Gene annotation
Transcriptome id Sobic.004G039700.1
Synonym Sb04g003420
Functional annotation OsFBX188 - F-box domain containing protein, expressed
UniProt A0A194YMM0
Pfam PF00646
Panther DB PTHR31790 PTHR31790:SF15
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G16220 : F-box and associated interaction domains-containing protein
RAP-DB (Rice) LOC_Os06g07380.1 : OsFBX188 - F-box domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G039700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G096000 expressed protein -
2 Sobic.004G208900 RNA-binding protein Luc7-like, putative, expressed -
3 Sobic.003G280800 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
4 Sobic.008G162900 peroxisome assembly protein, putative, expressed K06664: PEX2, peroxin-2
5 Sobic.010G277500 expressed protein -
6 Sobic.003G176500 - -
7 Sobic.007G161300 VHS and GAT domain containing protein, expressed -
8 Sobic.003G052200 G-patch domain containing protein, expressed -
9 Sobic.007G096600 - -
10 Sobic.003G084900 expressed protein -
11 Sobic.003G372700 expressed protein -
12 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
13 Sobic.003G148000 zinc finger, C3HC4 type domain containing protein, expressed K10666: E3 ubiquitin-protein ligase RNF5
14 Sobic.005G013200 BAH domain containing protein, expressed -
15 Sobic.009G104201 - -
16 Sobic.002G144966 - K02997: RP-S9e, small subunit ribosomal protein S9e
17 Sobic.010G028800 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -
18 Sobic.001G222500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
19 Sobic.006G032500 - -
20 Sobic.002G053000 expressed protein -


Gene co-expression network
sample Sobic004G039700 Sobic004G039700 Sobic007G096000 Sobic007G096000 Sobic004G039700--Sobic007G096000 Sobic004G208900 Sobic004G208900 Sobic004G039700--Sobic004G208900 Sobic003G280800 Sobic003G280800 Sobic004G039700--Sobic003G280800 Sobic008G162900 Sobic008G162900 Sobic004G039700--Sobic008G162900 Sobic010G277500 Sobic010G277500 Sobic004G039700--Sobic010G277500 Sobic003G176500 Sobic003G176500 Sobic004G039700--Sobic003G176500 Sobic007G161300 Sobic007G161300 Sobic004G039700--Sobic007G161300 Sobic003G052200 Sobic003G052200 Sobic004G039700--Sobic003G052200 Sobic007G096600 Sobic007G096600 Sobic004G039700--Sobic007G096600 Sobic007G096000--Sobic003G280800 Sobic003G445400 Sobic003G445400 Sobic007G096000--Sobic003G445400 Sobic007G096000--Sobic004G039700 Sobic009G126400 Sobic009G126400 Sobic007G096000--Sobic009G126400 Sobic003G084900 Sobic003G084900 Sobic007G096000--Sobic003G084900 Sobic001G474600 Sobic001G474600 Sobic007G096000--Sobic001G474600 Sobic001G222500 Sobic001G222500 Sobic007G096000--Sobic001G222500 Sobic002G310200 Sobic002G310200 Sobic007G096000--Sobic002G310200 Sobic009G000500 Sobic009G000500 Sobic007G096000--Sobic009G000500 Sobic009G040600 Sobic009G040600 Sobic004G208900--Sobic009G040600 Sobic004G208900--Sobic010G277500 Sobic004G208900--Sobic003G052200 Sobic010G139000 Sobic010G139000 Sobic004G208900--Sobic010G139000 Sobic008G113100 Sobic008G113100 Sobic004G208900--Sobic008G113100 Sobic002G006900 Sobic002G006900 Sobic004G208900--Sobic002G006900 Sobic008G028700 Sobic008G028700 Sobic004G208900--Sobic008G028700 Sobic004G208900--Sobic003G280800 Sobic004G208900--Sobic009G126400 Sobic002G309600 Sobic002G309600 Sobic003G280800--Sobic002G309600 Sobic001G071400 Sobic001G071400 Sobic003G280800--Sobic001G071400 Sobic002G134200 Sobic002G134200 Sobic003G280800--Sobic002G134200 Sobic006G209850 Sobic006G209850 Sobic003G280800--Sobic006G209850 Sobic003G119000 Sobic003G119000 Sobic003G280800--Sobic003G119000 Sobic003G280800--Sobic001G474600 Sobic007G117400 Sobic007G117400 Sobic003G280800--Sobic007G117400 Sobic006G216800 Sobic006G216800 Sobic003G280800--Sobic006G216800 Sobic003G372700 Sobic003G372700 Sobic003G280800--Sobic003G372700 Sobic003G184699 Sobic003G184699 Sobic008G162900--Sobic003G184699 Sobic008G162900--Sobic009G126400 Sobic008G047800 Sobic008G047800 Sobic008G162900--Sobic008G047800 Sobic001G407200 Sobic001G407200 Sobic008G162900--Sobic001G407200 Sobic005G013200 Sobic005G013200 Sobic008G162900--Sobic005G013200 Sobic008G162900--Sobic003G052200 Sobic008G162900--Sobic006G216800 Sobic008G162900--Sobic001G222500 Sobic002G343901 Sobic002G343901 Sobic008G162900--Sobic002G343901 Sobic010G277500--Sobic004G208900 Sobic010G277500--Sobic006G209850 Sobic007G065400 Sobic007G065400 Sobic010G277500--Sobic007G065400 Sobic009G260500 Sobic009G260500 Sobic010G277500--Sobic009G260500 Sobic010G277500--Sobic003G280800 Sobic004G009600 Sobic004G009600 Sobic010G277500--Sobic004G009600 Sobic010G277500--Sobic008G028700 Sobic004G258700 Sobic004G258700 Sobic010G277500--Sobic004G258700 Sobic010G277500--Sobic006G216800 Sobic003G176500--Sobic007G096600 Sobic002G243900 Sobic002G243900 Sobic003G176500--Sobic002G243900 Sobic003G176500--Sobic002G006900 Sobic005G144400 Sobic005G144400 Sobic003G176500--Sobic005G144400 Sobic001G214300 Sobic001G214300 Sobic003G176500--Sobic001G214300 Sobic003G200200 Sobic003G200200 Sobic003G176500--Sobic003G200200 Sobic007G178700 Sobic007G178700 Sobic003G176500--Sobic007G178700 Sobic003G148000 Sobic003G148000 Sobic003G176500--Sobic003G148000 Sobic003G268300 Sobic003G268300 Sobic003G176500--Sobic003G268300 Sobic002G180666 Sobic002G180666 Sobic007G161300--Sobic002G180666 Sobic006G032500 Sobic006G032500 Sobic007G161300--Sobic006G032500 Sobic004G007100 Sobic004G007100 Sobic007G161300--Sobic004G007100 Sobic006G048500 Sobic006G048500 Sobic007G161300--Sobic006G048500 Sobic007G161300--Sobic008G028700 Sobic007G161300--Sobic003G372700 Sobic007G161300--Sobic004G039700 Sobic007G161300--Sobic003G148000 Sobic001G456900 Sobic001G456900 Sobic007G161300--Sobic001G456900 Sobic003G052200--Sobic009G126400 Sobic003G052200--Sobic004G208900 Sobic003G052200--Sobic001G222500 Sobic003G052200--Sobic009G040600 Sobic003G052200--Sobic008G162900 Sobic003G052200--Sobic008G028700 Sobic003G052200--Sobic004G009600 Sobic010G279450 Sobic010G279450 Sobic003G052200--Sobic010G279450 Sobic009G024000 Sobic009G024000 Sobic003G052200--Sobic009G024000 Sobic007G096600--Sobic002G243900 Sobic007G096600--Sobic003G268300 Sobic007G096600--Sobic003G176500 Sobic001G274200 Sobic001G274200 Sobic007G096600--Sobic001G274200 Sobic007G096600--Sobic003G200200 Sobic007G096600--Sobic005G144400 Sobic007G096600--Sobic003G148000 Sobic003G332800 Sobic003G332800 Sobic007G096600--Sobic003G332800 Sobic001G420200 Sobic001G420200 Sobic007G096600--Sobic001G420200
Octagon: transcription factors


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