Gene annotation
Transcriptome id Sobic.010G056200.1
Synonym Sb10g004900
Functional annotation WD-40 repeat family protein, putative, expressed
UniProt C5Z508
Pfam PF00400
Panther DB PTHR22847 PTHR22847:SF453
NCBI CDD KOG4532; WD40-like repeat containing protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G56190 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os06g07540.1 : WD-40 repeat family protein, putative, expressed
MaizeGDB (Corn) Zm00025a042844 , Zm00025a049871
Brachypodium KQK19405
Barley HORVU7Hr1G017420.1 , HORVU7Hr1G120170.21 , HORVU7Hr1G120170.27 , HORVU7Hr1G120170.25 , HORVU7Hr1G120170.3 , HORVU7Hr1G120170.9 , HORVU7Hr1G120170.13 , HORVU7Hr1G120170.11 , HORVU7Hr1G120170.15 , HORVU7Hr1G120170.20 , HORVU7Hr1G120170.28 , HORVU7Hr1G027670.11 , HORVU7Hr1G027670.10 , HORVU7Hr1G027670.13 , HORVU7Hr1G027670.12 , HORVU7Hr1G027670.15 , HORVU7Hr1G027670.14 , HORVU7Hr1G027670.5 , HORVU7Hr1G027670.7 , HORVU7Hr1G027670.6 , HORVU7Hr1G027670.3 , HORVU7Hr1G027670.2 , HORVU7Hr1G027670.9 , HORVU7Hr1G027670.8 , HORVU7Hr1G017310.1
Wheat TraesCS7A02G132700 , TraesCS7D02G132200 , TraesCS7B02G033300 , TraesCS7B02G033300
Populus -


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cDNA sequences
Sobic.010G056200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G107500 cyclin-dependent kinase, putative, expressed K08819: cyclin-dependent kinase 12/13
2 Sobic.004G113800 CAPIP1, putative, expressed K14496: abscisic acid receptor PYR/PYL family
3 Sobic.004G083700 expressed protein -
4 Sobic.007G052900 acetyltransferase, GNAT family, putative, expressed -
5 Sobic.003G324000 3-hydroxybutyryl-CoA dehydrogenase, putative, expressed K00074: paaH, hbd, fadB, 3-hydroxybutyryl-CoA dehydrogenase
6 Sobic.009G065100 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
7 Sobic.006G228500 coiled-coil domain-containing protein, putative, expressed K13115: coiled-coil domain-containing protein 130
8 Sobic.002G309800 casein kinase II subunit beta-4, putative, expressed K03115: casein kinase II subunit beta
9 Sobic.009G157200 OsFBL23 - F-box domain and LRR containing protein, expressed K13463: coronatine-insensitive protein 1
10 Sobic.007G108500 lipid phosphatase protein, putative, expressed K18693: DPP1, DPPL, diacylglycerol diphosphate phosphatase / phosphatidate phosphatase
11 Sobic.003G084700 - -
12 Sobic.007G205800 chaperone protein dnaJ 10, putative, expressed -
13 Sobic.004G205600 bromodomain domain containing protein, expressed -
14 Sobic.009G215800 OsFBX173 - F-box domain containing protein, expressed -
15 Sobic.005G187200 expressed protein -
16 Sobic.001G291100 tetraspanin family protein, putative, expressed -
17 Sobic.006G273200 "PKc_like super family, protein kjinases, catalytic domain"(PubMedID : 29491869)@protein kinase family protein, putative, expressed K14500: BR-signaling kinase
18 Sobic.009G198900 trehalose synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
19 Sobic.002G351900 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
20 Sobic.002G399100 zinc finger, RING-type, putative, expressed K15688: E3 ubiquitin-protein ligase MUL1


Gene co-expression network
sample Sobic010G056200 Sobic010G056200 Sobic001G107500 Sobic001G107500 Sobic010G056200--Sobic001G107500 Sobic004G113800 Sobic004G113800 Sobic010G056200--Sobic004G113800 Sobic004G083700 Sobic004G083700 Sobic010G056200--Sobic004G083700 Sobic007G052900 Sobic007G052900 Sobic010G056200--Sobic007G052900 Sobic003G324000 Sobic003G324000 Sobic010G056200--Sobic003G324000 Sobic009G065100 Sobic009G065100 Sobic010G056200--Sobic009G065100 Sobic006G228500 Sobic006G228500 Sobic010G056200--Sobic006G228500 Sobic002G309800 Sobic002G309800 Sobic010G056200--Sobic002G309800 Sobic009G157200 Sobic009G157200 Sobic010G056200--Sobic009G157200 Sobic002G320500 Sobic002G320500 Sobic001G107500--Sobic002G320500 Sobic006G133800 Sobic006G133800 Sobic001G107500--Sobic006G133800 Sobic002G157000 Sobic002G157000 Sobic001G107500--Sobic002G157000 Sobic001G107500--Sobic009G065100 Sobic001G090400 Sobic001G090400 Sobic001G107500--Sobic001G090400 Sobic001G107500--Sobic010G056200 Sobic001G497300 Sobic001G497300 Sobic001G107500--Sobic001G497300 Sobic007G104800 Sobic007G104800 Sobic001G107500--Sobic007G104800 Sobic004G205600 Sobic004G205600 Sobic001G107500--Sobic004G205600 Sobic004G113800--Sobic010G056200 Sobic004G113800--Sobic007G052900 Sobic009G140500 Sobic009G140500 Sobic004G113800--Sobic009G140500 Sobic001G368400 Sobic001G368400 Sobic004G113800--Sobic001G368400 Sobic001G118100 Sobic001G118100 Sobic004G113800--Sobic001G118100 Sobic009G034200 Sobic009G034200 Sobic004G113800--Sobic009G034200 Sobic004G241500 Sobic004G241500 Sobic004G113800--Sobic004G241500 Sobic004G174400 Sobic004G174400 Sobic004G113800--Sobic004G174400 Sobic004G113800--Sobic003G324000 Sobic004G083700--Sobic010G056200 Sobic004G083700--Sobic007G052900 Sobic007G108500 Sobic007G108500 Sobic004G083700--Sobic007G108500 Sobic003G309900 Sobic003G309900 Sobic004G083700--Sobic003G309900 Sobic004G083700--Sobic002G309800 Sobic010G280100 Sobic010G280100 Sobic004G083700--Sobic010G280100 Sobic001G291100 Sobic001G291100 Sobic004G083700--Sobic001G291100 Sobic002G122600 Sobic002G122600 Sobic004G083700--Sobic002G122600 Sobic009G198900 Sobic009G198900 Sobic004G083700--Sobic009G198900 Sobic007G052900--Sobic010G056200 Sobic007G052900--Sobic004G113800 Sobic002G209600 Sobic002G209600 Sobic007G052900--Sobic002G209600 Sobic010G005600 Sobic010G005600 Sobic007G052900--Sobic010G005600 Sobic007G052900--Sobic004G083700 Sobic007G054000 Sobic007G054000 Sobic007G052900--Sobic007G054000 Sobic007G052900--Sobic010G280100 Sobic006G180432 Sobic006G180432 Sobic007G052900--Sobic006G180432 Sobic007G052900--Sobic009G065100 Sobic003G324000--Sobic009G198900 Sobic003G324000--Sobic001G368400 Sobic005G187200 Sobic005G187200 Sobic003G324000--Sobic005G187200 Sobic003G324000--Sobic010G056200 Sobic001G479500 Sobic001G479500 Sobic003G324000--Sobic001G479500 Sobic003G324000--Sobic010G280100 Sobic007G205800 Sobic007G205800 Sobic003G324000--Sobic007G205800 Sobic009G087800 Sobic009G087800 Sobic003G324000--Sobic009G087800 Sobic003G258400 Sobic003G258400 Sobic003G324000--Sobic003G258400 Sobic009G065100--Sobic002G320500 Sobic009G065100--Sobic002G157000 Sobic008G173900 Sobic008G173900 Sobic009G065100--Sobic008G173900 Sobic009G215800 Sobic009G215800 Sobic009G065100--Sobic009G215800 Sobic004G084300 Sobic004G084300 Sobic009G065100--Sobic004G084300 Sobic002G144933 Sobic002G144933 Sobic009G065100--Sobic002G144933 Sobic009G065100--Sobic002G309800 Sobic009G065100--Sobic001G107500 Sobic003G197800 Sobic003G197800 Sobic009G065100--Sobic003G197800 Sobic004G164400 Sobic004G164400 Sobic006G228500--Sobic004G164400 Sobic004G121100 Sobic004G121100 Sobic006G228500--Sobic004G121100 Sobic006G228500--Sobic007G108500 Sobic001G318432 Sobic001G318432 Sobic006G228500--Sobic001G318432 Sobic006G228500--Sobic001G107500 Sobic001G298600 Sobic001G298600 Sobic006G228500--Sobic001G298600 Sobic006G228500--Sobic010G056200 Sobic006G228500--Sobic009G065100 Sobic002G031400 Sobic002G031400 Sobic006G228500--Sobic002G031400 Sobic002G309800--Sobic009G065100 Sobic001G253200 Sobic001G253200 Sobic002G309800--Sobic001G253200 Sobic002G309800--Sobic010G056200 Sobic007G054400 Sobic007G054400 Sobic002G309800--Sobic007G054400 Sobic002G309800--Sobic009G215800 Sobic005G079800 Sobic005G079800 Sobic002G309800--Sobic005G079800 Sobic009G070100 Sobic009G070100 Sobic002G309800--Sobic009G070100 Sobic007G078600 Sobic007G078600 Sobic002G309800--Sobic007G078600 Sobic004G087600 Sobic004G087600 Sobic002G309800--Sobic004G087600 Sobic009G157200--Sobic001G291100 Sobic009G157200--Sobic010G056200 Sobic003G084700 Sobic003G084700 Sobic009G157200--Sobic003G084700 Sobic001G281600 Sobic001G281600 Sobic009G157200--Sobic001G281600 Sobic003G018900 Sobic003G018900 Sobic009G157200--Sobic003G018900 Sobic003G250500 Sobic003G250500 Sobic009G157200--Sobic003G250500 Sobic006G273200 Sobic006G273200 Sobic009G157200--Sobic006G273200 Sobic007G078500 Sobic007G078500 Sobic009G157200--Sobic007G078500 Sobic009G157200--Sobic004G205600
Octagon: transcription factors


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