Gene annotation
Transcriptome id Sobic.008G136200.3,Sobic.008G136200.2,Sobic.008G136200.4
Synonym PUB12, AtPUB12, Sb08g018765
Functional annotation spotted leaf 11, putative, expressed
UniProt A0A1Z5R6H4 , A0A1Z5R6J5 , A0A1Z5R6I7
Pfam PF04564 PF00514
Panther DB PTHR23315 PTHR23315:SF122
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016567; protein ubiquitination GO:0004842ubiquitin-protein transferase activity GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G46510 : plant U-box 13
RAP-DB (Rice) LOC_Os12g38210.1 : spotted leaf 11, putative, expressed
MaizeGDB (Corn) Zm00025a004249 , Zm00025a025404
Brachypodium KQJ86254
Barley HORVU5Hr1G021280.1 , HORVU5Hr1G021270.1
Wheat TraesCS5D02G093700 , TraesCS5B02G087500 , TraesCS5A02G078400
Populus -


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cDNA sequences
Sobic.008G136200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G144933 - -
2 Sobic.007G205800 chaperone protein dnaJ 10, putative, expressed -
3 Sobic.007G011400 armadillo/beta-catenin repeat family protein, putative, expressed -
4 Sobic.009G215800 OsFBX173 - F-box domain containing protein, expressed -
5 Sobic.009G065100 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
6 Sobic.001G094000 expressed protein -
7 Sobic.002G157000 enhancer of polycomb, putative, expressed K11322: enhancer of polycomb-like protein
8 Sobic.003G197800 peptidyl-prolyl cis-trans isomerase, putative, expressed K12737: peptidyl-prolyl cis-trans isomerase SDCCAG10
9 Sobic.009G087800 seven in absentia protein family domain containing protein, expressed K08742: E3 ubiquitin-protein ligase SIAH2
10 Sobic.008G034600 protein kinase PKN/PRK1, effector, putative, expressed -
11 Sobic.008G063000 transcriptional corepressor SEUSS, putative, expressed -
12 Sobic.006G145000 disease resistance RPP13-like protein 1, putative, expressed -
13 Sobic.002G151600 R-interacting factor 1, putative, expressed -
14 Sobic.005G110544 - -
15 Sobic.010G263800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein(PubMedID : 28640841)@UPF0183 protein, putative, expressed -
16 Sobic.010G280100 expressed protein -
17 Sobic.001G360900 peptidyl-prolyl isomerase PASTICCINO1, putative, expressed -
18 Sobic.003G220200 protein kinase family protein, putative, expressed K17541: SCY1-like protein 2
19 Sobic.008G173900 "OsPPKL3(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659913)@serine/threonine-protein phosphatase BSL2, putative, expressed -
20 Sobic.006G246900 expressed protein -


Gene co-expression network
sample Sobic008G136200 Sobic008G136200 Sobic002G144933 Sobic002G144933 Sobic008G136200--Sobic002G144933 Sobic007G205800 Sobic007G205800 Sobic008G136200--Sobic007G205800 Sobic007G011400 Sobic007G011400 Sobic008G136200--Sobic007G011400 Sobic009G215800 Sobic009G215800 Sobic008G136200--Sobic009G215800 Sobic009G065100 Sobic009G065100 Sobic008G136200--Sobic009G065100 Sobic001G094000 Sobic001G094000 Sobic008G136200--Sobic001G094000 Sobic002G157000 Sobic002G157000 Sobic008G136200--Sobic002G157000 Sobic003G197800 Sobic003G197800 Sobic008G136200--Sobic003G197800 Sobic009G087800 Sobic009G087800 Sobic008G136200--Sobic009G087800 Sobic008G173900 Sobic008G173900 Sobic002G144933--Sobic008G173900 Sobic002G144933--Sobic002G157000 Sobic001G420200 Sobic001G420200 Sobic002G144933--Sobic001G420200 Sobic003G268300 Sobic003G268300 Sobic002G144933--Sobic003G268300 Sobic001G274200 Sobic001G274200 Sobic002G144933--Sobic001G274200 Sobic007G037900 Sobic007G037900 Sobic002G144933--Sobic007G037900 Sobic004G145500 Sobic004G145500 Sobic002G144933--Sobic004G145500 Sobic003G170100 Sobic003G170100 Sobic002G144933--Sobic003G170100 Sobic002G144933--Sobic009G065100 Sobic007G205800--Sobic007G011400 Sobic007G205800--Sobic009G087800 Sobic010G263800 Sobic010G263800 Sobic007G205800--Sobic010G263800 Sobic008G034600 Sobic008G034600 Sobic007G205800--Sobic008G034600 Sobic004G271900 Sobic004G271900 Sobic007G205800--Sobic004G271900 Sobic009G022200 Sobic009G022200 Sobic007G205800--Sobic009G022200 Sobic003G093600 Sobic003G093600 Sobic007G205800--Sobic003G093600 Sobic003G258400 Sobic003G258400 Sobic007G205800--Sobic003G258400 Sobic002G077200 Sobic002G077200 Sobic007G205800--Sobic002G077200 Sobic007G011400--Sobic001G094000 Sobic007G011400--Sobic007G205800 Sobic002G157300 Sobic002G157300 Sobic007G011400--Sobic002G157300 Sobic007G011400--Sobic010G263800 Sobic002G313300 Sobic002G313300 Sobic007G011400--Sobic002G313300 Sobic009G040700 Sobic009G040700 Sobic007G011400--Sobic009G040700 Sobic007G011400--Sobic002G157000 Sobic001G162300 Sobic001G162300 Sobic007G011400--Sobic001G162300 Sobic007G011400--Sobic008G034600 Sobic009G215800--Sobic009G065100 Sobic004G084300 Sobic004G084300 Sobic009G215800--Sobic004G084300 Sobic009G215800--Sobic008G136200 Sobic001G281600 Sobic001G281600 Sobic009G215800--Sobic001G281600 Sobic001G222500 Sobic001G222500 Sobic009G215800--Sobic001G222500 Sobic001G107500 Sobic001G107500 Sobic009G215800--Sobic001G107500 Sobic003G084700 Sobic003G084700 Sobic009G215800--Sobic003G084700 Sobic001G407200 Sobic001G407200 Sobic009G215800--Sobic001G407200 Sobic008G067600 Sobic008G067600 Sobic009G215800--Sobic008G067600 Sobic002G320500 Sobic002G320500 Sobic009G065100--Sobic002G320500 Sobic009G065100--Sobic002G157000 Sobic009G065100--Sobic008G173900 Sobic009G065100--Sobic009G215800 Sobic009G065100--Sobic004G084300 Sobic009G065100--Sobic002G144933 Sobic002G309800 Sobic002G309800 Sobic009G065100--Sobic002G309800 Sobic009G065100--Sobic001G107500 Sobic009G065100--Sobic003G197800 Sobic001G094000--Sobic007G011400 Sobic001G094000--Sobic009G040700 Sobic001G477800 Sobic001G477800 Sobic001G094000--Sobic001G477800 Sobic001G094000--Sobic002G157000 Sobic001G094000--Sobic003G268300 Sobic001G094000--Sobic002G157300 Sobic003G187400 Sobic003G187400 Sobic001G094000--Sobic003G187400 Sobic004G031700 Sobic004G031700 Sobic001G094000--Sobic004G031700 Sobic006G080300 Sobic006G080300 Sobic001G094000--Sobic006G080300 Sobic002G248400 Sobic002G248400 Sobic002G157000--Sobic002G248400 Sobic002G157000--Sobic002G320500 Sobic003G200200 Sobic003G200200 Sobic002G157000--Sobic003G200200 Sobic002G157000--Sobic001G420200 Sobic002G157000--Sobic008G173900 Sobic002G157000--Sobic003G268300 Sobic002G157000--Sobic001G162300 Sobic003G108700 Sobic003G108700 Sobic002G157000--Sobic003G108700 Sobic002G157000--Sobic001G094000 Sobic003G197800--Sobic002G157000 Sobic003G197800--Sobic002G320500 Sobic002G186000 Sobic002G186000 Sobic003G197800--Sobic002G186000 Sobic002G151600 Sobic002G151600 Sobic003G197800--Sobic002G151600 Sobic006G133800 Sobic006G133800 Sobic003G197800--Sobic006G133800 Sobic003G197800--Sobic009G065100 Sobic003G173950 Sobic003G173950 Sobic003G197800--Sobic003G173950 Sobic003G197800--Sobic002G248400 Sobic001G206100 Sobic001G206100 Sobic003G197800--Sobic001G206100 Sobic009G087800--Sobic007G205800 Sobic009G087800--Sobic003G258400 Sobic009G087800--Sobic007G011400 Sobic009G087800--Sobic003G093600 Sobic009G087800--Sobic004G271900 Sobic009G087800--Sobic010G263800 Sobic010G026400 Sobic010G026400 Sobic009G087800--Sobic010G026400 Sobic001G424700 Sobic001G424700 Sobic009G087800--Sobic001G424700 Sobic009G198900 Sobic009G198900 Sobic009G087800--Sobic009G198900
Octagon: transcription factors


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