Gene annotation
Transcriptome id Sobic.002G351900.1
Synonym Sb02g037390, EMB144, COP10, FUS9, CIN4
Functional annotation ubiquitin-conjugating enzyme, putative, expressed
UniProt C5XCE6
Pfam PF00179
Panther DB PTHR24068
NCBI CDD KOG0417; Ubiquitin-protein ligase
KEGG Orthology K06689; UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G13550 : Ubiquitin-conjugating enzyme family protein
RAP-DB (Rice) LOC_Os07g38940.1 : ubiquitin-conjugating enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a014981 , Zm00025a048495
Brachypodium -
Barley -
Wheat TraesCS2B02G220200 , TraesCS2A02G187000 , TraesCS2D02G200900
Populus -


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cDNA sequences
Sobic.002G351900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G056200 WD-40 repeat family protein, putative, expressed -
2 Sobic.007G115200 hydrolase, NUDIX family, domain containing protein, expressed -
3 Sobic.010G005600 SEC14 cytosolic factor family protein, putative, expressed -
4 Sobic.001G281600 cyclin-dependent kinase E-1, putative, expressed K02208: cyclin-dependent kinase 8/11
5 Sobic.004G121100 expressed protein -
6 Sobic.007G078500 serine/threonine-protein kinase HT1, putative, expressed -
7 Sobic.009G157200 OsFBL23 - F-box domain and LRR containing protein, expressed K13463: coronatine-insensitive protein 1
8 Sobic.007G052900 acetyltransferase, GNAT family, putative, expressed -
9 Sobic.007G095500 expressed protein -
10 Sobic.001G043800 stage II sporulation protein E, putative, expressed -
11 Sobic.001G384900 hypothetical protein K09250: cellular nucleic acid-binding protein
12 Sobic.001G298600 ribosomal L18p/L5e family protein, expressed -
13 Sobic.002G156200 DUF565 domain containing protein, putative, expressed -
14 Sobic.005G106500 oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed K11165: dehydrogenase/reductase SDR family member 7
15 Sobic.004G174400 ZOS2-09 - C2H2 zinc finger protein, expressed -
16 Sobic.010G268300 protein phosphatase 2C, putative, expressed -
17 Sobic.001G291100 tetraspanin family protein, putative, expressed -
18 Sobic.001G375700 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12890: SFRS1, ASF, splicing factor, arginine/serine-rich 1
19 Sobic.003G018900 bromodomain containing protein, expressed K11684: bromodomain-containing factor 1
20 Sobic.002G399100 zinc finger, RING-type, putative, expressed K15688: E3 ubiquitin-protein ligase MUL1


Gene co-expression network
sample Sobic002G351900 Sobic002G351900 Sobic010G056200 Sobic010G056200 Sobic002G351900--Sobic010G056200 Sobic007G115200 Sobic007G115200 Sobic002G351900--Sobic007G115200 Sobic010G005600 Sobic010G005600 Sobic002G351900--Sobic010G005600 Sobic001G281600 Sobic001G281600 Sobic002G351900--Sobic001G281600 Sobic004G121100 Sobic004G121100 Sobic002G351900--Sobic004G121100 Sobic007G078500 Sobic007G078500 Sobic002G351900--Sobic007G078500 Sobic009G157200 Sobic009G157200 Sobic002G351900--Sobic009G157200 Sobic007G052900 Sobic007G052900 Sobic002G351900--Sobic007G052900 Sobic007G095500 Sobic007G095500 Sobic002G351900--Sobic007G095500 Sobic001G107500 Sobic001G107500 Sobic010G056200--Sobic001G107500 Sobic004G113800 Sobic004G113800 Sobic010G056200--Sobic004G113800 Sobic004G083700 Sobic004G083700 Sobic010G056200--Sobic004G083700 Sobic010G056200--Sobic007G052900 Sobic003G324000 Sobic003G324000 Sobic010G056200--Sobic003G324000 Sobic009G065100 Sobic009G065100 Sobic010G056200--Sobic009G065100 Sobic006G228500 Sobic006G228500 Sobic010G056200--Sobic006G228500 Sobic002G309800 Sobic002G309800 Sobic010G056200--Sobic002G309800 Sobic010G056200--Sobic009G157200 Sobic007G115200--Sobic001G107500 Sobic001G016000 Sobic001G016000 Sobic007G115200--Sobic001G016000 Sobic001G309400 Sobic001G309400 Sobic007G115200--Sobic001G309400 Sobic007G104800 Sobic007G104800 Sobic007G115200--Sobic007G104800 Sobic002G347000 Sobic002G347000 Sobic007G115200--Sobic002G347000 Sobic002G363600 Sobic002G363600 Sobic007G115200--Sobic002G363600 Sobic007G115200--Sobic002G351900 Sobic007G115200--Sobic001G281600 Sobic002G092300 Sobic002G092300 Sobic007G115200--Sobic002G092300 Sobic010G005600--Sobic007G052900 Sobic010G176550 Sobic010G176550 Sobic010G005600--Sobic010G176550 Sobic002G031400 Sobic002G031400 Sobic010G005600--Sobic002G031400 Sobic001G159400 Sobic001G159400 Sobic010G005600--Sobic001G159400 Sobic004G174400 Sobic004G174400 Sobic010G005600--Sobic004G174400 Sobic009G215800 Sobic009G215800 Sobic010G005600--Sobic009G215800 Sobic010G005600--Sobic002G351900 Sobic001G384900 Sobic001G384900 Sobic010G005600--Sobic001G384900 Sobic010G005600--Sobic010G056200 Sobic010G279700 Sobic010G279700 Sobic001G281600--Sobic010G279700 Sobic001G281600--Sobic007G078500 Sobic006G200600 Sobic006G200600 Sobic001G281600--Sobic006G200600 Sobic003G401100 Sobic003G401100 Sobic001G281600--Sobic003G401100 Sobic001G281600--Sobic004G121100 Sobic001G281600--Sobic009G215800 Sobic004G084300 Sobic004G084300 Sobic001G281600--Sobic004G084300 Sobic009G050900 Sobic009G050900 Sobic001G281600--Sobic009G050900 Sobic008G179700 Sobic008G179700 Sobic001G281600--Sobic008G179700 Sobic009G205200 Sobic009G205200 Sobic004G121100--Sobic009G205200 Sobic004G121100--Sobic006G200600 Sobic004G121100--Sobic006G228500 Sobic004G121100--Sobic001G281600 Sobic009G259400 Sobic009G259400 Sobic004G121100--Sobic009G259400 Sobic004G121100--Sobic007G078500 Sobic001G080700 Sobic001G080700 Sobic004G121100--Sobic001G080700 Sobic002G350300 Sobic002G350300 Sobic004G121100--Sobic002G350300 Sobic010G251000 Sobic010G251000 Sobic004G121100--Sobic010G251000 Sobic007G078500--Sobic001G281600 Sobic007G078600 Sobic007G078600 Sobic007G078500--Sobic007G078600 Sobic007G078500--Sobic004G121100 Sobic009G179700 Sobic009G179700 Sobic007G078500--Sobic009G179700 Sobic007G078500--Sobic008G179700 Sobic008G076800 Sobic008G076800 Sobic007G078500--Sobic008G076800 Sobic007G078500--Sobic001G080700 Sobic007G078500--Sobic010G279700 Sobic001G375700 Sobic001G375700 Sobic007G078500--Sobic001G375700 Sobic001G291100 Sobic001G291100 Sobic009G157200--Sobic001G291100 Sobic009G157200--Sobic010G056200 Sobic003G084700 Sobic003G084700 Sobic009G157200--Sobic003G084700 Sobic009G157200--Sobic001G281600 Sobic003G018900 Sobic003G018900 Sobic009G157200--Sobic003G018900 Sobic003G250500 Sobic003G250500 Sobic009G157200--Sobic003G250500 Sobic006G273200 Sobic006G273200 Sobic009G157200--Sobic006G273200 Sobic009G157200--Sobic007G078500 Sobic004G205600 Sobic004G205600 Sobic009G157200--Sobic004G205600 Sobic007G052900--Sobic010G056200 Sobic007G052900--Sobic004G113800 Sobic002G209600 Sobic002G209600 Sobic007G052900--Sobic002G209600 Sobic007G052900--Sobic010G005600 Sobic007G052900--Sobic004G083700 Sobic007G054000 Sobic007G054000 Sobic007G052900--Sobic007G054000 Sobic010G280100 Sobic010G280100 Sobic007G052900--Sobic010G280100 Sobic006G180432 Sobic006G180432 Sobic007G052900--Sobic006G180432 Sobic007G052900--Sobic009G065100 Sobic008G067100 Sobic008G067100 Sobic007G095500--Sobic008G067100 Sobic004G208600 Sobic004G208600 Sobic007G095500--Sobic004G208600 Sobic004G225600 Sobic004G225600 Sobic007G095500--Sobic004G225600 Sobic001G382800 Sobic001G382800 Sobic007G095500--Sobic001G382800 Sobic002G293600 Sobic002G293600 Sobic007G095500--Sobic002G293600 Sobic002G343400 Sobic002G343400 Sobic007G095500--Sobic002G343400 Sobic008G090900 Sobic008G090900 Sobic007G095500--Sobic008G090900 Sobic001G494500 Sobic001G494500 Sobic007G095500--Sobic001G494500 Sobic006G058100 Sobic006G058100 Sobic007G095500--Sobic006G058100
Octagon: transcription factors


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