Gene annotation
Transcriptome id Sobic.002G310200.1
Synonym Sb02g033990
Functional annotation expressed protein
UniProt C5X9A4
Pfam PF15982 PF02466
Panther DB PTHR12459 PTHR12459:SF7
NCBI CDD KOG1398; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G51150 : Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein
RAP-DB (Rice) LOC_Os07g31260.1 : expressed protein
MaizeGDB (Corn) Zm00025a023215 , Zm00025a048133 , Zm00025a056915
Brachypodium KQK16151
Barley HORVU2Hr1G051560.11 , HORVU2Hr1G051560.10 , HORVU2Hr1G051560.13 , HORVU2Hr1G051560.12 , HORVU2Hr1G051560.15 , HORVU2Hr1G051560.14 , HORVU2Hr1G051560.17 , HORVU2Hr1G051560.16 , HORVU2Hr1G051560.9 , HORVU2Hr1G051560.8 , HORVU2Hr1G051560.5 , HORVU2Hr1G051560.4 , HORVU2Hr1G051560.7 , HORVU2Hr1G051560.6 , HORVU2Hr1G051560.1 , HORVU2Hr1G051560.3 , HORVU2Hr1G051560.2
Wheat TraesCS2B02G254400 , TraesCS2D02G236700 , TraesCS2A02G226700
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G222500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
2 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
3 Sobic.007G217000 tetratricopeptide repeat domain containing protein, expressed K13342: PEX5, peroxin-5
4 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
5 Sobic.007G096000 expressed protein -
6 Sobic.010G101800 dynamin, putative, expressed K01528: dynamin 1/3
7 Sobic.003G443100 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
8 Sobic.008G067600 protein kinase PKN/PRK1, effector, putative, expressed -
9 Sobic.004G067700 BRCA1-associated protein, putative, expressed K10632: BRCA1-associated protein
10 Sobic.003G187500 ATP-binding region, ATPase-like domain containing protein, expressed -
11 Sobic.009G126400 glycine-rich protein, putative, expressed K14845: RAI1, RAT1-interacting protein
12 Sobic.002G158700 TATA binding protein-associated factor, putative, expressed K03131: transcription initiation factor TFIID subunit 6
13 Sobic.004G072100 centromere/kinetochore protein zw10, putative, expressed K11578: ZW10, protein transport protein DSL1/ZW10
14 Sobic.010G053800 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1
15 Sobic.010G028800 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -
16 Sobic.009G245800 protein of unknown function DUF1296 domain containing protein, expressed -
17 Sobic.006G195700 WD domain, G-beta repeat domain containing protein, expressed K14962: WDR82, SWD2, COMPASS component SWD2
18 Sobic.002G370900 OsPOP16 - Putative Prolyl Oligopeptidase homologue, expressed K06889: uncharacterized protein
19 Sobic.007G132400 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
20 Sobic.006G237400 cyclic nucleotide-gated ion channel, putative, expressed K05391: cyclic nucleotide gated channel, plant


Gene co-expression network
sample Sobic002G310200 Sobic002G310200 Sobic001G222500 Sobic001G222500 Sobic002G310200--Sobic001G222500 Sobic008G047800 Sobic008G047800 Sobic002G310200--Sobic008G047800 Sobic007G217000 Sobic007G217000 Sobic002G310200--Sobic007G217000 Sobic004G084300 Sobic004G084300 Sobic002G310200--Sobic004G084300 Sobic007G096000 Sobic007G096000 Sobic002G310200--Sobic007G096000 Sobic010G101800 Sobic010G101800 Sobic002G310200--Sobic010G101800 Sobic003G443100 Sobic003G443100 Sobic002G310200--Sobic003G443100 Sobic008G067600 Sobic008G067600 Sobic002G310200--Sobic008G067600 Sobic004G067700 Sobic004G067700 Sobic002G310200--Sobic004G067700 Sobic001G222500--Sobic004G084300 Sobic001G222500--Sobic008G047800 Sobic001G155000 Sobic001G155000 Sobic001G222500--Sobic001G155000 Sobic001G222500--Sobic002G310200 Sobic009G126400 Sobic009G126400 Sobic001G222500--Sobic009G126400 Sobic009G040600 Sobic009G040600 Sobic001G222500--Sobic009G040600 Sobic002G006900 Sobic002G006900 Sobic001G222500--Sobic002G006900 Sobic003G052200 Sobic003G052200 Sobic001G222500--Sobic003G052200 Sobic001G222500--Sobic007G096000 Sobic008G047800--Sobic002G006900 Sobic008G047800--Sobic004G084300 Sobic001G512700 Sobic001G512700 Sobic008G047800--Sobic001G512700 Sobic008G047800--Sobic001G155000 Sobic008G047800--Sobic009G040600 Sobic007G011300 Sobic007G011300 Sobic008G047800--Sobic007G011300 Sobic008G047800--Sobic007G217000 Sobic004G274200 Sobic004G274200 Sobic008G047800--Sobic004G274200 Sobic002G309600 Sobic002G309600 Sobic008G047800--Sobic002G309600 Sobic001G114000 Sobic001G114000 Sobic007G217000--Sobic001G114000 Sobic007G217000--Sobic008G047800 Sobic009G166300 Sobic009G166300 Sobic007G217000--Sobic009G166300 Sobic007G217000--Sobic001G155000 Sobic001G474600 Sobic001G474600 Sobic007G217000--Sobic001G474600 Sobic007G217000--Sobic007G011300 Sobic007G118600 Sobic007G118600 Sobic007G217000--Sobic007G118600 Sobic007G217000--Sobic002G310200 Sobic007G217000--Sobic004G067700 Sobic004G084300--Sobic008G047800 Sobic004G084300--Sobic001G222500 Sobic003G241200 Sobic003G241200 Sobic004G084300--Sobic003G241200 Sobic004G084300--Sobic002G006900 Sobic010G236400 Sobic010G236400 Sobic004G084300--Sobic010G236400 Sobic004G084300--Sobic009G040600 Sobic004G084300--Sobic008G067600 Sobic009G065100 Sobic009G065100 Sobic004G084300--Sobic009G065100 Sobic007G132400 Sobic007G132400 Sobic004G084300--Sobic007G132400 Sobic003G280800 Sobic003G280800 Sobic007G096000--Sobic003G280800 Sobic003G445400 Sobic003G445400 Sobic007G096000--Sobic003G445400 Sobic004G039700 Sobic004G039700 Sobic007G096000--Sobic004G039700 Sobic007G096000--Sobic009G126400 Sobic003G084900 Sobic003G084900 Sobic007G096000--Sobic003G084900 Sobic007G096000--Sobic001G474600 Sobic007G096000--Sobic001G222500 Sobic007G096000--Sobic002G310200 Sobic009G000500 Sobic009G000500 Sobic007G096000--Sobic009G000500 Sobic002G297200 Sobic002G297200 Sobic010G101800--Sobic002G297200 Sobic010G101800--Sobic001G155000 Sobic007G167500 Sobic007G167500 Sobic010G101800--Sobic007G167500 Sobic010G028800 Sobic010G028800 Sobic010G101800--Sobic010G028800 Sobic003G397800 Sobic003G397800 Sobic010G101800--Sobic003G397800 Sobic001G409600 Sobic001G409600 Sobic010G101800--Sobic001G409600 Sobic010G101800--Sobic002G310200 Sobic010G053800 Sobic010G053800 Sobic010G101800--Sobic010G053800 Sobic010G101800--Sobic002G309600 Sobic003G443100--Sobic002G310200 Sobic003G184699 Sobic003G184699 Sobic003G443100--Sobic003G184699 Sobic003G443100--Sobic008G047800 Sobic001G441400 Sobic001G441400 Sobic003G443100--Sobic001G441400 Sobic009G245800 Sobic009G245800 Sobic003G443100--Sobic009G245800 Sobic005G027400 Sobic005G027400 Sobic003G443100--Sobic005G027400 Sobic003G141500 Sobic003G141500 Sobic003G443100--Sobic003G141500 Sobic001G363500 Sobic001G363500 Sobic003G443100--Sobic001G363500 Sobic003G443100--Sobic010G053800 Sobic001G090400 Sobic001G090400 Sobic008G067600--Sobic001G090400 Sobic008G067600--Sobic003G445400 Sobic008G067600--Sobic004G084300 Sobic002G157300 Sobic002G157300 Sobic008G067600--Sobic002G157300 Sobic001G315100 Sobic001G315100 Sobic008G067600--Sobic001G315100 Sobic008G067600--Sobic001G512700 Sobic008G067600--Sobic009G000500 Sobic004G057400 Sobic004G057400 Sobic008G067600--Sobic004G057400 Sobic008G067600--Sobic008G047800 Sobic004G067700--Sobic001G114000 Sobic006G173100 Sobic006G173100 Sobic004G067700--Sobic006G173100 Sobic002G370900 Sobic002G370900 Sobic004G067700--Sobic002G370900 Sobic004G067700--Sobic001G512700 Sobic004G067700--Sobic007G217000 Sobic004G067700--Sobic009G126400 Sobic005G045300 Sobic005G045300 Sobic004G067700--Sobic005G045300 Sobic003G008500 Sobic003G008500 Sobic004G067700--Sobic003G008500 Sobic004G067700--Sobic002G310200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.