Gene annotation
Transcriptome id Sobic.009G017400.3,Sobic.009G017400.4,Sobic.009G017400.2,Sobic.009G017400.1
Synonym ATMKP1, Sb09g001660, MKP1
Functional annotation "gsn1/LARGE8(Ortholog in rice:Gou et al., 2018 (PubMedID : 31659915)
dual specificity protein phosphatase, putative, expressed
UniProt A0A1Z5R1E8 , A0A1B6P601 , A0A1Z5R0E7
Pfam PF00782
Panther DB PTHR10159 PTHR10159:SF359
NCBI CDD KOG1716; Dual specificity phosphatase
KEGG Orthology -
Gene Ontology GO:0008138; protein tyrosine/serine/threonine phosphatase activity GO:0006470protein dephosphorylation


Orthologs (automatic annotation)
TAIR AT3G55270 : mitogen-activated protein kinase phosphatase 1
RAP-DB (Rice) LOC_Os05g02500.1 : dual specificity protein phosphatase, putative, expressed
MaizeGDB (Corn) Zm00025a038240 , Zm00025a040847 , Zm00025a040848
Brachypodium KQK07754 , KQK07752 , KQK07753
Barley HORVU1Hr1G008230.1 , HORVU1Hr1G008230.2 , HORVU1Hr1G008230.3 , HORVU1Hr1G008230.4 , HORVU1Hr1G008230.5 , HORVU1Hr1G008230.6
Wheat TraesCS1D02G046000 , TraesCS1D02G046000 , TraesCS1A02G045300 , TraesCS1A02G045300 , TraesCS1B02G058600 , TraesCS1B02G058600
Populus -


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cDNA sequences
Sobic.009G017400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G199200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
2 Sobic.001G493200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
3 Sobic.004G021200 expressed protein -
4 Sobic.002G276100 OsLonP4 - Putative Lon protease homologue, expressed K01338: ATP-dependent Lon protease
5 Sobic.001G281600 cyclin-dependent kinase E-1, putative, expressed K02208: cyclin-dependent kinase 8/11
6 Sobic.003G266001 - -
7 Sobic.002G313400 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12815: DHX38, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16
8 Sobic.002G122600 ankyrin repeat domain containing protein, expressed -
9 Sobic.010G205800 palmitoyltransferase TIP1, putative, expressed K18932: palmitoyltransferase
10 Sobic.005G027400 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
11 Sobic.005G106500 oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed K11165: dehydrogenase/reductase SDR family member 7
12 Sobic.001G300100 - -
13 Sobic.001G000200 TBC domain containing protein, expressed -
14 Sobic.007G136800 polypyrimidine tract-binding protein, putative, expressed K14948: PTBP2, polypyrimidine tract-binding protein 2
15 Sobic.002G166300 peroxin-3 family protein, putative, expressed K13336: peroxin-3
16 Sobic.004G358600 cation efflux family protein, putative, expressed K14692: SLC30A5_7, ZNT5_7, MTP, solute carrier family 30 (zinc transporter), member 5/7
17 Sobic.010G079900 AT hook-containing DNA-binding protein, putative, expressed -
18 Sobic.003G018900 bromodomain containing protein, expressed K11684: bromodomain-containing factor 1
19 Sobic.002G260900 protein kinase domain containing protein, expressed K13429: chitin elicitor receptor kinase 1
20 Sobic.002G092300 WD domain, G-beta repeat domain containing protein, expressed -


Gene co-expression network
sample Sobic009G017400 Sobic009G017400 Sobic006G199200 Sobic006G199200 Sobic009G017400--Sobic006G199200 Sobic001G493200 Sobic001G493200 Sobic009G017400--Sobic001G493200 Sobic004G021200 Sobic004G021200 Sobic009G017400--Sobic004G021200 Sobic002G276100 Sobic002G276100 Sobic009G017400--Sobic002G276100 Sobic001G281600 Sobic001G281600 Sobic009G017400--Sobic001G281600 Sobic003G266001 Sobic003G266001 Sobic009G017400--Sobic003G266001 Sobic002G313400 Sobic002G313400 Sobic009G017400--Sobic002G313400 Sobic002G122600 Sobic002G122600 Sobic009G017400--Sobic002G122600 Sobic010G205800 Sobic010G205800 Sobic009G017400--Sobic010G205800 Sobic003G195000 Sobic003G195000 Sobic006G199200--Sobic003G195000 Sobic006G199200--Sobic010G205800 Sobic006G199200--Sobic001G493200 Sobic001G241100 Sobic001G241100 Sobic006G199200--Sobic001G241100 Sobic005G027400 Sobic005G027400 Sobic006G199200--Sobic005G027400 Sobic010G079900 Sobic010G079900 Sobic006G199200--Sobic010G079900 Sobic001G121200 Sobic001G121200 Sobic006G199200--Sobic001G121200 Sobic006G160300 Sobic006G160300 Sobic006G199200--Sobic006G160300 Sobic001G289800 Sobic001G289800 Sobic006G199200--Sobic001G289800 Sobic009G084900 Sobic009G084900 Sobic001G493200--Sobic009G084900 Sobic001G493200--Sobic003G266001 Sobic010G059500 Sobic010G059500 Sobic001G493200--Sobic010G059500 Sobic001G433800 Sobic001G433800 Sobic001G493200--Sobic001G433800 Sobic004G072100 Sobic004G072100 Sobic001G493200--Sobic004G072100 Sobic004G096400 Sobic004G096400 Sobic001G493200--Sobic004G096400 Sobic007G132100 Sobic007G132100 Sobic001G493200--Sobic007G132100 Sobic006G077200 Sobic006G077200 Sobic001G493200--Sobic006G077200 Sobic003G408600 Sobic003G408600 Sobic001G493200--Sobic003G408600 Sobic004G021200--Sobic003G266001 Sobic008G103200 Sobic008G103200 Sobic004G021200--Sobic008G103200 Sobic010G279700 Sobic010G279700 Sobic004G021200--Sobic010G279700 Sobic004G021200--Sobic001G281600 Sobic008G083000 Sobic008G083000 Sobic004G021200--Sobic008G083000 Sobic006G273200 Sobic006G273200 Sobic004G021200--Sobic006G273200 Sobic005G106500 Sobic005G106500 Sobic004G021200--Sobic005G106500 Sobic007G096000 Sobic007G096000 Sobic004G021200--Sobic007G096000 Sobic002G310200 Sobic002G310200 Sobic004G021200--Sobic002G310200 Sobic003G381200 Sobic003G381200 Sobic002G276100--Sobic003G381200 Sobic004G026500 Sobic004G026500 Sobic002G276100--Sobic004G026500 Sobic004G181700 Sobic004G181700 Sobic002G276100--Sobic004G181700 Sobic001G159400 Sobic001G159400 Sobic002G276100--Sobic001G159400 Sobic010G138000 Sobic010G138000 Sobic002G276100--Sobic010G138000 Sobic002G168500 Sobic002G168500 Sobic002G276100--Sobic002G168500 Sobic009G193500 Sobic009G193500 Sobic002G276100--Sobic009G193500 Sobic008G172300 Sobic008G172300 Sobic002G276100--Sobic008G172300 Sobic001G268200 Sobic001G268200 Sobic002G276100--Sobic001G268200 Sobic001G281600--Sobic010G279700 Sobic007G078500 Sobic007G078500 Sobic001G281600--Sobic007G078500 Sobic006G200600 Sobic006G200600 Sobic001G281600--Sobic006G200600 Sobic003G401100 Sobic003G401100 Sobic001G281600--Sobic003G401100 Sobic004G121100 Sobic004G121100 Sobic001G281600--Sobic004G121100 Sobic009G215800 Sobic009G215800 Sobic001G281600--Sobic009G215800 Sobic004G084300 Sobic004G084300 Sobic001G281600--Sobic004G084300 Sobic009G050900 Sobic009G050900 Sobic001G281600--Sobic009G050900 Sobic008G179700 Sobic008G179700 Sobic001G281600--Sobic008G179700 Sobic003G266001--Sobic001G493200 Sobic005G128400 Sobic005G128400 Sobic003G266001--Sobic005G128400 Sobic003G266001--Sobic008G103200 Sobic010G069100 Sobic010G069100 Sobic003G266001--Sobic010G069100 Sobic003G266001--Sobic003G408600 Sobic003G266001--Sobic004G072100 Sobic003G266001--Sobic004G021200 Sobic001G311500 Sobic001G311500 Sobic003G266001--Sobic001G311500 Sobic007G159900 Sobic007G159900 Sobic003G266001--Sobic007G159900 Sobic001G219600 Sobic001G219600 Sobic002G313400--Sobic001G219600 Sobic009G260500 Sobic009G260500 Sobic002G313400--Sobic009G260500 Sobic002G309600 Sobic002G309600 Sobic002G313400--Sobic002G309600 Sobic008G011100 Sobic008G011100 Sobic002G313400--Sobic008G011100 Sobic001G002000 Sobic001G002000 Sobic002G313400--Sobic001G002000 Sobic007G117400 Sobic007G117400 Sobic002G313400--Sobic007G117400 Sobic001G111600 Sobic001G111600 Sobic002G313400--Sobic001G111600 Sobic008G047800 Sobic008G047800 Sobic002G313400--Sobic008G047800 Sobic002G313400--Sobic001G493200 Sobic002G122600--Sobic001G281600 Sobic002G122600--Sobic009G215800 Sobic010G268300 Sobic010G268300 Sobic002G122600--Sobic010G268300 Sobic002G309800 Sobic002G309800 Sobic002G122600--Sobic002G309800 Sobic004G083700 Sobic004G083700 Sobic002G122600--Sobic004G083700 Sobic001G429300 Sobic001G429300 Sobic002G122600--Sobic001G429300 Sobic003G078800 Sobic003G078800 Sobic002G122600--Sobic003G078800 Sobic003G196900 Sobic003G196900 Sobic002G122600--Sobic003G196900 Sobic002G122600--Sobic009G017400 Sobic010G205800--Sobic001G121200 Sobic001G390800 Sobic001G390800 Sobic010G205800--Sobic001G390800 Sobic001G124200 Sobic001G124200 Sobic010G205800--Sobic001G124200 Sobic001G007000 Sobic001G007000 Sobic010G205800--Sobic001G007000 Sobic001G000200 Sobic001G000200 Sobic010G205800--Sobic001G000200 Sobic002G262900 Sobic002G262900 Sobic010G205800--Sobic002G262900 Sobic004G274200 Sobic004G274200 Sobic010G205800--Sobic004G274200 Sobic010G205800--Sobic006G199200 Sobic001G079200 Sobic001G079200 Sobic010G205800--Sobic001G079200
Octagon: transcription factors


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