Gene annotation
Transcriptome id Sobic.008G162900.1,Sobic.008G162900.2
Synonym Sb08g020920, ATPEX2, PEX2, TED3
Functional annotation peroxisome assembly protein, putative, expressed
UniProt C5YRI9 , C5YRH9
Pfam PF04757 PF00097 PF04757
Panther DB -
NCBI CDD KOG2879; Predicted E3 ubiquitin ligase
KEGG Orthology K06664; PEX2, peroxin-2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G79810 : Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein
RAP-DB (Rice) LOC_Os05g19480.1 : peroxisome assembly protein, putative, expressed
MaizeGDB (Corn) Zm00025a004654
Brachypodium PNT66804 , PNT66805
Barley HORVU7Hr1G072200.2 , HORVU7Hr1G072200.3 , HORVU7Hr1G072200.1 , HORVU7Hr1G072200.4 , HORVU7Hr1G072200.5
Wheat TraesCS7B02G204300 , TraesCS7B02G204300 , TraesCS7D02G299400 , TraesCS7A02G303900
Populus PNT43738 , PNT43737 , PNT43736 , PNT55312 , PNT55313 , PNT55314


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cDNA sequences
Sobic.008G162900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G184699 - -
2 Sobic.009G126400 glycine-rich protein, putative, expressed K14845: RAI1, RAT1-interacting protein
3 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
4 Sobic.001G407200 SacI homology domain containing protein, expressed -
5 Sobic.005G013200 BAH domain containing protein, expressed -
6 Sobic.003G052200 G-patch domain containing protein, expressed -
7 Sobic.006G216800 AAA family ATPase, putative, expressed K13339: PEX6, peroxin-6
8 Sobic.001G222500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
9 Sobic.002G343901 - -
10 Sobic.005G027400 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
11 Sobic.004G039700 OsFBX188 - F-box domain containing protein, expressed -
12 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
13 Sobic.004G208900 RNA-binding protein Luc7-like, putative, expressed -
14 Sobic.002G133400 CTR1-like protein kinase, putative, expressed K14510: serine/threonine-protein kinase CTR1
15 Sobic.008G113100 protein binding protein, putative, expressed -
16 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
17 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
18 Sobic.010G136600 - -
19 Sobic.008G028700 SET domain containing protein, expressed -
20 Sobic.010G129200 - -


Gene co-expression network
sample Sobic008G162900 Sobic008G162900 Sobic003G184699 Sobic003G184699 Sobic008G162900--Sobic003G184699 Sobic009G126400 Sobic009G126400 Sobic008G162900--Sobic009G126400 Sobic008G047800 Sobic008G047800 Sobic008G162900--Sobic008G047800 Sobic001G407200 Sobic001G407200 Sobic008G162900--Sobic001G407200 Sobic005G013200 Sobic005G013200 Sobic008G162900--Sobic005G013200 Sobic003G052200 Sobic003G052200 Sobic008G162900--Sobic003G052200 Sobic006G216800 Sobic006G216800 Sobic008G162900--Sobic006G216800 Sobic001G222500 Sobic001G222500 Sobic008G162900--Sobic001G222500 Sobic002G343901 Sobic002G343901 Sobic008G162900--Sobic002G343901 Sobic003G184699--Sobic008G162900 Sobic003G184699--Sobic008G047800 Sobic005G027400 Sobic005G027400 Sobic003G184699--Sobic005G027400 Sobic003G184699--Sobic009G126400 Sobic010G101800 Sobic010G101800 Sobic003G184699--Sobic010G101800 Sobic007G167500 Sobic007G167500 Sobic003G184699--Sobic007G167500 Sobic003G443100 Sobic003G443100 Sobic003G184699--Sobic003G443100 Sobic001G083400 Sobic001G083400 Sobic003G184699--Sobic001G083400 Sobic002G309600 Sobic002G309600 Sobic003G184699--Sobic002G309600 Sobic009G126400--Sobic003G052200 Sobic009G040600 Sobic009G040600 Sobic009G126400--Sobic009G040600 Sobic009G126400--Sobic008G047800 Sobic003G280800 Sobic003G280800 Sobic009G126400--Sobic003G280800 Sobic009G126400--Sobic001G222500 Sobic009G126400--Sobic008G162900 Sobic007G096000 Sobic007G096000 Sobic009G126400--Sobic007G096000 Sobic004G208900 Sobic004G208900 Sobic009G126400--Sobic004G208900 Sobic009G126400--Sobic002G309600 Sobic002G006900 Sobic002G006900 Sobic008G047800--Sobic002G006900 Sobic004G084300 Sobic004G084300 Sobic008G047800--Sobic004G084300 Sobic001G512700 Sobic001G512700 Sobic008G047800--Sobic001G512700 Sobic001G155000 Sobic001G155000 Sobic008G047800--Sobic001G155000 Sobic008G047800--Sobic009G040600 Sobic007G011300 Sobic007G011300 Sobic008G047800--Sobic007G011300 Sobic007G217000 Sobic007G217000 Sobic008G047800--Sobic007G217000 Sobic004G274200 Sobic004G274200 Sobic008G047800--Sobic004G274200 Sobic008G047800--Sobic002G309600 Sobic009G210500 Sobic009G210500 Sobic001G407200--Sobic009G210500 Sobic001G407200--Sobic008G162900 Sobic001G407200--Sobic005G013200 Sobic002G144933 Sobic002G144933 Sobic001G407200--Sobic002G144933 Sobic010G129200 Sobic010G129200 Sobic001G407200--Sobic010G129200 Sobic010G277500 Sobic010G277500 Sobic001G407200--Sobic010G277500 Sobic001G407200--Sobic009G126400 Sobic001G407200--Sobic004G084300 Sobic001G407200--Sobic008G047800 Sobic002G103600 Sobic002G103600 Sobic005G013200--Sobic002G103600 Sobic005G013200--Sobic010G129200 Sobic005G013200--Sobic008G162900 Sobic005G013200--Sobic001G407200 Sobic005G013200--Sobic001G222500 Sobic002G408200 Sobic002G408200 Sobic005G013200--Sobic002G408200 Sobic008G028700 Sobic008G028700 Sobic005G013200--Sobic008G028700 Sobic001G251700 Sobic001G251700 Sobic005G013200--Sobic001G251700 Sobic005G013200--Sobic004G084300 Sobic003G052200--Sobic009G126400 Sobic003G052200--Sobic004G208900 Sobic003G052200--Sobic001G222500 Sobic003G052200--Sobic009G040600 Sobic003G052200--Sobic008G162900 Sobic003G052200--Sobic008G028700 Sobic004G009600 Sobic004G009600 Sobic003G052200--Sobic004G009600 Sobic010G279450 Sobic010G279450 Sobic003G052200--Sobic010G279450 Sobic009G024000 Sobic009G024000 Sobic003G052200--Sobic009G024000 Sobic002G133400 Sobic002G133400 Sobic006G216800--Sobic002G133400 Sobic007G116200 Sobic007G116200 Sobic006G216800--Sobic007G116200 Sobic006G216800--Sobic002G309600 Sobic002G134200 Sobic002G134200 Sobic006G216800--Sobic002G134200 Sobic003G332800 Sobic003G332800 Sobic006G216800--Sobic003G332800 Sobic005G112300 Sobic005G112300 Sobic006G216800--Sobic005G112300 Sobic006G216800--Sobic003G280800 Sobic010G139000 Sobic010G139000 Sobic006G216800--Sobic010G139000 Sobic006G216800--Sobic010G277500 Sobic001G222500--Sobic004G084300 Sobic001G222500--Sobic008G047800 Sobic001G222500--Sobic001G155000 Sobic002G310200 Sobic002G310200 Sobic001G222500--Sobic002G310200 Sobic001G222500--Sobic009G126400 Sobic001G222500--Sobic009G040600 Sobic001G222500--Sobic002G006900 Sobic001G222500--Sobic003G052200 Sobic001G222500--Sobic007G096000 Sobic002G180666 Sobic002G180666 Sobic002G343901--Sobic002G180666 Sobic002G343901--Sobic006G216800 Sobic009G177500 Sobic009G177500 Sobic002G343901--Sobic009G177500 Sobic003G148000 Sobic003G148000 Sobic002G343901--Sobic003G148000 Sobic001G227200 Sobic001G227200 Sobic002G343901--Sobic001G227200 Sobic002G343901--Sobic008G162900 Sobic004G140600 Sobic004G140600 Sobic002G343901--Sobic004G140600 Sobic002G343901--Sobic002G133400 Sobic002G343901--Sobic005G112300
Octagon: transcription factors


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