Gene annotation
Transcriptome id Sobic.003G018900.1
Synonym Sb03g001920, GTE4
Functional annotation bromodomain containing protein, expressed
UniProt C5XL16
Pfam PF00439 PF17035
Panther DB PTHR22880 PTHR22880:SF138
NCBI CDD -
KEGG Orthology K11684; bromodomain-containing factor 1
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G06230 : global transcription factor group E4
RAP-DB (Rice) LOC_Os01g11580.1 : bromodomain containing protein, expressed
MaizeGDB (Corn) Zm00025a035904 , Zm00025a022909
Brachypodium PNT70156 , PNT70155
Barley -
Wheat TraesCS3A02G140500 , TraesCS3D02G146600 , TraesCS3B02G164100
Populus -


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cDNA sequences
Sobic.003G018900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G273200 "PKc_like super family, protein kjinases, catalytic domain"(PubMedID : 29491869)@protein kinase family protein, putative, expressed K14500: BR-signaling kinase
2 Sobic.004G021200 expressed protein -
3 Sobic.009G157200 OsFBL23 - F-box domain and LRR containing protein, expressed K13463: coronatine-insensitive protein 1
4 Sobic.010G279700 signal peptide peptidase-like 2B, putative, expressed -
5 Sobic.007G078500 serine/threonine-protein kinase HT1, putative, expressed -
6 Sobic.001G281600 cyclin-dependent kinase E-1, putative, expressed K02208: cyclin-dependent kinase 8/11
7 Sobic.007G115200 hydrolase, NUDIX family, domain containing protein, expressed -
8 Sobic.004G087600 RNA recognition motif containing protein, putative, expressed -
9 Sobic.003G250500 splicing factor U2AF, putative, expressed K12836: splicing factor U2AF 35 kDa subunit
10 Sobic.004G205600 bromodomain domain containing protein, expressed -
11 Sobic.008G165700 expressed protein -
12 Sobic.001G298600 ribosomal L18p/L5e family protein, expressed -
13 Sobic.009G005500 expressed protein -
14 Sobic.010G268300 protein phosphatase 2C, putative, expressed -
15 Sobic.005G106500 oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed K11165: dehydrogenase/reductase SDR family member 7
16 Sobic.001G253700 protein kinase domain containing protein, expressed K04733: interleukin-1 receptor-associated kinase 4
17 Sobic.002G092300 WD domain, G-beta repeat domain containing protein, expressed -
18 Sobic.007G009400 bromodomain domain containing protein, expressed -
19 Sobic.001G191100 OsFBX157 - F-box domain containing protein, expressed -
20 Sobic.009G017400 "gsn1/LARGE8(Ortholog in rice:Gou et al., 2018(PubMedID : 31659915)@dual specificity protein phosphatase, putative, expressed -


Gene co-expression network
sample Sobic003G018900 Sobic003G018900 Sobic006G273200 Sobic006G273200 Sobic003G018900--Sobic006G273200 Sobic004G021200 Sobic004G021200 Sobic003G018900--Sobic004G021200 Sobic009G157200 Sobic009G157200 Sobic003G018900--Sobic009G157200 Sobic010G279700 Sobic010G279700 Sobic003G018900--Sobic010G279700 Sobic007G078500 Sobic007G078500 Sobic003G018900--Sobic007G078500 Sobic001G281600 Sobic001G281600 Sobic003G018900--Sobic001G281600 Sobic007G115200 Sobic007G115200 Sobic003G018900--Sobic007G115200 Sobic004G087600 Sobic004G087600 Sobic003G018900--Sobic004G087600 Sobic003G250500 Sobic003G250500 Sobic003G018900--Sobic003G250500 Sobic001G497300 Sobic001G497300 Sobic006G273200--Sobic001G497300 Sobic009G065100 Sobic009G065100 Sobic006G273200--Sobic009G065100 Sobic004G205600 Sobic004G205600 Sobic006G273200--Sobic004G205600 Sobic007G096000 Sobic007G096000 Sobic006G273200--Sobic007G096000 Sobic009G233300 Sobic009G233300 Sobic006G273200--Sobic009G233300 Sobic008G062000 Sobic008G062000 Sobic006G273200--Sobic008G062000 Sobic006G237400 Sobic006G237400 Sobic006G273200--Sobic006G237400 Sobic007G205800 Sobic007G205800 Sobic006G273200--Sobic007G205800 Sobic003G176600 Sobic003G176600 Sobic006G273200--Sobic003G176600 Sobic003G266001 Sobic003G266001 Sobic004G021200--Sobic003G266001 Sobic008G103200 Sobic008G103200 Sobic004G021200--Sobic008G103200 Sobic004G021200--Sobic010G279700 Sobic004G021200--Sobic001G281600 Sobic008G083000 Sobic008G083000 Sobic004G021200--Sobic008G083000 Sobic004G021200--Sobic006G273200 Sobic005G106500 Sobic005G106500 Sobic004G021200--Sobic005G106500 Sobic004G021200--Sobic007G096000 Sobic002G310200 Sobic002G310200 Sobic004G021200--Sobic002G310200 Sobic001G291100 Sobic001G291100 Sobic009G157200--Sobic001G291100 Sobic010G056200 Sobic010G056200 Sobic009G157200--Sobic010G056200 Sobic003G084700 Sobic003G084700 Sobic009G157200--Sobic003G084700 Sobic009G157200--Sobic001G281600 Sobic009G157200--Sobic003G018900 Sobic009G157200--Sobic003G250500 Sobic009G157200--Sobic006G273200 Sobic009G157200--Sobic007G078500 Sobic009G157200--Sobic004G205600 Sobic010G279700--Sobic001G281600 Sobic010G279700--Sobic008G083000 Sobic003G401100 Sobic003G401100 Sobic010G279700--Sobic003G401100 Sobic001G094900 Sobic001G094900 Sobic010G279700--Sobic001G094900 Sobic007G191700 Sobic007G191700 Sobic010G279700--Sobic007G191700 Sobic010G279700--Sobic005G106500 Sobic008G092300 Sobic008G092300 Sobic010G279700--Sobic008G092300 Sobic007G203200 Sobic007G203200 Sobic010G279700--Sobic007G203200 Sobic010G279700--Sobic004G021200 Sobic007G078500--Sobic001G281600 Sobic007G078600 Sobic007G078600 Sobic007G078500--Sobic007G078600 Sobic004G121100 Sobic004G121100 Sobic007G078500--Sobic004G121100 Sobic009G179700 Sobic009G179700 Sobic007G078500--Sobic009G179700 Sobic008G179700 Sobic008G179700 Sobic007G078500--Sobic008G179700 Sobic008G076800 Sobic008G076800 Sobic007G078500--Sobic008G076800 Sobic001G080700 Sobic001G080700 Sobic007G078500--Sobic001G080700 Sobic007G078500--Sobic010G279700 Sobic001G375700 Sobic001G375700 Sobic007G078500--Sobic001G375700 Sobic001G281600--Sobic010G279700 Sobic001G281600--Sobic007G078500 Sobic006G200600 Sobic006G200600 Sobic001G281600--Sobic006G200600 Sobic001G281600--Sobic003G401100 Sobic001G281600--Sobic004G121100 Sobic009G215800 Sobic009G215800 Sobic001G281600--Sobic009G215800 Sobic004G084300 Sobic004G084300 Sobic001G281600--Sobic004G084300 Sobic009G050900 Sobic009G050900 Sobic001G281600--Sobic009G050900 Sobic001G281600--Sobic008G179700 Sobic001G107500 Sobic001G107500 Sobic007G115200--Sobic001G107500 Sobic001G016000 Sobic001G016000 Sobic007G115200--Sobic001G016000 Sobic001G309400 Sobic001G309400 Sobic007G115200--Sobic001G309400 Sobic007G104800 Sobic007G104800 Sobic007G115200--Sobic007G104800 Sobic002G347000 Sobic002G347000 Sobic007G115200--Sobic002G347000 Sobic002G363600 Sobic002G363600 Sobic007G115200--Sobic002G363600 Sobic002G351900 Sobic002G351900 Sobic007G115200--Sobic002G351900 Sobic007G115200--Sobic001G281600 Sobic002G092300 Sobic002G092300 Sobic007G115200--Sobic002G092300 Sobic008G011100 Sobic008G011100 Sobic004G087600--Sobic008G011100 Sobic004G018300 Sobic004G018300 Sobic004G087600--Sobic004G018300 Sobic004G087600--Sobic005G106500 Sobic002G031400 Sobic002G031400 Sobic004G087600--Sobic002G031400 Sobic002G309800 Sobic002G309800 Sobic004G087600--Sobic002G309800 Sobic003G133900 Sobic003G133900 Sobic004G087600--Sobic003G133900 Sobic004G087600--Sobic001G281600 Sobic001G124000 Sobic001G124000 Sobic004G087600--Sobic001G124000 Sobic001G360900 Sobic001G360900 Sobic004G087600--Sobic001G360900 Sobic004G059000 Sobic004G059000 Sobic003G250500--Sobic004G059000 Sobic004G305600 Sobic004G305600 Sobic003G250500--Sobic004G305600 Sobic004G301900 Sobic004G301900 Sobic003G250500--Sobic004G301900 Sobic003G250500--Sobic008G062000 Sobic003G250500--Sobic001G281600 Sobic003G226500 Sobic003G226500 Sobic003G250500--Sobic003G226500 Sobic004G253000 Sobic004G253000 Sobic003G250500--Sobic004G253000 Sobic001G512600 Sobic001G512600 Sobic003G250500--Sobic001G512600 Sobic001G119300 Sobic001G119300 Sobic003G250500--Sobic001G119300
Octagon: transcription factors


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