Gene annotation
Transcriptome id Sobic.002G350300.5,Sobic.002G350300.1,Sobic.002G350300.3,Sobic.002G350300.2
Synonym Sb02g037250
Functional annotation gamma response I protein, putative, expressed
UniProt A0A1B6QF44
Pfam PF01805 PF01585
Panther DB PTHR23340
NCBI CDD -
KEGG Orthology K13096; splicing factor 4
Gene Ontology GO:0006396; RNA processing GO:0003723RNA binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G52120 : SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein
RAP-DB (Rice) LOC_Os09g10930.1,LOC_Os09g10930.2 : gamma response I protein, putative, expressed
MaizeGDB (Corn) Zm00025a048476
Brachypodium KQJ89675
Barley -
Wheat TraesCS5A02G174400 , TraesCS5B02G171800 , TraesCS5D02G179000
Populus -


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cDNA sequences
Sobic.002G350300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G179700 TATA-binding protein, putative, expressed K03120: TBP, transcription initiation factor TFIID TATA-box-binding protein
2 Sobic.009G205200 OsFBX170 - F-box domain containing protein, expressed -
3 Sobic.009G179700 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
4 Sobic.001G107500 cyclin-dependent kinase, putative, expressed K08819: cyclin-dependent kinase 12/13
5 Sobic.001G512700 myb/SANT domain protein, putative, expressed -
6 Sobic.007G132400 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
7 Sobic.010G028300 bromodomain domain containing protein, expressed -
8 Sobic.001G119300 mRNA cap guanine-N7 methyltransferase 1, putative, expressed K00565: mRNA (guanine-N7-)-methyltransferase
9 Sobic.006G088100 coiled-coil domain-containing protein 55, putative, expressed K13206: coiled-coil domain-containing protein 55
10 Sobic.003G248200 NLI interacting factor-like phosphatase, putative, expressed -
11 Sobic.007G026300 pre-mRNA-splicing factor SLU7, putative, expressed K12819: pre-mRNA-processing factor SLU7
12 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
13 Sobic.004G121100 expressed protein -
14 Sobic.007G104800 expressed protein -
15 Sobic.003G345400 NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
16 Sobic.007G118200 RNA recognition motif containing protein, expressed K12897: transformer-2 protein
17 Sobic.003G081000 transcription factor, putative, expressed K14431: transcription factor TGA
18 Sobic.009G198100 expressed protein -
19 Sobic.004G117900 expressed protein -
20 Sobic.001G356600 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2


Gene co-expression network
sample Sobic002G350300 Sobic002G350300 Sobic008G179700 Sobic008G179700 Sobic002G350300--Sobic008G179700 Sobic009G205200 Sobic009G205200 Sobic002G350300--Sobic009G205200 Sobic009G179700 Sobic009G179700 Sobic002G350300--Sobic009G179700 Sobic001G107500 Sobic001G107500 Sobic002G350300--Sobic001G107500 Sobic001G512700 Sobic001G512700 Sobic002G350300--Sobic001G512700 Sobic007G132400 Sobic007G132400 Sobic002G350300--Sobic007G132400 Sobic010G028300 Sobic010G028300 Sobic002G350300--Sobic010G028300 Sobic001G119300 Sobic001G119300 Sobic002G350300--Sobic001G119300 Sobic006G088100 Sobic006G088100 Sobic002G350300--Sobic006G088100 Sobic008G179700--Sobic002G350300 Sobic003G248200 Sobic003G248200 Sobic008G179700--Sobic003G248200 Sobic001G281600 Sobic001G281600 Sobic008G179700--Sobic001G281600 Sobic001G356600 Sobic001G356600 Sobic008G179700--Sobic001G356600 Sobic008G179700--Sobic009G179700 Sobic004G084300 Sobic004G084300 Sobic008G179700--Sobic004G084300 Sobic003G401100 Sobic003G401100 Sobic008G179700--Sobic003G401100 Sobic002G126500 Sobic002G126500 Sobic008G179700--Sobic002G126500 Sobic008G179700--Sobic001G512700 Sobic004G121100 Sobic004G121100 Sobic009G205200--Sobic004G121100 Sobic009G205200--Sobic001G107500 Sobic009G205200--Sobic002G350300 Sobic007G104800 Sobic007G104800 Sobic009G205200--Sobic007G104800 Sobic006G200600 Sobic006G200600 Sobic009G205200--Sobic006G200600 Sobic003G345400 Sobic003G345400 Sobic009G205200--Sobic003G345400 Sobic009G205200--Sobic001G119300 Sobic009G205200--Sobic003G248200 Sobic009G205200--Sobic008G179700 Sobic009G179700--Sobic002G350300 Sobic009G179700--Sobic001G356600 Sobic007G078600 Sobic007G078600 Sobic009G179700--Sobic007G078600 Sobic010G018700 Sobic010G018700 Sobic009G179700--Sobic010G018700 Sobic009G179700--Sobic008G179700 Sobic007G078500 Sobic007G078500 Sobic009G179700--Sobic007G078500 Sobic003G029100 Sobic003G029100 Sobic009G179700--Sobic003G029100 Sobic007G061000 Sobic007G061000 Sobic009G179700--Sobic007G061000 Sobic009G179700--Sobic001G512700 Sobic002G320500 Sobic002G320500 Sobic001G107500--Sobic002G320500 Sobic006G133800 Sobic006G133800 Sobic001G107500--Sobic006G133800 Sobic002G157000 Sobic002G157000 Sobic001G107500--Sobic002G157000 Sobic009G065100 Sobic009G065100 Sobic001G107500--Sobic009G065100 Sobic001G090400 Sobic001G090400 Sobic001G107500--Sobic001G090400 Sobic010G056200 Sobic010G056200 Sobic001G107500--Sobic010G056200 Sobic001G497300 Sobic001G497300 Sobic001G107500--Sobic001G497300 Sobic001G107500--Sobic007G104800 Sobic004G205600 Sobic004G205600 Sobic001G107500--Sobic004G205600 Sobic008G047800 Sobic008G047800 Sobic001G512700--Sobic008G047800 Sobic002G006900 Sobic002G006900 Sobic001G512700--Sobic002G006900 Sobic001G512700--Sobic003G248200 Sobic001G512700--Sobic001G497300 Sobic007G118600 Sobic007G118600 Sobic001G512700--Sobic007G118600 Sobic004G021100 Sobic004G021100 Sobic001G512700--Sobic004G021100 Sobic005G045300 Sobic005G045300 Sobic001G512700--Sobic005G045300 Sobic002G297200 Sobic002G297200 Sobic001G512700--Sobic002G297200 Sobic008G067600 Sobic008G067600 Sobic001G512700--Sobic008G067600 Sobic007G132400--Sobic004G084300 Sobic003G241200 Sobic003G241200 Sobic007G132400--Sobic003G241200 Sobic007G132400--Sobic008G067600 Sobic007G132400--Sobic007G104800 Sobic003G220200 Sobic003G220200 Sobic007G132400--Sobic003G220200 Sobic007G132400--Sobic001G107500 Sobic003G081000 Sobic003G081000 Sobic007G132400--Sobic003G081000 Sobic007G132400--Sobic002G320500 Sobic002G310200 Sobic002G310200 Sobic007G132400--Sobic002G310200 Sobic010G028300--Sobic003G401100 Sobic010G028300--Sobic002G350300 Sobic001G056200 Sobic001G056200 Sobic010G028300--Sobic001G056200 Sobic006G121300 Sobic006G121300 Sobic010G028300--Sobic006G121300 Sobic001G131800 Sobic001G131800 Sobic010G028300--Sobic001G131800 Sobic001G315100 Sobic001G315100 Sobic010G028300--Sobic001G315100 Sobic010G028300--Sobic008G179700 Sobic010G028300--Sobic003G081000 Sobic004G013600 Sobic004G013600 Sobic010G028300--Sobic004G013600 Sobic001G119300--Sobic007G104800 Sobic007G200600 Sobic007G200600 Sobic001G119300--Sobic007G200600 Sobic007G026300 Sobic007G026300 Sobic001G119300--Sobic007G026300 Sobic001G119300--Sobic002G350300 Sobic001G119300--Sobic006G088100 Sobic001G119300--Sobic009G205200 Sobic002G200100 Sobic002G200100 Sobic001G119300--Sobic002G200100 Sobic001G371200 Sobic001G371200 Sobic001G119300--Sobic001G371200 Sobic002G090800 Sobic002G090800 Sobic001G119300--Sobic002G090800 Sobic006G088100--Sobic001G056200 Sobic004G263900 Sobic004G263900 Sobic006G088100--Sobic004G263900 Sobic003G202800 Sobic003G202800 Sobic006G088100--Sobic003G202800 Sobic003G437500 Sobic003G437500 Sobic006G088100--Sobic003G437500 Sobic003G261300 Sobic003G261300 Sobic006G088100--Sobic003G261300 Sobic006G209500 Sobic006G209500 Sobic006G088100--Sobic006G209500 Sobic006G088100--Sobic001G119300 Sobic006G088100--Sobic002G350300 Sobic006G128800 Sobic006G128800 Sobic006G088100--Sobic006G128800
Octagon: transcription factors


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