Gene annotation
Transcriptome id Sobic.009G157200.1
Synonym COI1, Sb09g022040
Functional annotation OsFBL23 - F-box domain and LRR containing protein, expressed
UniProt C5YYV2
Pfam -
Panther DB PTHR24006 PTHR24006:SF428
NCBI CDD KOG1947; Leucine rich repeat proteins, some proteins contain F-box
KEGG Orthology K13463; coronatine-insensitive protein 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G39940 : RNI-like superfamily protein
RAP-DB (Rice) LOC_Os05g37690.1 : OsFBL23 - F-box domain and LRR containing protein, expressed
MaizeGDB (Corn) Zm00025a043785 , Zm00025a039620 , Zm00025a044600 , Zm00025a037203
Brachypodium KQK05983 , KQK05982
Barley HORVU1Hr1G073230.2 , HORVU1Hr1G073230.3 , HORVU1Hr1G073230.1 , HORVU1Hr1G073230.6 , HORVU3Hr1G085210.3 , HORVU3Hr1G085210.2 , HORVU3Hr1G085210.1
Wheat TraesCS1D02G278400 , TraesCS3D02G360400 , TraesCS1A02G279100 , TraesCS1B02G288100 , TraesCS3B02G399200 , TraesCS3B02G399200 , TraesCS3D02G360400 , TraesCS3D02G360400 , TraesCS3A02G367500
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.009G157200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G291100 tetraspanin family protein, putative, expressed -
2 Sobic.010G056200 WD-40 repeat family protein, putative, expressed -
3 Sobic.003G084700 - -
4 Sobic.001G281600 cyclin-dependent kinase E-1, putative, expressed K02208: cyclin-dependent kinase 8/11
5 Sobic.003G018900 bromodomain containing protein, expressed K11684: bromodomain-containing factor 1
6 Sobic.003G250500 splicing factor U2AF, putative, expressed K12836: splicing factor U2AF 35 kDa subunit
7 Sobic.006G273200 "PKc_like super family, protein kjinases, catalytic domain"(PubMedID : 29491869)@protein kinase family protein, putative, expressed K14500: BR-signaling kinase
8 Sobic.007G078500 serine/threonine-protein kinase HT1, putative, expressed -
9 Sobic.004G205600 bromodomain domain containing protein, expressed -
10 Sobic.004G121100 expressed protein -
11 Sobic.010G279700 signal peptide peptidase-like 2B, putative, expressed -
12 Sobic.004G057400 copper-transporting ATPase, putative, expressed K17686: copA, ctpA, P-type Cu+ transporter
13 Sobic.004G150400 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
14 Sobic.002G351900 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
15 Sobic.001G107500 cyclin-dependent kinase, putative, expressed K08819: cyclin-dependent kinase 12/13
16 Sobic.004G083700 expressed protein -
17 Sobic.008G062000 expressed protein K11878: PSMG4, proteasome assembly chaperone 4
18 Sobic.009G259400 pleckstrin homology domain-containing protein-related taxo, putative, expressed -
19 Sobic.004G271900 RMD5 homolog A, putative, expressed -
20 Sobic.004G119000 OsFBK6 - F-box domain and kelch repeat containing protein, expressed -


Gene co-expression network
sample Sobic009G157200 Sobic009G157200 Sobic001G291100 Sobic001G291100 Sobic009G157200--Sobic001G291100 Sobic010G056200 Sobic010G056200 Sobic009G157200--Sobic010G056200 Sobic003G084700 Sobic003G084700 Sobic009G157200--Sobic003G084700 Sobic001G281600 Sobic001G281600 Sobic009G157200--Sobic001G281600 Sobic003G018900 Sobic003G018900 Sobic009G157200--Sobic003G018900 Sobic003G250500 Sobic003G250500 Sobic009G157200--Sobic003G250500 Sobic006G273200 Sobic006G273200 Sobic009G157200--Sobic006G273200 Sobic007G078500 Sobic007G078500 Sobic009G157200--Sobic007G078500 Sobic004G205600 Sobic004G205600 Sobic009G157200--Sobic004G205600 Sobic001G291100--Sobic009G157200 Sobic001G291100--Sobic001G281600 Sobic004G119000 Sobic004G119000 Sobic001G291100--Sobic004G119000 Sobic001G291100--Sobic010G056200 Sobic001G119300 Sobic001G119300 Sobic001G291100--Sobic001G119300 Sobic004G150400 Sobic004G150400 Sobic001G291100--Sobic004G150400 Sobic001G107500 Sobic001G107500 Sobic001G291100--Sobic001G107500 Sobic006G088100 Sobic006G088100 Sobic001G291100--Sobic006G088100 Sobic004G083700 Sobic004G083700 Sobic001G291100--Sobic004G083700 Sobic010G056200--Sobic001G107500 Sobic004G113800 Sobic004G113800 Sobic010G056200--Sobic004G113800 Sobic010G056200--Sobic004G083700 Sobic007G052900 Sobic007G052900 Sobic010G056200--Sobic007G052900 Sobic003G324000 Sobic003G324000 Sobic010G056200--Sobic003G324000 Sobic009G065100 Sobic009G065100 Sobic010G056200--Sobic009G065100 Sobic006G228500 Sobic006G228500 Sobic010G056200--Sobic006G228500 Sobic002G309800 Sobic002G309800 Sobic010G056200--Sobic002G309800 Sobic010G056200--Sobic009G157200 Sobic003G084700--Sobic001G107500 Sobic007G078600 Sobic007G078600 Sobic003G084700--Sobic007G078600 Sobic003G084700--Sobic009G065100 Sobic004G057400 Sobic004G057400 Sobic003G084700--Sobic004G057400 Sobic008G067600 Sobic008G067600 Sobic003G084700--Sobic008G067600 Sobic001G315100 Sobic001G315100 Sobic003G084700--Sobic001G315100 Sobic001G090400 Sobic001G090400 Sobic003G084700--Sobic001G090400 Sobic004G271900 Sobic004G271900 Sobic003G084700--Sobic004G271900 Sobic009G215800 Sobic009G215800 Sobic003G084700--Sobic009G215800 Sobic010G279700 Sobic010G279700 Sobic001G281600--Sobic010G279700 Sobic001G281600--Sobic007G078500 Sobic006G200600 Sobic006G200600 Sobic001G281600--Sobic006G200600 Sobic003G401100 Sobic003G401100 Sobic001G281600--Sobic003G401100 Sobic004G121100 Sobic004G121100 Sobic001G281600--Sobic004G121100 Sobic001G281600--Sobic009G215800 Sobic004G084300 Sobic004G084300 Sobic001G281600--Sobic004G084300 Sobic009G050900 Sobic009G050900 Sobic001G281600--Sobic009G050900 Sobic008G179700 Sobic008G179700 Sobic001G281600--Sobic008G179700 Sobic003G018900--Sobic006G273200 Sobic004G021200 Sobic004G021200 Sobic003G018900--Sobic004G021200 Sobic003G018900--Sobic009G157200 Sobic003G018900--Sobic010G279700 Sobic003G018900--Sobic007G078500 Sobic003G018900--Sobic001G281600 Sobic007G115200 Sobic007G115200 Sobic003G018900--Sobic007G115200 Sobic004G087600 Sobic004G087600 Sobic003G018900--Sobic004G087600 Sobic003G018900--Sobic003G250500 Sobic004G059000 Sobic004G059000 Sobic003G250500--Sobic004G059000 Sobic004G305600 Sobic004G305600 Sobic003G250500--Sobic004G305600 Sobic004G301900 Sobic004G301900 Sobic003G250500--Sobic004G301900 Sobic008G062000 Sobic008G062000 Sobic003G250500--Sobic008G062000 Sobic003G250500--Sobic001G281600 Sobic003G226500 Sobic003G226500 Sobic003G250500--Sobic003G226500 Sobic004G253000 Sobic004G253000 Sobic003G250500--Sobic004G253000 Sobic001G512600 Sobic001G512600 Sobic003G250500--Sobic001G512600 Sobic003G250500--Sobic001G119300 Sobic001G497300 Sobic001G497300 Sobic006G273200--Sobic001G497300 Sobic006G273200--Sobic009G065100 Sobic006G273200--Sobic004G205600 Sobic007G096000 Sobic007G096000 Sobic006G273200--Sobic007G096000 Sobic009G233300 Sobic009G233300 Sobic006G273200--Sobic009G233300 Sobic006G273200--Sobic008G062000 Sobic006G237400 Sobic006G237400 Sobic006G273200--Sobic006G237400 Sobic007G205800 Sobic007G205800 Sobic006G273200--Sobic007G205800 Sobic003G176600 Sobic003G176600 Sobic006G273200--Sobic003G176600 Sobic007G078500--Sobic001G281600 Sobic007G078500--Sobic007G078600 Sobic007G078500--Sobic004G121100 Sobic009G179700 Sobic009G179700 Sobic007G078500--Sobic009G179700 Sobic007G078500--Sobic008G179700 Sobic008G076800 Sobic008G076800 Sobic007G078500--Sobic008G076800 Sobic001G080700 Sobic001G080700 Sobic007G078500--Sobic001G080700 Sobic007G078500--Sobic010G279700 Sobic001G375700 Sobic001G375700 Sobic007G078500--Sobic001G375700 Sobic004G205600--Sobic004G057400 Sobic004G205600--Sobic001G497300 Sobic004G205600--Sobic001G090400 Sobic003G081000 Sobic003G081000 Sobic004G205600--Sobic003G081000 Sobic007G026300 Sobic007G026300 Sobic004G205600--Sobic007G026300 Sobic009G000500 Sobic009G000500 Sobic004G205600--Sobic009G000500 Sobic002G157300 Sobic002G157300 Sobic004G205600--Sobic002G157300 Sobic004G205600--Sobic009G065100 Sobic002G157000 Sobic002G157000 Sobic004G205600--Sobic002G157000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.