G002400--Sobic004G275700 Sobic001G201500 Sobic001G201500 Sobic010G002400--Sobic001G201500 Sobic010G193900 Sobic010G193900 Sobic010G002400--Sobic010G193900 Sobic005G155700 Sobic005G155700 Sobic010G002400--Sobic005G155700 Sobic010G223300 Sobic010G223300 Sobic010G002400--Sobic010G223300 Sobic002G308500 Sobic002G308500 Sobic010G002400--Sobic002G308500 Sobic010G002400--Sobic003G012200 Sobic006G176600 Sobic006G176600 Sobic010G002400--Sobic006G176600 Sobic006G126100 Sobic006G126100 Sobic008G004600--Sobic006G126100 Sobic006G136400 Sobic006G136400 Sobic008G004600--Sobic006G136400 Sobic004G135400 Sobic004G135400 Sobic008G004600--Sobic004G135400 Sobic005G003300 Sobic005G003300 Sobic008G004600--Sobic005G003300 Sobic008G004600--Sobic010G205800 Sobic006G208500 Sobic006G208500 Sobic008G004600--Sobic006G208500 Sobic004G039600 Sobic004G039600 Sobic008G004600--Sobic004G039600 Sobic008G004600--Sobic001G007000 Sobic002G359400 Sobic002G359400 Sobic008G004600--Sobic002G359400 Sobic001G394600 Sobic001G394600 Sobic002G361300--Sobic001G394600 Sobic009G257200 Sobic009G257200 Sobic002G361300--Sobic009G257200 Sobic002G361300--Sobic010G205800 Sobic001G127000 Sobic001G127000 Sobic002G361300--Sobic001G127000 Sobic007G120500 Sobic007G120500 Sobic002G361300--Sobic007G120500 Sobic009G224000 Sobic009G224000 Sobic002G361300--Sobic009G224000 Sobic001G114000 Sobic001G114000 Sobic002G361300--Sobic001G114000 Sobic002G361300--Sobic004G039600 Sobic002G361300--Sobic004G358600 Sobic003G372000--Sobic001G085100 Sobic003G372000--Sobic005G044800 Sobic003G372000--Sobic003G012200 Sobic001G283200 Sobic001G283200 Sobic003G372000--Sobic001G283200 Sobic009G123600 Sobic009G123600 Sobic003G372000--Sobic009G123600 Sobic003G372000--Sobic004G358600 Sobic003G261400 Sobic003G261400 Sobic003G372000--Sobic003G261400 Sobic003G372000--Sobic006G244700 Sobic003G372000--Sobic009G075800 Sobic009G199200--Sobic001G000200 Sobic009G199200--Sobic003G233600 Sobic009G199200--Sobic008G004600 Sobic002G317300 Sobic002G317300 Sobic009G199200--Sobic002G317300 Sobic009G199200--Sobic010G205800 Sobic001G186800 Sobic001G186800 Sobic009G199200--Sobic001G186800 Sobic001G281600 Sobic001G281600 Sobic009G199200--Sobic001G281600 Sobic002G166300 Sobic002G166300 Sobic009G199200--Sobic002G166300 Sobic002G260900 Sobic002G260900 Sobic009G199200--Sobic002G260900
Octagon: transcription factors


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