Gene annotation
Transcriptome id Sobic.003G324000.1
Synonym Sb03g037040
Functional annotation 3-hydroxybutyryl-CoA dehydrogenase, putative, expressed
UniProt C5XME6
Pfam PF03446 PF00725
Panther DB PTHR23309
NCBI CDD KOG2304; 3-hydroxyacyl-CoA dehydrogenase
KEGG Orthology K00074; paaH, hbd, fadB, 3-hydroxybutyryl-CoA dehydrogenase
Gene Ontology GO:0004616; phosphogluconate dehydrogenase (decarboxylating) activity GO:0016491oxidoreductase activity GO:0006631fatty acid metabolic process GO:00038573-hydroxyacyl-CoA dehydrogenase activity


Orthologs (automatic annotation)
TAIR AT3G15290 : 3-hydroxyacyl-CoA dehydrogenase family protein
RAP-DB (Rice) LOC_Os01g58380.1 : 3-hydroxybutyryl-CoA dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a039859
Brachypodium KQK10155
Barley -
Wheat TraesCS3D02G321200 , TraesCS3B02G357200 , TraesCS3B02G357200 , TraesCS3A02G327700
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G324000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G198900 trehalose synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
2 Sobic.001G368400 glutaredoxin, putative, expressed K17479: glutaredoxin domain-containing cysteine-rich protein 1
3 Sobic.005G187200 expressed protein -
4 Sobic.010G056200 WD-40 repeat family protein, putative, expressed -
5 Sobic.001G479500 dihydroflavonol-4-reductase, putative, expressed K15891: NAD+-dependent farnesol dehydrogenase
6 Sobic.010G280100 expressed protein -
7 Sobic.007G205800 chaperone protein dnaJ 10, putative, expressed -
8 Sobic.009G087800 seven in absentia protein family domain containing protein, expressed K08742: E3 ubiquitin-protein ligase SIAH2
9 Sobic.003G258400 splicing factor-related, putative, expressed -
10 Sobic.007G035600 MSP domain containing protein, putative, expressed -
11 Sobic.003G093600 methyltransferase, putative, expressed -
12 Sobic.007G078000 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
13 Sobic.009G002700 serpin domain containing protein, putative, expressed K13963: serpin B
14 Sobic.009G156000 arginyl-tRNA--protein transferase 1, putative, expressed K00685: arginyl-tRNA---protein transferase
15 Sobic.005G028400 "Ca ATPase, IIB type"(PubMedID : 22196357)@Autoihibited Ca2+ - ATPase 11(PubMedID : 26320239)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
16 Sobic.002G226000 leucine-rich repeat family protein, putative, expressed -
17 Sobic.007G023700 MA3 domain containing protein, expressed -
18 Sobic.009G022200 Putative splicing factor(PubMedID : 24356560)@splicing factor, arginine/serine-rich 7, putative, expressed K12896: splicing factor, arginine/serine-rich 7
19 Sobic.009G232700 splicing factor U2AF, putative, expressed K12836: splicing factor U2AF 35 kDa subunit
20 Sobic.007G130100 armadillo/beta-catenin repeat family protein, putative, expressed -


Gene co-expression network
sample Sobic003G324000 Sobic003G324000 Sobic009G198900 Sobic009G198900 Sobic003G324000--Sobic009G198900 Sobic001G368400 Sobic001G368400 Sobic003G324000--Sobic001G368400 Sobic005G187200 Sobic005G187200 Sobic003G324000--Sobic005G187200 Sobic010G056200 Sobic010G056200 Sobic003G324000--Sobic010G056200 Sobic001G479500 Sobic001G479500 Sobic003G324000--Sobic001G479500 Sobic010G280100 Sobic010G280100 Sobic003G324000--Sobic010G280100 Sobic007G205800 Sobic007G205800 Sobic003G324000--Sobic007G205800 Sobic009G087800 Sobic009G087800 Sobic003G324000--Sobic009G087800 Sobic003G258400 Sobic003G258400 Sobic003G324000--Sobic003G258400 Sobic009G198900--Sobic003G324000 Sobic009G198900--Sobic009G087800 Sobic009G198900--Sobic010G280100 Sobic009G198900--Sobic003G258400 Sobic009G198900--Sobic005G187200 Sobic007G054000 Sobic007G054000 Sobic009G198900--Sobic007G054000 Sobic009G110366 Sobic009G110366 Sobic009G198900--Sobic009G110366 Sobic009G198900--Sobic007G205800 Sobic006G196000 Sobic006G196000 Sobic009G198900--Sobic006G196000 Sobic001G368400--Sobic003G324000 Sobic007G037900 Sobic007G037900 Sobic001G368400--Sobic007G037900 Sobic001G368400--Sobic009G198900 Sobic003G107800 Sobic003G107800 Sobic001G368400--Sobic003G107800 Sobic001G368400--Sobic003G258400 Sobic007G035600 Sobic007G035600 Sobic001G368400--Sobic007G035600 Sobic001G368400--Sobic007G205800 Sobic004G113800 Sobic004G113800 Sobic001G368400--Sobic004G113800 Sobic005G028400 Sobic005G028400 Sobic001G368400--Sobic005G028400 Sobic010G263800 Sobic010G263800 Sobic005G187200--Sobic010G263800 Sobic004G271900 Sobic004G271900 Sobic005G187200--Sobic004G271900 Sobic005G187200--Sobic001G479500 Sobic004G256600 Sobic004G256600 Sobic005G187200--Sobic004G256600 Sobic005G187200--Sobic007G205800 Sobic007G011400 Sobic007G011400 Sobic005G187200--Sobic007G011400 Sobic002G077200 Sobic002G077200 Sobic005G187200--Sobic002G077200 Sobic009G134500 Sobic009G134500 Sobic005G187200--Sobic009G134500 Sobic001G194900 Sobic001G194900 Sobic005G187200--Sobic001G194900 Sobic001G107500 Sobic001G107500 Sobic010G056200--Sobic001G107500 Sobic010G056200--Sobic004G113800 Sobic004G083700 Sobic004G083700 Sobic010G056200--Sobic004G083700 Sobic007G052900 Sobic007G052900 Sobic010G056200--Sobic007G052900 Sobic010G056200--Sobic003G324000 Sobic009G065100 Sobic009G065100 Sobic010G056200--Sobic009G065100 Sobic006G228500 Sobic006G228500 Sobic010G056200--Sobic006G228500 Sobic002G309800 Sobic002G309800 Sobic010G056200--Sobic002G309800 Sobic009G157200 Sobic009G157200 Sobic010G056200--Sobic009G157200 Sobic003G057800 Sobic003G057800 Sobic001G479500--Sobic003G057800 Sobic005G130200 Sobic005G130200 Sobic001G479500--Sobic005G130200 Sobic010G248200 Sobic010G248200 Sobic001G479500--Sobic010G248200 Sobic008G161401 Sobic008G161401 Sobic001G479500--Sobic008G161401 Sobic009G156000 Sobic009G156000 Sobic001G479500--Sobic009G156000 Sobic001G543900 Sobic001G543900 Sobic001G479500--Sobic001G543900 Sobic001G479500--Sobic005G187200 Sobic002G283300 Sobic002G283300 Sobic001G479500--Sobic002G283300 Sobic004G212800 Sobic004G212800 Sobic001G479500--Sobic004G212800 Sobic010G280100--Sobic009G198900 Sobic004G119000 Sobic004G119000 Sobic010G280100--Sobic004G119000 Sobic010G280100--Sobic003G324000 Sobic010G280100--Sobic007G052900 Sobic008G136200 Sobic008G136200 Sobic010G280100--Sobic008G136200 Sobic010G280100--Sobic009G087800 Sobic010G280100--Sobic007G205800 Sobic010G280100--Sobic001G368400 Sobic006G273200 Sobic006G273200 Sobic010G280100--Sobic006G273200 Sobic007G205800--Sobic007G011400 Sobic007G205800--Sobic009G087800 Sobic007G205800--Sobic010G263800 Sobic008G034600 Sobic008G034600 Sobic007G205800--Sobic008G034600 Sobic007G205800--Sobic004G271900 Sobic009G022200 Sobic009G022200 Sobic007G205800--Sobic009G022200 Sobic003G093600 Sobic003G093600 Sobic007G205800--Sobic003G093600 Sobic007G205800--Sobic003G258400 Sobic007G205800--Sobic002G077200 Sobic009G087800--Sobic007G205800 Sobic009G087800--Sobic003G258400 Sobic009G087800--Sobic007G011400 Sobic009G087800--Sobic003G093600 Sobic009G087800--Sobic004G271900 Sobic009G087800--Sobic010G263800 Sobic010G026400 Sobic010G026400 Sobic009G087800--Sobic010G026400 Sobic001G424700 Sobic001G424700 Sobic009G087800--Sobic001G424700 Sobic009G087800--Sobic009G198900 Sobic003G258400--Sobic002G077200 Sobic003G258400--Sobic004G256600 Sobic003G258400--Sobic009G087800 Sobic009G231300 Sobic009G231300 Sobic003G258400--Sobic009G231300 Sobic009G180200 Sobic009G180200 Sobic003G258400--Sobic009G180200 Sobic003G258400--Sobic004G271900 Sobic003G258400--Sobic007G205800 Sobic003G258400--Sobic003G093600 Sobic003G258400--Sobic009G110366
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.