Gene annotation
Transcriptome id Sobic.007G130100.1
Synonym Sb07g020590
Functional annotation armadillo/beta-catenin repeat family protein, putative, expressed
UniProt A0A1Z5R9M1
Pfam PF00514 PF04564
Panther DB PTHR23315 PTHR23315:SF93
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0016567protein ubiquitination GO:0004842ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT5G62560 : RING/U-box superfamily protein with ARM repeat domain
RAP-DB (Rice) LOC_Os09g21740.1 : armadillo/beta-catenin repeat family protein, putative, expressed
MaizeGDB (Corn) Zm00025a013850 , Zm00025a006014 , Zm00025a046850
Brachypodium -
Barley HORVU7Hr1G046920.1 , HORVU7Hr1G046920.2
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.007G130100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G020401 - -
2 Sobic.004G315800 ZOS2-17 - C2H2 zinc finger protein, expressed -
3 Sobic.004G291800 - -
4 Sobic.003G324000 3-hydroxybutyryl-CoA dehydrogenase, putative, expressed K00074: paaH, hbd, fadB, 3-hydroxybutyryl-CoA dehydrogenase
5 Sobic.010G280100 expressed protein -
6 Sobic.009G198900 trehalose synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
7 Sobic.003G057800 rho termination factor, N-terminal domain containing protein, expressed -
8 Sobic.006G048775 - -
9 Sobic.009G110366 - -
10 Sobic.007G052900 acetyltransferase, GNAT family, putative, expressed -
11 Sobic.006G180432 - -
12 Sobic.001G368400 glutaredoxin, putative, expressed K17479: glutaredoxin domain-containing cysteine-rich protein 1
13 Sobic.001G479500 dihydroflavonol-4-reductase, putative, expressed K15891: NAD+-dependent farnesol dehydrogenase
14 Sobic.005G036700 expressed protein -
15 Sobic.009G197200 - -
16 Sobic.008G105900 - -
17 Sobic.005G028400 "Ca ATPase, IIB type"(PubMedID : 22196357)@Autoihibited Ca2+ - ATPase 11(PubMedID : 26320239)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
18 Sobic.007G158100 expressed protein -
19 Sobic.004G113800 CAPIP1, putative, expressed K14496: abscisic acid receptor PYR/PYL family
20 Sobic.003G357600 laccase precursor protein, putative, expressed K05909: laccase


Gene co-expression network
sample Sobic007G130100 Sobic007G130100 Sobic004G020401 Sobic004G020401 Sobic007G130100--Sobic004G020401 Sobic004G315800 Sobic004G315800 Sobic007G130100--Sobic004G315800 Sobic004G291800 Sobic004G291800 Sobic007G130100--Sobic004G291800 Sobic003G324000 Sobic003G324000 Sobic007G130100--Sobic003G324000 Sobic010G280100 Sobic010G280100 Sobic007G130100--Sobic010G280100 Sobic009G198900 Sobic009G198900 Sobic007G130100--Sobic009G198900 Sobic003G057800 Sobic003G057800 Sobic007G130100--Sobic003G057800 Sobic006G048775 Sobic006G048775 Sobic007G130100--Sobic006G048775 Sobic009G110366 Sobic009G110366 Sobic007G130100--Sobic009G110366 Sobic004G020401--Sobic004G291800 Sobic004G020401--Sobic009G110366 Sobic009G109450 Sobic009G109450 Sobic004G020401--Sobic009G109450 Sobic009G197200 Sobic009G197200 Sobic004G020401--Sobic009G197200 Sobic004G020401--Sobic003G057800 Sobic004G020401--Sobic007G130100 Sobic001G479500 Sobic001G479500 Sobic004G020401--Sobic001G479500 Sobic003G357500 Sobic003G357500 Sobic004G020401--Sobic003G357500 Sobic008G161401 Sobic008G161401 Sobic004G020401--Sobic008G161401 Sobic004G315800--Sobic007G130100 Sobic006G204200 Sobic006G204200 Sobic004G315800--Sobic006G204200 Sobic008G131700 Sobic008G131700 Sobic004G315800--Sobic008G131700 Sobic002G209600 Sobic002G209600 Sobic004G315800--Sobic002G209600 Sobic001G269300 Sobic001G269300 Sobic004G315800--Sobic001G269300 Sobic004G241500 Sobic004G241500 Sobic004G315800--Sobic004G241500 Sobic004G016500 Sobic004G016500 Sobic004G315800--Sobic004G016500 Sobic007G052900 Sobic007G052900 Sobic004G315800--Sobic007G052900 Sobic007G076700 Sobic007G076700 Sobic004G315800--Sobic007G076700 Sobic004G291800--Sobic004G020401 Sobic004G291800--Sobic009G197200 Sobic004G291800--Sobic009G110366 Sobic002G212800 Sobic002G212800 Sobic004G291800--Sobic002G212800 Sobic007G112900 Sobic007G112900 Sobic004G291800--Sobic007G112900 Sobic004G291800--Sobic009G109450 Sobic004G291800--Sobic007G130100 Sobic006G273100 Sobic006G273100 Sobic004G291800--Sobic006G273100 Sobic004G291800--Sobic003G057800 Sobic003G324000--Sobic009G198900 Sobic001G368400 Sobic001G368400 Sobic003G324000--Sobic001G368400 Sobic005G187200 Sobic005G187200 Sobic003G324000--Sobic005G187200 Sobic010G056200 Sobic010G056200 Sobic003G324000--Sobic010G056200 Sobic003G324000--Sobic001G479500 Sobic003G324000--Sobic010G280100 Sobic007G205800 Sobic007G205800 Sobic003G324000--Sobic007G205800 Sobic009G087800 Sobic009G087800 Sobic003G324000--Sobic009G087800 Sobic003G258400 Sobic003G258400 Sobic003G324000--Sobic003G258400 Sobic010G280100--Sobic009G198900 Sobic004G119000 Sobic004G119000 Sobic010G280100--Sobic004G119000 Sobic010G280100--Sobic003G324000 Sobic010G280100--Sobic007G052900 Sobic008G136200 Sobic008G136200 Sobic010G280100--Sobic008G136200 Sobic010G280100--Sobic009G087800 Sobic010G280100--Sobic007G205800 Sobic010G280100--Sobic001G368400 Sobic006G273200 Sobic006G273200 Sobic010G280100--Sobic006G273200 Sobic009G198900--Sobic003G324000 Sobic009G198900--Sobic009G087800 Sobic009G198900--Sobic010G280100 Sobic009G198900--Sobic003G258400 Sobic009G198900--Sobic005G187200 Sobic007G054000 Sobic007G054000 Sobic009G198900--Sobic007G054000 Sobic009G198900--Sobic009G110366 Sobic009G198900--Sobic007G205800 Sobic006G196000 Sobic006G196000 Sobic009G198900--Sobic006G196000 Sobic003G057800--Sobic001G479500 Sobic003G057800--Sobic003G357500 Sobic010G248200 Sobic010G248200 Sobic003G057800--Sobic010G248200 Sobic003G057800--Sobic008G161401 Sobic004G212800 Sobic004G212800 Sobic003G057800--Sobic004G212800 Sobic005G130200 Sobic005G130200 Sobic003G057800--Sobic005G130200 Sobic007G073400 Sobic007G073400 Sobic003G057800--Sobic007G073400 Sobic003G057800--Sobic004G016500 Sobic001G046600 Sobic001G046600 Sobic003G057800--Sobic001G046600 Sobic006G046000 Sobic006G046000 Sobic006G048775--Sobic006G046000 Sobic006G048775--Sobic001G479500 Sobic006G045901 Sobic006G045901 Sobic006G048775--Sobic006G045901 Sobic006G048775--Sobic003G057800 Sobic006G180432 Sobic006G180432 Sobic006G048775--Sobic006G180432 Sobic006G048775--Sobic009G110366 Sobic006G048775--Sobic002G212800 Sobic003G201750 Sobic003G201750 Sobic006G048775--Sobic003G201750 Sobic006G048775--Sobic005G130200 Sobic009G110366--Sobic007G073400 Sobic009G110366--Sobic004G020401 Sobic009G110366--Sobic009G109450 Sobic009G110366--Sobic003G258400 Sobic009G110366--Sobic006G196000 Sobic004G143700 Sobic004G143700 Sobic009G110366--Sobic004G143700 Sobic009G110366--Sobic004G291800 Sobic009G180200 Sobic009G180200 Sobic009G110366--Sobic009G180200 Sobic009G110366--Sobic009G198900
Octagon: transcription factors


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