Gene annotation
Transcriptome id Sobic.001G107500.1
Synonym 1, Sb01g009600, CDKC
Functional annotation cyclin-dependent kinase, putative, expressed
UniProt C5WM29
Pfam PF00069
Panther DB PTHR24056 PTHR24056:SF187
NCBI CDD -
KEGG Orthology K08819; cyclin-dependent kinase 12/13
Gene Ontology GO:0006468; protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT5G10270 : cyclin-dependent kinase C;1
RAP-DB (Rice) LOC_Os01g72790.1 : cyclin-dependent kinase, putative, expressed
MaizeGDB (Corn) Zm00025a016901 , Zm00025a043816 , Zm00025a007958
Brachypodium KQK11630 , KQK06503
Barley HORVU1Hr1G056390.1 , HORVU1Hr1G056390.2 , HORVU1Hr1G056380.3 , HORVU1Hr1G056380.2 , HORVU1Hr1G056380.1 , HORVU3Hr1G110150.5 , HORVU3Hr1G110150.4 , HORVU3Hr1G110150.7 , HORVU3Hr1G110150.6 , HORVU3Hr1G110150.1 , HORVU3Hr1G110150.3 , HORVU3Hr1G110150.2 , HORVU3Hr1G110150.8
Wheat TraesCS3A02G498200 , TraesCS3A02G498200 , TraesCS1B02G254800 , TraesCS1D02G243300 , TraesCS3B02G561200 , TraesCS3B02G561200 , TraesCSU02G058100 , TraesCS1A02G243300
Populus -


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cDNA sequences
Sobic.001G107500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G320500 MYB family transcription factor, putative, expressed -
2 Sobic.006G133800 myb-like DNA-binding domain containing protein, expressed -
3 Sobic.002G157000 enhancer of polycomb, putative, expressed K11322: enhancer of polycomb-like protein
4 Sobic.009G065100 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
5 Sobic.001G090400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
6 Sobic.010G056200 WD-40 repeat family protein, putative, expressed -
7 Sobic.001G497300 protein kinase domain containing protein, expressed -
8 Sobic.007G104800 expressed protein -
9 Sobic.004G205600 bromodomain domain containing protein, expressed -
10 Sobic.009G205200 OsFBX170 - F-box domain containing protein, expressed -
11 Sobic.003G220200 protein kinase family protein, putative, expressed K17541: SCY1-like protein 2
12 Sobic.005G023900 expressed protein -
13 Sobic.001G251700 OsPP2Ac-4 - Phosphatase 2A isoform 4 belonging to family 2, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
14 Sobic.007G132400 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
15 Sobic.002G248400 ENT domain containing protein, expressed -
16 Sobic.007G011400 armadillo/beta-catenin repeat family protein, putative, expressed -
17 Sobic.003G084700 - -
18 Sobic.002G350300 gamma response I protein, putative, expressed K13096: splicing factor 4
19 Sobic.003G202800 holocarboxylase synthetase, putative, expressed -
20 Sobic.009G000500 pex14, putative, expressed K13343: peroxin-14


Gene co-expression network
sample Sobic001G107500 Sobic001G107500 Sobic002G320500 Sobic002G320500 Sobic001G107500--Sobic002G320500 Sobic006G133800 Sobic006G133800 Sobic001G107500--Sobic006G133800 Sobic002G157000 Sobic002G157000 Sobic001G107500--Sobic002G157000 Sobic009G065100 Sobic009G065100 Sobic001G107500--Sobic009G065100 Sobic001G090400 Sobic001G090400 Sobic001G107500--Sobic001G090400 Sobic010G056200 Sobic010G056200 Sobic001G107500--Sobic010G056200 Sobic001G497300 Sobic001G497300 Sobic001G107500--Sobic001G497300 Sobic007G104800 Sobic007G104800 Sobic001G107500--Sobic007G104800 Sobic004G205600 Sobic004G205600 Sobic001G107500--Sobic004G205600 Sobic002G320500--Sobic002G157000 Sobic002G248400 Sobic002G248400 Sobic002G320500--Sobic002G248400 Sobic002G320500--Sobic009G065100 Sobic009G210500 Sobic009G210500 Sobic002G320500--Sobic009G210500 Sobic002G320500--Sobic006G133800 Sobic002G320500--Sobic001G107500 Sobic006G032400 Sobic006G032400 Sobic002G320500--Sobic006G032400 Sobic009G000500 Sobic009G000500 Sobic002G320500--Sobic009G000500 Sobic002G320500--Sobic001G090400 Sobic006G133800--Sobic002G320500 Sobic006G133800--Sobic002G157000 Sobic006G133800--Sobic009G000500 Sobic006G133800--Sobic001G107500 Sobic006G133800--Sobic002G248400 Sobic003G197800 Sobic003G197800 Sobic006G133800--Sobic003G197800 Sobic008G173900 Sobic008G173900 Sobic006G133800--Sobic008G173900 Sobic006G133800--Sobic009G210500 Sobic006G133800--Sobic009G065100 Sobic002G157000--Sobic002G248400 Sobic002G157000--Sobic002G320500 Sobic003G200200 Sobic003G200200 Sobic002G157000--Sobic003G200200 Sobic001G420200 Sobic001G420200 Sobic002G157000--Sobic001G420200 Sobic002G157000--Sobic008G173900 Sobic003G268300 Sobic003G268300 Sobic002G157000--Sobic003G268300 Sobic001G162300 Sobic001G162300 Sobic002G157000--Sobic001G162300 Sobic003G108700 Sobic003G108700 Sobic002G157000--Sobic003G108700 Sobic001G094000 Sobic001G094000 Sobic002G157000--Sobic001G094000 Sobic009G065100--Sobic002G320500 Sobic009G065100--Sobic002G157000 Sobic009G065100--Sobic008G173900 Sobic009G215800 Sobic009G215800 Sobic009G065100--Sobic009G215800 Sobic004G084300 Sobic004G084300 Sobic009G065100--Sobic004G084300 Sobic002G144933 Sobic002G144933 Sobic009G065100--Sobic002G144933 Sobic002G309800 Sobic002G309800 Sobic009G065100--Sobic002G309800 Sobic009G065100--Sobic001G107500 Sobic009G065100--Sobic003G197800 Sobic008G067600 Sobic008G067600 Sobic001G090400--Sobic008G067600 Sobic006G173100 Sobic006G173100 Sobic001G090400--Sobic006G173100 Sobic004G057400 Sobic004G057400 Sobic001G090400--Sobic004G057400 Sobic001G176200 Sobic001G176200 Sobic001G090400--Sobic001G176200 Sobic001G090400--Sobic002G320500 Sobic001G090400--Sobic009G000500 Sobic002G157300 Sobic002G157300 Sobic001G090400--Sobic002G157300 Sobic001G090400--Sobic004G205600 Sobic001G090400--Sobic002G248400 Sobic010G056200--Sobic001G107500 Sobic004G113800 Sobic004G113800 Sobic010G056200--Sobic004G113800 Sobic004G083700 Sobic004G083700 Sobic010G056200--Sobic004G083700 Sobic007G052900 Sobic007G052900 Sobic010G056200--Sobic007G052900 Sobic003G324000 Sobic003G324000 Sobic010G056200--Sobic003G324000 Sobic010G056200--Sobic009G065100 Sobic006G228500 Sobic006G228500 Sobic010G056200--Sobic006G228500 Sobic010G056200--Sobic002G309800 Sobic009G157200 Sobic009G157200 Sobic010G056200--Sobic009G157200 Sobic001G497300--Sobic007G104800 Sobic001G512700 Sobic001G512700 Sobic001G497300--Sobic001G512700 Sobic002G006900 Sobic002G006900 Sobic001G497300--Sobic002G006900 Sobic006G237400 Sobic006G237400 Sobic001G497300--Sobic006G237400 Sobic001G497300--Sobic004G205600 Sobic001G413500 Sobic001G413500 Sobic001G497300--Sobic001G413500 Sobic008G047800 Sobic008G047800 Sobic001G497300--Sobic008G047800 Sobic005G023900 Sobic005G023900 Sobic001G497300--Sobic005G023900 Sobic001G497300--Sobic002G157000 Sobic007G104800--Sobic001G497300 Sobic004G021100 Sobic004G021100 Sobic007G104800--Sobic004G021100 Sobic001G119300 Sobic001G119300 Sobic007G104800--Sobic001G119300 Sobic003G187400 Sobic003G187400 Sobic007G104800--Sobic003G187400 Sobic007G200600 Sobic007G200600 Sobic007G104800--Sobic007G200600 Sobic007G104800--Sobic001G512700 Sobic007G104800--Sobic004G205600 Sobic007G026300 Sobic007G026300 Sobic007G104800--Sobic007G026300 Sobic007G104800--Sobic001G107500 Sobic004G205600--Sobic004G057400 Sobic004G205600--Sobic001G497300 Sobic004G205600--Sobic001G090400 Sobic003G081000 Sobic003G081000 Sobic004G205600--Sobic003G081000 Sobic004G205600--Sobic007G026300 Sobic004G205600--Sobic009G000500 Sobic004G205600--Sobic002G157300 Sobic004G205600--Sobic009G065100 Sobic004G205600--Sobic002G157000
Octagon: transcription factors


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