Gene annotation
Transcriptome id Sobic.009G065100.3,Sobic.009G065100.1,Sobic.009G065100.4,Sobic.009G065100.2
Synonym ATSRL1, Sb09g005440
Functional annotation splicing factor, putative, expressed
UniProt A0A1B6P710 , C5Z170
Pfam PF12871 PF03371
Panther DB PTHR23142 PTHR23142:SF3
NCBI CDD KOG2888; Putative RNA binding protein
KEGG Orthology K12850; pre-mRNA-splicing factor 38B
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G37370 : PRP38 family protein
RAP-DB (Rice) LOC_Os05g08600.1,LOC_Os05g08600.2 : splicing factor, putative, expressed
MaizeGDB (Corn) Zm00025a043033
Brachypodium KQK07224
Barley HORVU1Hr1G025660.21 , HORVU1Hr1G025660.20 , HORVU1Hr1G025660.22 , HORVU1Hr1G025660.8 , HORVU1Hr1G025660.9 , HORVU1Hr1G025660.6 , HORVU1Hr1G025660.7 , HORVU1Hr1G025660.4 , HORVU1Hr1G025660.5 , HORVU1Hr1G025660.2 , HORVU1Hr1G025660.1 , HORVU1Hr1G025660.14 , HORVU1Hr1G025660.15 , HORVU1Hr1G025660.16 , HORVU1Hr1G025660.17 , HORVU1Hr1G025660.10 , HORVU1Hr1G025660.11 , HORVU1Hr1G025660.12 , HORVU1Hr1G025660.13 , HORVU1Hr1G025660.18
Wheat TraesCS1D02G119600 , TraesCS1A02G118700 , TraesCS1B02G138200
Populus -


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cDNA sequences
Sobic.009G065100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G320500 MYB family transcription factor, putative, expressed -
2 Sobic.002G157000 enhancer of polycomb, putative, expressed K11322: enhancer of polycomb-like protein
3 Sobic.008G173900 "OsPPKL3(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659913)@serine/threonine-protein phosphatase BSL2, putative, expressed -
4 Sobic.009G215800 OsFBX173 - F-box domain containing protein, expressed -
5 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
6 Sobic.002G144933 - -
7 Sobic.002G309800 casein kinase II subunit beta-4, putative, expressed K03115: casein kinase II subunit beta
8 Sobic.001G107500 cyclin-dependent kinase, putative, expressed K08819: cyclin-dependent kinase 12/13
9 Sobic.003G197800 peptidyl-prolyl cis-trans isomerase, putative, expressed K12737: peptidyl-prolyl cis-trans isomerase SDCCAG10
10 Sobic.002G248400 ENT domain containing protein, expressed -
11 Sobic.009G000500 pex14, putative, expressed K13343: peroxin-14
12 Sobic.004G205600 bromodomain domain containing protein, expressed -
13 Sobic.006G128900 cyclin-dependent kinase G-2, putative, expressed K08818: cell division cycle 2-like
14 Sobic.006G133800 myb-like DNA-binding domain containing protein, expressed -
15 Sobic.008G067600 protein kinase PKN/PRK1, effector, putative, expressed -
16 Sobic.001G420200 RNA recognition motif containing protein, putative, expressed K11093: U1 small nuclear ribonucleoprotein 70kDa
17 Sobic.005G021500 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
18 Sobic.009G210500 expressed protein -
19 Sobic.001G497300 protein kinase domain containing protein, expressed -
20 Sobic.004G145500 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -


Gene co-expression network
sample Sobic009G065100 Sobic009G065100 Sobic002G320500 Sobic002G320500 Sobic009G065100--Sobic002G320500 Sobic002G157000 Sobic002G157000 Sobic009G065100--Sobic002G157000 Sobic008G173900 Sobic008G173900 Sobic009G065100--Sobic008G173900 Sobic009G215800 Sobic009G215800 Sobic009G065100--Sobic009G215800 Sobic004G084300 Sobic004G084300 Sobic009G065100--Sobic004G084300 Sobic002G144933 Sobic002G144933 Sobic009G065100--Sobic002G144933 Sobic002G309800 Sobic002G309800 Sobic009G065100--Sobic002G309800 Sobic001G107500 Sobic001G107500 Sobic009G065100--Sobic001G107500 Sobic003G197800 Sobic003G197800 Sobic009G065100--Sobic003G197800 Sobic002G320500--Sobic002G157000 Sobic002G248400 Sobic002G248400 Sobic002G320500--Sobic002G248400 Sobic002G320500--Sobic009G065100 Sobic009G210500 Sobic009G210500 Sobic002G320500--Sobic009G210500 Sobic006G133800 Sobic006G133800 Sobic002G320500--Sobic006G133800 Sobic002G320500--Sobic001G107500 Sobic006G032400 Sobic006G032400 Sobic002G320500--Sobic006G032400 Sobic009G000500 Sobic009G000500 Sobic002G320500--Sobic009G000500 Sobic001G090400 Sobic001G090400 Sobic002G320500--Sobic001G090400 Sobic002G157000--Sobic002G248400 Sobic002G157000--Sobic002G320500 Sobic003G200200 Sobic003G200200 Sobic002G157000--Sobic003G200200 Sobic001G420200 Sobic001G420200 Sobic002G157000--Sobic001G420200 Sobic002G157000--Sobic008G173900 Sobic003G268300 Sobic003G268300 Sobic002G157000--Sobic003G268300 Sobic001G162300 Sobic001G162300 Sobic002G157000--Sobic001G162300 Sobic003G108700 Sobic003G108700 Sobic002G157000--Sobic003G108700 Sobic001G094000 Sobic001G094000 Sobic002G157000--Sobic001G094000 Sobic008G173900--Sobic002G157000 Sobic008G173900--Sobic002G144933 Sobic008G173900--Sobic001G420200 Sobic008G173900--Sobic003G268300 Sobic008G054500 Sobic008G054500 Sobic008G173900--Sobic008G054500 Sobic008G173900--Sobic003G200200 Sobic001G274200 Sobic001G274200 Sobic008G173900--Sobic001G274200 Sobic001G413500 Sobic001G413500 Sobic008G173900--Sobic001G413500 Sobic007G096600 Sobic007G096600 Sobic008G173900--Sobic007G096600 Sobic009G215800--Sobic009G065100 Sobic009G215800--Sobic004G084300 Sobic008G136200 Sobic008G136200 Sobic009G215800--Sobic008G136200 Sobic001G281600 Sobic001G281600 Sobic009G215800--Sobic001G281600 Sobic001G222500 Sobic001G222500 Sobic009G215800--Sobic001G222500 Sobic009G215800--Sobic001G107500 Sobic003G084700 Sobic003G084700 Sobic009G215800--Sobic003G084700 Sobic001G407200 Sobic001G407200 Sobic009G215800--Sobic001G407200 Sobic008G067600 Sobic008G067600 Sobic009G215800--Sobic008G067600 Sobic008G047800 Sobic008G047800 Sobic004G084300--Sobic008G047800 Sobic004G084300--Sobic001G222500 Sobic003G241200 Sobic003G241200 Sobic004G084300--Sobic003G241200 Sobic002G006900 Sobic002G006900 Sobic004G084300--Sobic002G006900 Sobic010G236400 Sobic010G236400 Sobic004G084300--Sobic010G236400 Sobic009G040600 Sobic009G040600 Sobic004G084300--Sobic009G040600 Sobic004G084300--Sobic008G067600 Sobic004G084300--Sobic009G065100 Sobic007G132400 Sobic007G132400 Sobic004G084300--Sobic007G132400 Sobic002G144933--Sobic008G173900 Sobic002G144933--Sobic002G157000 Sobic002G144933--Sobic001G420200 Sobic002G144933--Sobic003G268300 Sobic002G144933--Sobic001G274200 Sobic007G037900 Sobic007G037900 Sobic002G144933--Sobic007G037900 Sobic004G145500 Sobic004G145500 Sobic002G144933--Sobic004G145500 Sobic003G170100 Sobic003G170100 Sobic002G144933--Sobic003G170100 Sobic002G144933--Sobic009G065100 Sobic002G309800--Sobic009G065100 Sobic001G253200 Sobic001G253200 Sobic002G309800--Sobic001G253200 Sobic010G056200 Sobic010G056200 Sobic002G309800--Sobic010G056200 Sobic007G054400 Sobic007G054400 Sobic002G309800--Sobic007G054400 Sobic002G309800--Sobic009G215800 Sobic005G079800 Sobic005G079800 Sobic002G309800--Sobic005G079800 Sobic009G070100 Sobic009G070100 Sobic002G309800--Sobic009G070100 Sobic007G078600 Sobic007G078600 Sobic002G309800--Sobic007G078600 Sobic004G087600 Sobic004G087600 Sobic002G309800--Sobic004G087600 Sobic001G107500--Sobic002G320500 Sobic001G107500--Sobic006G133800 Sobic001G107500--Sobic002G157000 Sobic001G107500--Sobic009G065100 Sobic001G107500--Sobic001G090400 Sobic001G107500--Sobic010G056200 Sobic001G497300 Sobic001G497300 Sobic001G107500--Sobic001G497300 Sobic007G104800 Sobic007G104800 Sobic001G107500--Sobic007G104800 Sobic004G205600 Sobic004G205600 Sobic001G107500--Sobic004G205600 Sobic003G197800--Sobic002G157000 Sobic003G197800--Sobic002G320500 Sobic002G186000 Sobic002G186000 Sobic003G197800--Sobic002G186000 Sobic002G151600 Sobic002G151600 Sobic003G197800--Sobic002G151600 Sobic003G197800--Sobic006G133800 Sobic003G197800--Sobic009G065100 Sobic003G173950 Sobic003G173950 Sobic003G197800--Sobic003G173950 Sobic003G197800--Sobic002G248400 Sobic001G206100 Sobic001G206100 Sobic003G197800--Sobic001G206100
Octagon: transcription factors


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