Gene annotation
Transcriptome id Sobic.003G197800.1,Sobic.003G197800.2
Synonym Sb03g026040
Functional annotation peptidyl-prolyl cis-trans isomerase, putative, expressed
UniProt C5XNU7
Pfam PF00160
Panther DB PTHR11071 PTHR11071:SF152
NCBI CDD KOG0885; Peptidyl-prolyl cis-trans isomerase
KEGG Orthology K12737; peptidyl-prolyl cis-trans isomerase SDCCAG10
Gene Ontology GO:0006457; protein folding GO:0003755peptidyl-prolyl cis-trans isomerase activity GO:0000413protein peptidyl-prolyl isomerization


Orthologs (automatic annotation)
TAIR AT4G33060 : Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
RAP-DB (Rice) LOC_Os01g40050.2 : peptidyl-prolyl cis-trans isomerase, putative, expressed
MaizeGDB (Corn) Zm00025a050170 , Zm00025a028500
Brachypodium KQK08443 , PNT72257
Barley HORVU3Hr1G050400.4 , HORVU3Hr1G050400.5 , HORVU3Hr1G050400.6 , HORVU3Hr1G050400.7 , HORVU3Hr1G050400.1 , HORVU3Hr1G050400.2 , HORVU3Hr1G050400.3
Wheat TraesCS3D02G211900 , TraesCS3A02G209000 , TraesCS3B02G239300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G157000 enhancer of polycomb, putative, expressed K11322: enhancer of polycomb-like protein
2 Sobic.002G320500 MYB family transcription factor, putative, expressed -
3 Sobic.002G186000 CD2-binding protein-related, putative, expressed K13099: CD2BP2, CD2 antigen cytoplasmic tail-binding protein 2
4 Sobic.002G151600 R-interacting factor 1, putative, expressed -
5 Sobic.006G133800 myb-like DNA-binding domain containing protein, expressed -
6 Sobic.009G065100 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
7 Sobic.003G173950 - -
8 Sobic.002G248400 ENT domain containing protein, expressed -
9 Sobic.001G206100 expressed protein -
10 Sobic.006G013500 hydrolase/ zinc ion binding protein, putative, expressed K15442: TAD3, tRNA-specific adenosine deaminase 3
11 Sobic.007G054400 FAR1 family protein, expressed -
12 Sobic.002G144933 - -
13 Sobic.003G220200 protein kinase family protein, putative, expressed K17541: SCY1-like protein 2
14 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
15 Sobic.001G420200 RNA recognition motif containing protein, putative, expressed K11093: U1 small nuclear ribonucleoprotein 70kDa
16 Sobic.001G107500 cyclin-dependent kinase, putative, expressed K08819: cyclin-dependent kinase 12/13
17 Sobic.008G173900 "OsPPKL3(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659913)@serine/threonine-protein phosphatase BSL2, putative, expressed -
18 Sobic.003G241200 nucampholin, putative, expressed K13100: pre-mRNA-splicing factor CWC22
19 Sobic.001G375700 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12890: SFRS1, ASF, splicing factor, arginine/serine-rich 1
20 Sobic.001G094000 expressed protein -


Gene co-expression network
sample Sobic003G197800 Sobic003G197800 Sobic002G157000 Sobic002G157000 Sobic003G197800--Sobic002G157000 Sobic002G320500 Sobic002G320500 Sobic003G197800--Sobic002G320500 Sobic002G186000 Sobic002G186000 Sobic003G197800--Sobic002G186000 Sobic002G151600 Sobic002G151600 Sobic003G197800--Sobic002G151600 Sobic006G133800 Sobic006G133800 Sobic003G197800--Sobic006G133800 Sobic009G065100 Sobic009G065100 Sobic003G197800--Sobic009G065100 Sobic003G173950 Sobic003G173950 Sobic003G197800--Sobic003G173950 Sobic002G248400 Sobic002G248400 Sobic003G197800--Sobic002G248400 Sobic001G206100 Sobic001G206100 Sobic003G197800--Sobic001G206100 Sobic002G157000--Sobic002G248400 Sobic002G157000--Sobic002G320500 Sobic003G200200 Sobic003G200200 Sobic002G157000--Sobic003G200200 Sobic001G420200 Sobic001G420200 Sobic002G157000--Sobic001G420200 Sobic008G173900 Sobic008G173900 Sobic002G157000--Sobic008G173900 Sobic003G268300 Sobic003G268300 Sobic002G157000--Sobic003G268300 Sobic001G162300 Sobic001G162300 Sobic002G157000--Sobic001G162300 Sobic003G108700 Sobic003G108700 Sobic002G157000--Sobic003G108700 Sobic001G094000 Sobic001G094000 Sobic002G157000--Sobic001G094000 Sobic002G320500--Sobic002G157000 Sobic002G320500--Sobic002G248400 Sobic002G320500--Sobic009G065100 Sobic009G210500 Sobic009G210500 Sobic002G320500--Sobic009G210500 Sobic002G320500--Sobic006G133800 Sobic001G107500 Sobic001G107500 Sobic002G320500--Sobic001G107500 Sobic006G032400 Sobic006G032400 Sobic002G320500--Sobic006G032400 Sobic009G000500 Sobic009G000500 Sobic002G320500--Sobic009G000500 Sobic001G090400 Sobic001G090400 Sobic002G320500--Sobic001G090400 Sobic002G186000--Sobic003G197800 Sobic002G186000--Sobic002G157000 Sobic002G186000--Sobic002G248400 Sobic002G186000--Sobic001G094000 Sobic002G186000--Sobic003G200200 Sobic007G011400 Sobic007G011400 Sobic002G186000--Sobic007G011400 Sobic002G058300 Sobic002G058300 Sobic002G186000--Sobic002G058300 Sobic002G186000--Sobic001G162300 Sobic003G220200 Sobic003G220200 Sobic002G186000--Sobic003G220200 Sobic002G151600--Sobic002G157000 Sobic002G151600--Sobic003G197800 Sobic002G151600--Sobic002G320500 Sobic002G313300 Sobic002G313300 Sobic002G151600--Sobic002G313300 Sobic002G151600--Sobic009G000500 Sobic002G151600--Sobic001G094000 Sobic002G151600--Sobic009G065100 Sobic002G151600--Sobic002G248400 Sobic001G303675 Sobic001G303675 Sobic002G151600--Sobic001G303675 Sobic006G133800--Sobic002G320500 Sobic006G133800--Sobic002G157000 Sobic006G133800--Sobic009G000500 Sobic006G133800--Sobic001G107500 Sobic006G133800--Sobic002G248400 Sobic006G133800--Sobic003G197800 Sobic006G133800--Sobic008G173900 Sobic006G133800--Sobic009G210500 Sobic006G133800--Sobic009G065100 Sobic009G065100--Sobic002G320500 Sobic009G065100--Sobic002G157000 Sobic009G065100--Sobic008G173900 Sobic009G215800 Sobic009G215800 Sobic009G065100--Sobic009G215800 Sobic004G084300 Sobic004G084300 Sobic009G065100--Sobic004G084300 Sobic002G144933 Sobic002G144933 Sobic009G065100--Sobic002G144933 Sobic002G309800 Sobic002G309800 Sobic009G065100--Sobic002G309800 Sobic009G065100--Sobic001G107500 Sobic009G065100--Sobic003G197800 Sobic001G356500 Sobic001G356500 Sobic003G173950--Sobic001G356500 Sobic003G241200 Sobic003G241200 Sobic003G173950--Sobic003G241200 Sobic003G173950--Sobic003G197800 Sobic003G173950--Sobic002G320500 Sobic003G173950--Sobic002G157000 Sobic007G065400 Sobic007G065400 Sobic003G173950--Sobic007G065400 Sobic003G173950--Sobic004G084300 Sobic009G102500 Sobic009G102500 Sobic003G173950--Sobic009G102500 Sobic003G173950--Sobic001G206100 Sobic002G248400--Sobic002G157000 Sobic002G248400--Sobic003G108700 Sobic002G248400--Sobic003G268300 Sobic002G248400--Sobic001G420200 Sobic002G248400--Sobic002G320500 Sobic002G248400--Sobic003G200200 Sobic002G248400--Sobic006G032400 Sobic002G248400--Sobic001G090400 Sobic004G257400 Sobic004G257400 Sobic002G248400--Sobic004G257400 Sobic001G257300 Sobic001G257300 Sobic001G206100--Sobic001G257300 Sobic006G013500 Sobic006G013500 Sobic001G206100--Sobic006G013500 Sobic001G206100--Sobic002G320500 Sobic006G080300 Sobic006G080300 Sobic001G206100--Sobic006G080300 Sobic001G206100--Sobic002G157000 Sobic001G206100--Sobic009G000500 Sobic004G213000 Sobic004G213000 Sobic001G206100--Sobic004G213000 Sobic001G206100--Sobic001G356500 Sobic002G161000 Sobic002G161000 Sobic001G206100--Sobic002G161000
Octagon: transcription factors


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