Gene annotation
Transcriptome id Sobic.009G126400.1
Synonym Sb09g019380
Functional annotation glycine-rich protein, putative, expressed
UniProt C5YXJ2
Pfam PF08652
Panther DB PTHR12395 PTHR12395:SF9
NCBI CDD KOG1982; Nuclear 5'-3' exoribonuclease-interacting protein, Rai1p
KEGG Orthology K14845; RAI1, RAT1-interacting protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G17620 : glycine-rich protein
RAP-DB (Rice) LOC_Os05g32580.1 : glycine-rich protein, putative, expressed
MaizeGDB (Corn) Zm00025a043579
Brachypodium KQK06476
Barley -
Wheat TraesCS1B02G256300 , TraesCS1B02G256300 , TraesCS1A02G245300 , TraesCS1A02G245300 , TraesCS1D02G245000
Populus -


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cDNA sequences
Sobic.009G126400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G052200 G-patch domain containing protein, expressed -
2 Sobic.009G040600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
3 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
4 Sobic.003G280800 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
5 Sobic.001G222500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
6 Sobic.008G162900 peroxisome assembly protein, putative, expressed K06664: PEX2, peroxin-2
7 Sobic.007G096000 expressed protein -
8 Sobic.004G208900 RNA-binding protein Luc7-like, putative, expressed -
9 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
10 Sobic.010G129200 - -
11 Sobic.004G009600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
12 Sobic.001G114000 expressed protein -
13 Sobic.010G136600 - -
14 Sobic.001G407200 SacI homology domain containing protein, expressed -
15 Sobic.001G071400 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
16 Sobic.004G067700 BRCA1-associated protein, putative, expressed K10632: BRCA1-associated protein
17 Sobic.001G241200 protein kinase domain containing protein, expressed -
18 Sobic.007G217000 tetratricopeptide repeat domain containing protein, expressed K13342: PEX5, peroxin-5
19 Sobic.001G154900 "GL3.1/qGL3(Ortholog in rice:Qi et al., 2012, Zhang et al., 2012)"(PubMedID : 31659834)@serine/threonine protein phosphatase, putative, expressed -
20 Sobic.001G155000 DNA-directed RNA polymerase II subunit RPB2, putative, expressed K03010: RPB2, DNA-directed RNA polymerase II subunit RPB2


Gene co-expression network
sample Sobic009G126400 Sobic009G126400 Sobic003G052200 Sobic003G052200 Sobic009G126400--Sobic003G052200 Sobic009G040600 Sobic009G040600 Sobic009G126400--Sobic009G040600 Sobic008G047800 Sobic008G047800 Sobic009G126400--Sobic008G047800 Sobic003G280800 Sobic003G280800 Sobic009G126400--Sobic003G280800 Sobic001G222500 Sobic001G222500 Sobic009G126400--Sobic001G222500 Sobic008G162900 Sobic008G162900 Sobic009G126400--Sobic008G162900 Sobic007G096000 Sobic007G096000 Sobic009G126400--Sobic007G096000 Sobic004G208900 Sobic004G208900 Sobic009G126400--Sobic004G208900 Sobic002G309600 Sobic002G309600 Sobic009G126400--Sobic002G309600 Sobic003G052200--Sobic009G126400 Sobic003G052200--Sobic004G208900 Sobic003G052200--Sobic001G222500 Sobic003G052200--Sobic009G040600 Sobic003G052200--Sobic008G162900 Sobic008G028700 Sobic008G028700 Sobic003G052200--Sobic008G028700 Sobic004G009600 Sobic004G009600 Sobic003G052200--Sobic004G009600 Sobic010G279450 Sobic010G279450 Sobic003G052200--Sobic010G279450 Sobic009G024000 Sobic009G024000 Sobic003G052200--Sobic009G024000 Sobic009G040600--Sobic004G009600 Sobic002G006900 Sobic002G006900 Sobic009G040600--Sobic002G006900 Sobic009G040600--Sobic008G047800 Sobic009G040600--Sobic004G208900 Sobic005G112300 Sobic005G112300 Sobic009G040600--Sobic005G112300 Sobic007G065400 Sobic007G065400 Sobic009G040600--Sobic007G065400 Sobic009G040600--Sobic008G028700 Sobic009G040600--Sobic002G309600 Sobic009G040600--Sobic009G126400 Sobic008G047800--Sobic002G006900 Sobic004G084300 Sobic004G084300 Sobic008G047800--Sobic004G084300 Sobic001G512700 Sobic001G512700 Sobic008G047800--Sobic001G512700 Sobic001G155000 Sobic001G155000 Sobic008G047800--Sobic001G155000 Sobic008G047800--Sobic009G040600 Sobic007G011300 Sobic007G011300 Sobic008G047800--Sobic007G011300 Sobic007G217000 Sobic007G217000 Sobic008G047800--Sobic007G217000 Sobic004G274200 Sobic004G274200 Sobic008G047800--Sobic004G274200 Sobic008G047800--Sobic002G309600 Sobic003G280800--Sobic002G309600 Sobic001G071400 Sobic001G071400 Sobic003G280800--Sobic001G071400 Sobic002G134200 Sobic002G134200 Sobic003G280800--Sobic002G134200 Sobic006G209850 Sobic006G209850 Sobic003G280800--Sobic006G209850 Sobic003G119000 Sobic003G119000 Sobic003G280800--Sobic003G119000 Sobic001G474600 Sobic001G474600 Sobic003G280800--Sobic001G474600 Sobic007G117400 Sobic007G117400 Sobic003G280800--Sobic007G117400 Sobic006G216800 Sobic006G216800 Sobic003G280800--Sobic006G216800 Sobic003G372700 Sobic003G372700 Sobic003G280800--Sobic003G372700 Sobic001G222500--Sobic004G084300 Sobic001G222500--Sobic008G047800 Sobic001G222500--Sobic001G155000 Sobic002G310200 Sobic002G310200 Sobic001G222500--Sobic002G310200 Sobic001G222500--Sobic009G126400 Sobic001G222500--Sobic009G040600 Sobic001G222500--Sobic002G006900 Sobic001G222500--Sobic003G052200 Sobic001G222500--Sobic007G096000 Sobic003G184699 Sobic003G184699 Sobic008G162900--Sobic003G184699 Sobic008G162900--Sobic009G126400 Sobic008G162900--Sobic008G047800 Sobic001G407200 Sobic001G407200 Sobic008G162900--Sobic001G407200 Sobic005G013200 Sobic005G013200 Sobic008G162900--Sobic005G013200 Sobic008G162900--Sobic003G052200 Sobic008G162900--Sobic006G216800 Sobic008G162900--Sobic001G222500 Sobic002G343901 Sobic002G343901 Sobic008G162900--Sobic002G343901 Sobic007G096000--Sobic003G280800 Sobic003G445400 Sobic003G445400 Sobic007G096000--Sobic003G445400 Sobic004G039700 Sobic004G039700 Sobic007G096000--Sobic004G039700 Sobic007G096000--Sobic009G126400 Sobic003G084900 Sobic003G084900 Sobic007G096000--Sobic003G084900 Sobic007G096000--Sobic001G474600 Sobic007G096000--Sobic001G222500 Sobic007G096000--Sobic002G310200 Sobic009G000500 Sobic009G000500 Sobic007G096000--Sobic009G000500 Sobic004G208900--Sobic009G040600 Sobic010G277500 Sobic010G277500 Sobic004G208900--Sobic010G277500 Sobic004G208900--Sobic003G052200 Sobic010G139000 Sobic010G139000 Sobic004G208900--Sobic010G139000 Sobic008G113100 Sobic008G113100 Sobic004G208900--Sobic008G113100 Sobic004G208900--Sobic002G006900 Sobic004G208900--Sobic008G028700 Sobic004G208900--Sobic003G280800 Sobic004G208900--Sobic009G126400 Sobic002G309600--Sobic003G280800 Sobic002G309600--Sobic002G134200 Sobic002G309600--Sobic007G117400 Sobic008G009700 Sobic008G009700 Sobic002G309600--Sobic008G009700 Sobic002G309600--Sobic001G071400 Sobic002G309600--Sobic005G112300 Sobic004G065100 Sobic004G065100 Sobic002G309600--Sobic004G065100 Sobic001G154900 Sobic001G154900 Sobic002G309600--Sobic001G154900 Sobic002G309600--Sobic002G006900
Octagon: transcription factors


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