Gene annotation
Transcriptome id Sobic.003G052200.2
Synonym Sb03g004530
Functional annotation G-patch domain containing protein, expressed
UniProt A0A1W0VVU4
Pfam PF01585
Panther DB PTHR13948 PTHR13948:SF19
NCBI CDD KOG0154; RNA-binding protein RBM5 and related proteins, contain G-patch and RRM domains
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G34140 : D111/G-patch domain-containing protein
RAP-DB (Rice) LOC_Os01g07540.1 : G-patch domain containing protein, expressed
MaizeGDB (Corn) Zm00025a023263
Brachypodium PNT70031 , PNT70035 , PNT70036 , PNT70030 , KQK02900 , PNT70032 , PNT70033 , KQK02901 , KQK02897 , PNT70027 , PNT70026 , PNT70025 , KQK02902 , KQK02891 , KQK02892 , KQK02893 , KQK02894 , KQK02895 , KQK02896 , KQK02898 , KQK02899
Barley HORVU3Hr1G016360.51 , HORVU3Hr1G016360.19 , HORVU3Hr1G016360.18 , HORVU3Hr1G016360.17 , HORVU3Hr1G016360.16 , HORVU3Hr1G016360.15 , HORVU3Hr1G016360.14 , HORVU3Hr1G016360.13 , HORVU3Hr1G016360.12 , HORVU3Hr1G016360.11 , HORVU3Hr1G016360.10 , HORVU3Hr1G016360.31 , HORVU3Hr1G016360.30 , HORVU3Hr1G016360.33 , HORVU3Hr1G016360.32 , HORVU3Hr1G016360.35 , HORVU3Hr1G016360.34 , HORVU3Hr1G016360.37 , HORVU3Hr1G016360.36 , HORVU3Hr1G016360.39 , HORVU3Hr1G016360.38 , HORVU3Hr1G016360.26 , HORVU3Hr1G016360.27 , HORVU3Hr1G016360.24 , HORVU3Hr1G016360.25 , HORVU3Hr1G016360.22 , HORVU3Hr1G016360.23 , HORVU3Hr1G016360.20 , HORVU3Hr1G016360.21 , HORVU3Hr1G016360.28 , HORVU3Hr1G016360.29 , HORVU3Hr1G016360.53 , HORVU3Hr1G016360.52 , HORVU3Hr1G016360.50 , HORVU3Hr1G016360.55 , HORVU3Hr1G016360.54 , HORVU3Hr1G016360.40 , HORVU3Hr1G016360.41 , HORVU3Hr1G016360.42 , HORVU3Hr1G016360.43 , HORVU3Hr1G016360.44 , HORVU3Hr1G016360.45 , HORVU3Hr1G016360.46 , HORVU3Hr1G016360.47 , HORVU3Hr1G016360.48 , HORVU3Hr1G016360.49 , HORVU3Hr1G016360.7 , HORVU3Hr1G016360.6 , HORVU3Hr1G016360.5 , HORVU3Hr1G016360.9 , HORVU3Hr1G016360.8
Wheat TraesCS3A02G092400 , TraesCS3D02G092500 , TraesCS3D02G092500 , TraesCS3D02G092500 , TraesCS3B02G107500 , TraesCS3B02G107500
Populus -


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cDNA sequences
Sobic.003G052200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G126400 glycine-rich protein, putative, expressed K14845: RAI1, RAT1-interacting protein
2 Sobic.004G208900 RNA-binding protein Luc7-like, putative, expressed -
3 Sobic.001G222500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
4 Sobic.009G040600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
5 Sobic.008G162900 peroxisome assembly protein, putative, expressed K06664: PEX2, peroxin-2
6 Sobic.008G028700 SET domain containing protein, expressed -
7 Sobic.004G009600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
8 Sobic.010G279450 - K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
9 Sobic.009G024000 nuclear factor related to kappa-B-binding protein, related, putative, expressed K11671: NFRKB, nuclear factor related to kappa-B-binding protein
10 Sobic.002G408200 sec8 exocyst complex component specific domain containing protein, expressed K06111: EXOC4, exocyst complex component 4
11 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
12 Sobic.005G013200 BAH domain containing protein, expressed -
13 Sobic.010G136600 - -
14 Sobic.002G405800 PHD-finger family protein, expressed -
15 Sobic.003G280800 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
16 Sobic.010G247800 zinc finger, C3HC4 type domain containing protein, expressed K10696: E3 ubiquitin-protein ligase BRE1
17 Sobic.010G277500 expressed protein -
18 Sobic.008G113100 protein binding protein, putative, expressed -
19 Sobic.004G039700 OsFBX188 - F-box domain containing protein, expressed -
20 Sobic.001G154900 "GL3.1/qGL3(Ortholog in rice:Qi et al., 2012, Zhang et al., 2012)"(PubMedID : 31659834)@serine/threonine protein phosphatase, putative, expressed -


Gene co-expression network
sample Sobic003G052200 Sobic003G052200 Sobic009G126400 Sobic009G126400 Sobic003G052200--Sobic009G126400 Sobic004G208900 Sobic004G208900 Sobic003G052200--Sobic004G208900 Sobic001G222500 Sobic001G222500 Sobic003G052200--Sobic001G222500 Sobic009G040600 Sobic009G040600 Sobic003G052200--Sobic009G040600 Sobic008G162900 Sobic008G162900 Sobic003G052200--Sobic008G162900 Sobic008G028700 Sobic008G028700 Sobic003G052200--Sobic008G028700 Sobic004G009600 Sobic004G009600 Sobic003G052200--Sobic004G009600 Sobic010G279450 Sobic010G279450 Sobic003G052200--Sobic010G279450 Sobic009G024000 Sobic009G024000 Sobic003G052200--Sobic009G024000 Sobic009G126400--Sobic003G052200 Sobic009G126400--Sobic009G040600 Sobic008G047800 Sobic008G047800 Sobic009G126400--Sobic008G047800 Sobic003G280800 Sobic003G280800 Sobic009G126400--Sobic003G280800 Sobic009G126400--Sobic001G222500 Sobic009G126400--Sobic008G162900 Sobic007G096000 Sobic007G096000 Sobic009G126400--Sobic007G096000 Sobic009G126400--Sobic004G208900 Sobic002G309600 Sobic002G309600 Sobic009G126400--Sobic002G309600 Sobic004G208900--Sobic009G040600 Sobic010G277500 Sobic010G277500 Sobic004G208900--Sobic010G277500 Sobic004G208900--Sobic003G052200 Sobic010G139000 Sobic010G139000 Sobic004G208900--Sobic010G139000 Sobic008G113100 Sobic008G113100 Sobic004G208900--Sobic008G113100 Sobic002G006900 Sobic002G006900 Sobic004G208900--Sobic002G006900 Sobic004G208900--Sobic008G028700 Sobic004G208900--Sobic003G280800 Sobic004G208900--Sobic009G126400 Sobic004G084300 Sobic004G084300 Sobic001G222500--Sobic004G084300 Sobic001G222500--Sobic008G047800 Sobic001G155000 Sobic001G155000 Sobic001G222500--Sobic001G155000 Sobic002G310200 Sobic002G310200 Sobic001G222500--Sobic002G310200 Sobic001G222500--Sobic009G126400 Sobic001G222500--Sobic009G040600 Sobic001G222500--Sobic002G006900 Sobic001G222500--Sobic003G052200 Sobic001G222500--Sobic007G096000 Sobic009G040600--Sobic004G009600 Sobic009G040600--Sobic002G006900 Sobic009G040600--Sobic008G047800 Sobic009G040600--Sobic004G208900 Sobic005G112300 Sobic005G112300 Sobic009G040600--Sobic005G112300 Sobic007G065400 Sobic007G065400 Sobic009G040600--Sobic007G065400 Sobic009G040600--Sobic008G028700 Sobic009G040600--Sobic002G309600 Sobic009G040600--Sobic009G126400 Sobic003G184699 Sobic003G184699 Sobic008G162900--Sobic003G184699 Sobic008G162900--Sobic009G126400 Sobic008G162900--Sobic008G047800 Sobic001G407200 Sobic001G407200 Sobic008G162900--Sobic001G407200 Sobic005G013200 Sobic005G013200 Sobic008G162900--Sobic005G013200 Sobic008G162900--Sobic003G052200 Sobic006G216800 Sobic006G216800 Sobic008G162900--Sobic006G216800 Sobic008G162900--Sobic001G222500 Sobic002G343901 Sobic002G343901 Sobic008G162900--Sobic002G343901 Sobic008G028700--Sobic010G279450 Sobic008G028700--Sobic009G040600 Sobic008G028700--Sobic004G009600 Sobic004G258700 Sobic004G258700 Sobic008G028700--Sobic004G258700 Sobic008G028700--Sobic007G065400 Sobic008G028700--Sobic010G139000 Sobic008G028700--Sobic002G006900 Sobic002G145101 Sobic002G145101 Sobic008G028700--Sobic002G145101 Sobic008G028700--Sobic008G113100 Sobic004G009600--Sobic009G040600 Sobic004G009600--Sobic008G028700 Sobic009G260500 Sobic009G260500 Sobic004G009600--Sobic009G260500 Sobic004G009600--Sobic010G279450 Sobic004G009600--Sobic002G309600 Sobic007G117400 Sobic007G117400 Sobic004G009600--Sobic007G117400 Sobic003G293200 Sobic003G293200 Sobic004G009600--Sobic003G293200 Sobic001G363500 Sobic001G363500 Sobic004G009600--Sobic001G363500 Sobic004G009600--Sobic010G277500 Sobic010G279450--Sobic005G112300 Sobic010G279450--Sobic010G139000 Sobic002G405800 Sobic002G405800 Sobic010G279450--Sobic002G405800 Sobic004G314000 Sobic004G314000 Sobic010G279450--Sobic004G314000 Sobic003G059750 Sobic003G059750 Sobic010G279450--Sobic003G059750 Sobic010G279450--Sobic008G028700 Sobic010G279450--Sobic001G363500 Sobic010G279450--Sobic004G009600 Sobic010G247800 Sobic010G247800 Sobic010G279450--Sobic010G247800 Sobic004G039200 Sobic004G039200 Sobic009G024000--Sobic004G039200 Sobic007G161000 Sobic007G161000 Sobic009G024000--Sobic007G161000 Sobic009G024000--Sobic008G028700 Sobic009G024000--Sobic008G113100 Sobic009G024000--Sobic007G117400 Sobic009G024000--Sobic009G040600 Sobic009G024000--Sobic004G009600 Sobic009G024000--Sobic002G309600 Sobic003G101500 Sobic003G101500 Sobic009G024000--Sobic003G101500
Octagon: transcription factors


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