Gene annotation
Transcriptome id Sobic.006G133800.1
Synonym Sb06g021360
Functional annotation myb-like DNA-binding domain containing protein, expressed
UniProt A0A1B6PLU4
Pfam PF12579
Panther DB PTHR14000
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G07565 : Protein of unknown function (DUF3755)
RAP-DB (Rice) LOC_Os04g41830.1 : myb-like DNA-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a010832
Brachypodium KQJ83359 , PNT61377
Barley HORVU2Hr1G085550.1 , HORVU2Hr1G085550.3 , HORVU2Hr1G085550.2
Wheat TraesCS2D02G350300 , TraesCS2B02G370300 , TraesCS2A02G352300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G320500 MYB family transcription factor, putative, expressed -
2 Sobic.002G157000 enhancer of polycomb, putative, expressed K11322: enhancer of polycomb-like protein
3 Sobic.009G000500 pex14, putative, expressed K13343: peroxin-14
4 Sobic.001G107500 cyclin-dependent kinase, putative, expressed K08819: cyclin-dependent kinase 12/13
5 Sobic.002G248400 ENT domain containing protein, expressed -
6 Sobic.003G197800 peptidyl-prolyl cis-trans isomerase, putative, expressed K12737: peptidyl-prolyl cis-trans isomerase SDCCAG10
7 Sobic.008G173900 "OsPPKL3(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659913)@serine/threonine-protein phosphatase BSL2, putative, expressed -
8 Sobic.009G210500 expressed protein -
9 Sobic.009G065100 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
10 Sobic.001G162300 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
11 Sobic.001G206100 expressed protein -
12 Sobic.003G445400 vacuolar fusion protein MON1 homolog A, putative, expressed -
13 Sobic.003G397800 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
14 Sobic.001G420200 RNA recognition motif containing protein, putative, expressed K11093: U1 small nuclear ribonucleoprotein 70kDa
15 Sobic.001G090400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
16 Sobic.004G205600 bromodomain domain containing protein, expressed -
17 Sobic.003G268300 surp module family protein, putative, expressed -
18 Sobic.005G021500 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
19 Sobic.002G151600 R-interacting factor 1, putative, expressed -
20 Sobic.006G128900 cyclin-dependent kinase G-2, putative, expressed K08818: cell division cycle 2-like


Gene co-expression network
sample Sobic006G133800 Sobic006G133800 Sobic002G320500 Sobic002G320500 Sobic006G133800--Sobic002G320500 Sobic002G157000 Sobic002G157000 Sobic006G133800--Sobic002G157000 Sobic009G000500 Sobic009G000500 Sobic006G133800--Sobic009G000500 Sobic001G107500 Sobic001G107500 Sobic006G133800--Sobic001G107500 Sobic002G248400 Sobic002G248400 Sobic006G133800--Sobic002G248400 Sobic003G197800 Sobic003G197800 Sobic006G133800--Sobic003G197800 Sobic008G173900 Sobic008G173900 Sobic006G133800--Sobic008G173900 Sobic009G210500 Sobic009G210500 Sobic006G133800--Sobic009G210500 Sobic009G065100 Sobic009G065100 Sobic006G133800--Sobic009G065100 Sobic002G320500--Sobic002G157000 Sobic002G320500--Sobic002G248400 Sobic002G320500--Sobic009G065100 Sobic002G320500--Sobic009G210500 Sobic002G320500--Sobic006G133800 Sobic002G320500--Sobic001G107500 Sobic006G032400 Sobic006G032400 Sobic002G320500--Sobic006G032400 Sobic002G320500--Sobic009G000500 Sobic001G090400 Sobic001G090400 Sobic002G320500--Sobic001G090400 Sobic002G157000--Sobic002G248400 Sobic002G157000--Sobic002G320500 Sobic003G200200 Sobic003G200200 Sobic002G157000--Sobic003G200200 Sobic001G420200 Sobic001G420200 Sobic002G157000--Sobic001G420200 Sobic002G157000--Sobic008G173900 Sobic003G268300 Sobic003G268300 Sobic002G157000--Sobic003G268300 Sobic001G162300 Sobic001G162300 Sobic002G157000--Sobic001G162300 Sobic003G108700 Sobic003G108700 Sobic002G157000--Sobic003G108700 Sobic001G094000 Sobic001G094000 Sobic002G157000--Sobic001G094000 Sobic004G031700 Sobic004G031700 Sobic009G000500--Sobic004G031700 Sobic003G445400 Sobic003G445400 Sobic009G000500--Sobic003G445400 Sobic009G000500--Sobic002G320500 Sobic006G128900 Sobic006G128900 Sobic009G000500--Sobic006G128900 Sobic009G000500--Sobic006G133800 Sobic009G000500--Sobic001G090400 Sobic003G307000 Sobic003G307000 Sobic009G000500--Sobic003G307000 Sobic009G000500--Sobic008G173900 Sobic001G206100 Sobic001G206100 Sobic009G000500--Sobic001G206100 Sobic001G107500--Sobic002G320500 Sobic001G107500--Sobic006G133800 Sobic001G107500--Sobic002G157000 Sobic001G107500--Sobic009G065100 Sobic001G107500--Sobic001G090400 Sobic010G056200 Sobic010G056200 Sobic001G107500--Sobic010G056200 Sobic001G497300 Sobic001G497300 Sobic001G107500--Sobic001G497300 Sobic007G104800 Sobic007G104800 Sobic001G107500--Sobic007G104800 Sobic004G205600 Sobic004G205600 Sobic001G107500--Sobic004G205600 Sobic002G248400--Sobic002G157000 Sobic002G248400--Sobic003G108700 Sobic002G248400--Sobic003G268300 Sobic002G248400--Sobic001G420200 Sobic002G248400--Sobic002G320500 Sobic002G248400--Sobic003G200200 Sobic002G248400--Sobic006G032400 Sobic002G248400--Sobic001G090400 Sobic004G257400 Sobic004G257400 Sobic002G248400--Sobic004G257400 Sobic003G197800--Sobic002G157000 Sobic003G197800--Sobic002G320500 Sobic002G186000 Sobic002G186000 Sobic003G197800--Sobic002G186000 Sobic002G151600 Sobic002G151600 Sobic003G197800--Sobic002G151600 Sobic003G197800--Sobic006G133800 Sobic003G197800--Sobic009G065100 Sobic003G173950 Sobic003G173950 Sobic003G197800--Sobic003G173950 Sobic003G197800--Sobic002G248400 Sobic003G197800--Sobic001G206100 Sobic008G173900--Sobic002G157000 Sobic002G144933 Sobic002G144933 Sobic008G173900--Sobic002G144933 Sobic008G173900--Sobic001G420200 Sobic008G173900--Sobic003G268300 Sobic008G054500 Sobic008G054500 Sobic008G173900--Sobic008G054500 Sobic008G173900--Sobic003G200200 Sobic001G274200 Sobic001G274200 Sobic008G173900--Sobic001G274200 Sobic001G413500 Sobic001G413500 Sobic008G173900--Sobic001G413500 Sobic007G096600 Sobic007G096600 Sobic008G173900--Sobic007G096600 Sobic009G210500--Sobic002G320500 Sobic007G065400 Sobic007G065400 Sobic009G210500--Sobic007G065400 Sobic009G210500--Sobic002G157000 Sobic009G210500--Sobic006G032400 Sobic009G210500--Sobic003G268300 Sobic001G407200 Sobic001G407200 Sobic009G210500--Sobic001G407200 Sobic007G167500 Sobic007G167500 Sobic009G210500--Sobic007G167500 Sobic009G210500--Sobic001G090400 Sobic004G145500 Sobic004G145500 Sobic009G210500--Sobic004G145500 Sobic009G065100--Sobic002G320500 Sobic009G065100--Sobic002G157000 Sobic009G065100--Sobic008G173900 Sobic009G215800 Sobic009G215800 Sobic009G065100--Sobic009G215800 Sobic004G084300 Sobic004G084300 Sobic009G065100--Sobic004G084300 Sobic009G065100--Sobic002G144933 Sobic002G309800 Sobic002G309800 Sobic009G065100--Sobic002G309800 Sobic009G065100--Sobic001G107500 Sobic009G065100--Sobic003G197800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.