Gene annotation
Transcriptome id Sobic.007G132400.1
Synonym ALY4, Sb07g020860
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5YL34
Pfam PF00076
Panther DB PTHR19965 PTHR19965:SF33
NCBI CDD -
KEGG Orthology K12881; THOC4, THO complex subunit 4
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G37720 : ALWAYS EARLY 4
RAP-DB (Rice) LOC_Os08g33120.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a031092
Brachypodium KQJ98338
Barley HORVU2Hr1G011700.5 , HORVU2Hr1G011700.4 , HORVU2Hr1G011700.7 , HORVU2Hr1G011700.6 , HORVU2Hr1G011700.1 , HORVU2Hr1G011700.3 , HORVU2Hr1G011700.2
Wheat TraesCS2D02G059800 , TraesCS2A02G060200 , TraesCS2A02G060200 , TraesCS2B02G073800
Populus -


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cDNA sequences
Sobic.007G132400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
2 Sobic.003G241200 nucampholin, putative, expressed K13100: pre-mRNA-splicing factor CWC22
3 Sobic.008G067600 protein kinase PKN/PRK1, effector, putative, expressed -
4 Sobic.007G104800 expressed protein -
5 Sobic.003G220200 protein kinase family protein, putative, expressed K17541: SCY1-like protein 2
6 Sobic.001G107500 cyclin-dependent kinase, putative, expressed K08819: cyclin-dependent kinase 12/13
7 Sobic.003G081000 transcription factor, putative, expressed K14431: transcription factor TGA
8 Sobic.002G320500 MYB family transcription factor, putative, expressed -
9 Sobic.002G310200 expressed protein -
10 Sobic.002G350300 gamma response I protein, putative, expressed K13096: splicing factor 4
11 Sobic.001G298600 ribosomal L18p/L5e family protein, expressed -
12 Sobic.010G101800 dynamin, putative, expressed K01528: dynamin 1/3
13 Sobic.001G131800 expressed protein K15186: ELL-associated factor
14 Sobic.002G297200 ZOS9-19 - C2H2 zinc finger protein, expressed -
15 Sobic.001G222500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
16 Sobic.006G165000 RNA recognition motif containing protein, expressed -
17 Sobic.007G200600 ZOS8-11 - C2H2 zinc finger protein, expressed -
18 Sobic.001G090400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
19 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
20 Sobic.002G157000 enhancer of polycomb, putative, expressed K11322: enhancer of polycomb-like protein


Gene co-expression network
sample Sobic007G132400 Sobic007G132400 Sobic004G084300 Sobic004G084300 Sobic007G132400--Sobic004G084300 Sobic003G241200 Sobic003G241200 Sobic007G132400--Sobic003G241200 Sobic008G067600 Sobic008G067600 Sobic007G132400--Sobic008G067600 Sobic007G104800 Sobic007G104800 Sobic007G132400--Sobic007G104800 Sobic003G220200 Sobic003G220200 Sobic007G132400--Sobic003G220200 Sobic001G107500 Sobic001G107500 Sobic007G132400--Sobic001G107500 Sobic003G081000 Sobic003G081000 Sobic007G132400--Sobic003G081000 Sobic002G320500 Sobic002G320500 Sobic007G132400--Sobic002G320500 Sobic002G310200 Sobic002G310200 Sobic007G132400--Sobic002G310200 Sobic008G047800 Sobic008G047800 Sobic004G084300--Sobic008G047800 Sobic001G222500 Sobic001G222500 Sobic004G084300--Sobic001G222500 Sobic004G084300--Sobic003G241200 Sobic002G006900 Sobic002G006900 Sobic004G084300--Sobic002G006900 Sobic010G236400 Sobic010G236400 Sobic004G084300--Sobic010G236400 Sobic009G040600 Sobic009G040600 Sobic004G084300--Sobic009G040600 Sobic004G084300--Sobic008G067600 Sobic009G065100 Sobic009G065100 Sobic004G084300--Sobic009G065100 Sobic004G084300--Sobic007G132400 Sobic003G241200--Sobic004G084300 Sobic006G165000 Sobic006G165000 Sobic003G241200--Sobic006G165000 Sobic006G032400 Sobic006G032400 Sobic003G241200--Sobic006G032400 Sobic002G248400 Sobic002G248400 Sobic003G241200--Sobic002G248400 Sobic003G241200--Sobic002G320500 Sobic003G173950 Sobic003G173950 Sobic003G241200--Sobic003G173950 Sobic003G241200--Sobic010G236400 Sobic003G200200 Sobic003G200200 Sobic003G241200--Sobic003G200200 Sobic002G157000 Sobic002G157000 Sobic003G241200--Sobic002G157000 Sobic001G090400 Sobic001G090400 Sobic008G067600--Sobic001G090400 Sobic003G445400 Sobic003G445400 Sobic008G067600--Sobic003G445400 Sobic008G067600--Sobic004G084300 Sobic002G157300 Sobic002G157300 Sobic008G067600--Sobic002G157300 Sobic001G315100 Sobic001G315100 Sobic008G067600--Sobic001G315100 Sobic001G512700 Sobic001G512700 Sobic008G067600--Sobic001G512700 Sobic009G000500 Sobic009G000500 Sobic008G067600--Sobic009G000500 Sobic004G057400 Sobic004G057400 Sobic008G067600--Sobic004G057400 Sobic008G067600--Sobic008G047800 Sobic001G497300 Sobic001G497300 Sobic007G104800--Sobic001G497300 Sobic004G021100 Sobic004G021100 Sobic007G104800--Sobic004G021100 Sobic001G119300 Sobic001G119300 Sobic007G104800--Sobic001G119300 Sobic003G187400 Sobic003G187400 Sobic007G104800--Sobic003G187400 Sobic007G200600 Sobic007G200600 Sobic007G104800--Sobic007G200600 Sobic007G104800--Sobic001G512700 Sobic004G205600 Sobic004G205600 Sobic007G104800--Sobic004G205600 Sobic007G026300 Sobic007G026300 Sobic007G104800--Sobic007G026300 Sobic007G104800--Sobic001G107500 Sobic007G145200 Sobic007G145200 Sobic003G220200--Sobic007G145200 Sobic003G220200--Sobic002G157300 Sobic003G220200--Sobic002G157000 Sobic003G220200--Sobic002G320500 Sobic007G137900 Sobic007G137900 Sobic003G220200--Sobic007G137900 Sobic001G251700 Sobic001G251700 Sobic003G220200--Sobic001G251700 Sobic007G011400 Sobic007G011400 Sobic003G220200--Sobic007G011400 Sobic004G349900 Sobic004G349900 Sobic003G220200--Sobic004G349900 Sobic003G220200--Sobic001G107500 Sobic001G107500--Sobic002G320500 Sobic006G133800 Sobic006G133800 Sobic001G107500--Sobic006G133800 Sobic001G107500--Sobic002G157000 Sobic001G107500--Sobic009G065100 Sobic001G107500--Sobic001G090400 Sobic010G056200 Sobic010G056200 Sobic001G107500--Sobic010G056200 Sobic001G107500--Sobic001G497300 Sobic001G107500--Sobic007G104800 Sobic001G107500--Sobic004G205600 Sobic007G118200 Sobic007G118200 Sobic003G081000--Sobic007G118200 Sobic008G174300 Sobic008G174300 Sobic003G081000--Sobic008G174300 Sobic002G034600 Sobic002G034600 Sobic003G081000--Sobic002G034600 Sobic003G081000--Sobic004G205600 Sobic009G198100 Sobic009G198100 Sobic003G081000--Sobic009G198100 Sobic006G252700 Sobic006G252700 Sobic003G081000--Sobic006G252700 Sobic010G033400 Sobic010G033400 Sobic003G081000--Sobic010G033400 Sobic001G466700 Sobic001G466700 Sobic003G081000--Sobic001G466700 Sobic004G350100 Sobic004G350100 Sobic003G081000--Sobic004G350100 Sobic002G320500--Sobic002G157000 Sobic002G320500--Sobic002G248400 Sobic002G320500--Sobic009G065100 Sobic009G210500 Sobic009G210500 Sobic002G320500--Sobic009G210500 Sobic002G320500--Sobic006G133800 Sobic002G320500--Sobic001G107500 Sobic002G320500--Sobic006G032400 Sobic002G320500--Sobic009G000500 Sobic002G320500--Sobic001G090400 Sobic002G310200--Sobic001G222500 Sobic002G310200--Sobic008G047800 Sobic007G217000 Sobic007G217000 Sobic002G310200--Sobic007G217000 Sobic002G310200--Sobic004G084300 Sobic007G096000 Sobic007G096000 Sobic002G310200--Sobic007G096000 Sobic010G101800 Sobic010G101800 Sobic002G310200--Sobic010G101800 Sobic003G443100 Sobic003G443100 Sobic002G310200--Sobic003G443100 Sobic002G310200--Sobic008G067600 Sobic004G067700 Sobic004G067700 Sobic002G310200--Sobic004G067700
Octagon: transcription factors


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