Gene annotation
Transcriptome id Sobic.010G280100.1
Synonym Sb10g031310
Functional annotation expressed protein
UniProt C5Z2P0
Pfam -
Panther DB PTHR19282 PTHR19282:SF227
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G20230 : Tetraspanin family protein
RAP-DB (Rice) LOC_Os06g51480.1 : expressed protein
MaizeGDB (Corn) Zm00025a002033
Brachypodium KQK16555
Barley HORVU7Hr1G105880.1 , HORVU7Hr1G105880.2 , HORVU7Hr1G105880.4 , HORVU7Hr1G105880.3
Wheat TraesCS7B02G360600 , TraesCS7B02G360600 , TraesCS7B02G360400
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G280100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G198900 trehalose synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
2 Sobic.004G119000 OsFBK6 - F-box domain and kelch repeat containing protein, expressed -
3 Sobic.003G324000 3-hydroxybutyryl-CoA dehydrogenase, putative, expressed K00074: paaH, hbd, fadB, 3-hydroxybutyryl-CoA dehydrogenase
4 Sobic.007G052900 acetyltransferase, GNAT family, putative, expressed -
5 Sobic.008G136200 spotted leaf 11, putative, expressed -
6 Sobic.009G087800 seven in absentia protein family domain containing protein, expressed K08742: E3 ubiquitin-protein ligase SIAH2
7 Sobic.007G205800 chaperone protein dnaJ 10, putative, expressed -
8 Sobic.001G368400 glutaredoxin, putative, expressed K17479: glutaredoxin domain-containing cysteine-rich protein 1
9 Sobic.006G273200 "PKc_like super family, protein kjinases, catalytic domain"(PubMedID : 29491869)@protein kinase family protein, putative, expressed K14500: BR-signaling kinase
10 Sobic.010G056200 WD-40 repeat family protein, putative, expressed -
11 Sobic.004G083700 expressed protein -
12 Sobic.007G130100 armadillo/beta-catenin repeat family protein, putative, expressed -
13 Sobic.004G150400 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
14 Sobic.001G429300 STE_MEKK_ste11_MAP3K.12 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K13414: mitogen-activated protein kinase kinase kinase 1
15 Sobic.009G232700 splicing factor U2AF, putative, expressed K12836: splicing factor U2AF 35 kDa subunit
16 Sobic.001G497200 expressed protein -
17 Sobic.001G479300 EAP30/Vps36 family domain containing protein, expressed K12188: SNF8, ESCRT-II complex subunit VPS22
18 Sobic.007G035600 MSP domain containing protein, putative, expressed -
19 Sobic.001G291100 tetraspanin family protein, putative, expressed -
20 Sobic.004G020401 - -


Gene co-expression network
sample Sobic010G280100 Sobic010G280100 Sobic009G198900 Sobic009G198900 Sobic010G280100--Sobic009G198900 Sobic004G119000 Sobic004G119000 Sobic010G280100--Sobic004G119000 Sobic003G324000 Sobic003G324000 Sobic010G280100--Sobic003G324000 Sobic007G052900 Sobic007G052900 Sobic010G280100--Sobic007G052900 Sobic008G136200 Sobic008G136200 Sobic010G280100--Sobic008G136200 Sobic009G087800 Sobic009G087800 Sobic010G280100--Sobic009G087800 Sobic007G205800 Sobic007G205800 Sobic010G280100--Sobic007G205800 Sobic001G368400 Sobic001G368400 Sobic010G280100--Sobic001G368400 Sobic006G273200 Sobic006G273200 Sobic010G280100--Sobic006G273200 Sobic009G198900--Sobic003G324000 Sobic009G198900--Sobic009G087800 Sobic009G198900--Sobic010G280100 Sobic003G258400 Sobic003G258400 Sobic009G198900--Sobic003G258400 Sobic005G187200 Sobic005G187200 Sobic009G198900--Sobic005G187200 Sobic007G054000 Sobic007G054000 Sobic009G198900--Sobic007G054000 Sobic009G110366 Sobic009G110366 Sobic009G198900--Sobic009G110366 Sobic009G198900--Sobic007G205800 Sobic006G196000 Sobic006G196000 Sobic009G198900--Sobic006G196000 Sobic004G150400 Sobic004G150400 Sobic004G119000--Sobic004G150400 Sobic004G119000--Sobic010G280100 Sobic001G291100 Sobic001G291100 Sobic004G119000--Sobic001G291100 Sobic003G185200 Sobic003G185200 Sobic004G119000--Sobic003G185200 Sobic002G272800 Sobic002G272800 Sobic004G119000--Sobic002G272800 Sobic004G119000--Sobic009G087800 Sobic010G268300 Sobic010G268300 Sobic004G119000--Sobic010G268300 Sobic002G365100 Sobic002G365100 Sobic004G119000--Sobic002G365100 Sobic004G119000--Sobic007G205800 Sobic003G324000--Sobic009G198900 Sobic003G324000--Sobic001G368400 Sobic003G324000--Sobic005G187200 Sobic010G056200 Sobic010G056200 Sobic003G324000--Sobic010G056200 Sobic001G479500 Sobic001G479500 Sobic003G324000--Sobic001G479500 Sobic003G324000--Sobic010G280100 Sobic003G324000--Sobic007G205800 Sobic003G324000--Sobic009G087800 Sobic003G324000--Sobic003G258400 Sobic007G052900--Sobic010G056200 Sobic004G113800 Sobic004G113800 Sobic007G052900--Sobic004G113800 Sobic002G209600 Sobic002G209600 Sobic007G052900--Sobic002G209600 Sobic010G005600 Sobic010G005600 Sobic007G052900--Sobic010G005600 Sobic004G083700 Sobic004G083700 Sobic007G052900--Sobic004G083700 Sobic007G052900--Sobic007G054000 Sobic007G052900--Sobic010G280100 Sobic006G180432 Sobic006G180432 Sobic007G052900--Sobic006G180432 Sobic009G065100 Sobic009G065100 Sobic007G052900--Sobic009G065100 Sobic002G144933 Sobic002G144933 Sobic008G136200--Sobic002G144933 Sobic008G136200--Sobic007G205800 Sobic007G011400 Sobic007G011400 Sobic008G136200--Sobic007G011400 Sobic009G215800 Sobic009G215800 Sobic008G136200--Sobic009G215800 Sobic008G136200--Sobic009G065100 Sobic001G094000 Sobic001G094000 Sobic008G136200--Sobic001G094000 Sobic002G157000 Sobic002G157000 Sobic008G136200--Sobic002G157000 Sobic003G197800 Sobic003G197800 Sobic008G136200--Sobic003G197800 Sobic008G136200--Sobic009G087800 Sobic009G087800--Sobic007G205800 Sobic009G087800--Sobic003G258400 Sobic009G087800--Sobic007G011400 Sobic003G093600 Sobic003G093600 Sobic009G087800--Sobic003G093600 Sobic004G271900 Sobic004G271900 Sobic009G087800--Sobic004G271900 Sobic010G263800 Sobic010G263800 Sobic009G087800--Sobic010G263800 Sobic010G026400 Sobic010G026400 Sobic009G087800--Sobic010G026400 Sobic001G424700 Sobic001G424700 Sobic009G087800--Sobic001G424700 Sobic009G087800--Sobic009G198900 Sobic007G205800--Sobic007G011400 Sobic007G205800--Sobic009G087800 Sobic007G205800--Sobic010G263800 Sobic008G034600 Sobic008G034600 Sobic007G205800--Sobic008G034600 Sobic007G205800--Sobic004G271900 Sobic009G022200 Sobic009G022200 Sobic007G205800--Sobic009G022200 Sobic007G205800--Sobic003G093600 Sobic007G205800--Sobic003G258400 Sobic002G077200 Sobic002G077200 Sobic007G205800--Sobic002G077200 Sobic001G368400--Sobic003G324000 Sobic007G037900 Sobic007G037900 Sobic001G368400--Sobic007G037900 Sobic001G368400--Sobic009G198900 Sobic003G107800 Sobic003G107800 Sobic001G368400--Sobic003G107800 Sobic001G368400--Sobic003G258400 Sobic007G035600 Sobic007G035600 Sobic001G368400--Sobic007G035600 Sobic001G368400--Sobic007G205800 Sobic001G368400--Sobic004G113800 Sobic005G028400 Sobic005G028400 Sobic001G368400--Sobic005G028400 Sobic001G497300 Sobic001G497300 Sobic006G273200--Sobic001G497300 Sobic006G273200--Sobic009G065100 Sobic004G205600 Sobic004G205600 Sobic006G273200--Sobic004G205600 Sobic007G096000 Sobic007G096000 Sobic006G273200--Sobic007G096000 Sobic009G233300 Sobic009G233300 Sobic006G273200--Sobic009G233300 Sobic008G062000 Sobic008G062000 Sobic006G273200--Sobic008G062000 Sobic006G237400 Sobic006G237400 Sobic006G273200--Sobic006G237400 Sobic006G273200--Sobic007G205800 Sobic003G176600 Sobic003G176600 Sobic006G273200--Sobic003G176600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.