Gene annotation
Transcriptome id Sobic.004G208900.1
Synonym Sb04g025450
Functional annotation RNA-binding protein Luc7-like, putative, expressed
UniProt C5XX85
Pfam PF03194
Panther DB PTHR12375 PTHR12375:SF32
NCBI CDD KOG0796; Spliceosome subunit
KEGG Orthology -
Gene Ontology GO:0006376; mRNA splice site selection GO:0005685U1 snRNP GO:0003729mRNA binding


Orthologs (automatic annotation)
TAIR AT5G17440 : LUC7 related protein
RAP-DB (Rice) LOC_Os02g39300.1 : RNA-binding protein Luc7-like, putative, expressed
MaizeGDB (Corn) Zm00025a016350 , Zm00025a021246
Brachypodium KQK12178 , KQK12176 , KQK12177
Barley HORVU5Hr1G120260.2 , HORVU5Hr1G120260.8 , HORVU5Hr1G120260.9 , HORVU5Hr1G120260.6 , HORVU5Hr1G120260.7 , HORVU5Hr1G120260.4 , HORVU5Hr1G120260.3 , HORVU5Hr1G120260.1 , HORVU5Hr1G120260.14 , HORVU5Hr1G120260.15 , HORVU5Hr1G120260.16 , HORVU5Hr1G120260.11 , HORVU5Hr1G120260.12 , HORVU5Hr1G120260.13 , HORVU5Hr1G120260.18 , HORVU5Hr1G120260.19 , HORVU6Hr1G055580.8 , HORVU6Hr1G055580.3 , HORVU6Hr1G055580.2 , HORVU6Hr1G055580.1 , HORVU6Hr1G055580.7 , HORVU6Hr1G055580.6 , HORVU6Hr1G055580.5 , HORVU6Hr1G055580.4 , HORVU5Hr1G120260.20
Wheat TraesCS4A02G342700 , TraesCS4A02G342700 , TraesCS5D02G530300 , TraesCS5D02G530300 , TraesCS5D02G530300 , TraesCS5B02G532000 , TraesCS5B02G532000 , TraesCS6B02G247200 , TraesCS6B02G247200
Populus -


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cDNA sequences
Sobic.004G208900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G040600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
2 Sobic.010G277500 expressed protein -
3 Sobic.003G052200 G-patch domain containing protein, expressed -
4 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1
5 Sobic.008G113100 protein binding protein, putative, expressed -
6 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
7 Sobic.008G028700 SET domain containing protein, expressed -
8 Sobic.003G280800 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
9 Sobic.009G126400 glycine-rich protein, putative, expressed K14845: RAI1, RAT1-interacting protein
10 Sobic.004G009600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
11 Sobic.001G363500 DIRP family protein, putative, expressed -
12 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
13 Sobic.007G117400 expressed protein -
14 Sobic.007G161000 RecF/RecN/SMC N terminal domain containing protein, expressed K06636: structural maintenance of chromosome 1
15 Sobic.003G372700 expressed protein -
16 Sobic.004G314000 expressed protein -
17 Sobic.004G039700 OsFBX188 - F-box domain containing protein, expressed -
18 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
19 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
20 Sobic.006G209850 - -


Gene co-expression network
sample Sobic004G208900 Sobic004G208900 Sobic009G040600 Sobic009G040600 Sobic004G208900--Sobic009G040600 Sobic010G277500 Sobic010G277500 Sobic004G208900--Sobic010G277500 Sobic003G052200 Sobic003G052200 Sobic004G208900--Sobic003G052200 Sobic010G139000 Sobic010G139000 Sobic004G208900--Sobic010G139000 Sobic008G113100 Sobic008G113100 Sobic004G208900--Sobic008G113100 Sobic002G006900 Sobic002G006900 Sobic004G208900--Sobic002G006900 Sobic008G028700 Sobic008G028700 Sobic004G208900--Sobic008G028700 Sobic003G280800 Sobic003G280800 Sobic004G208900--Sobic003G280800 Sobic009G126400 Sobic009G126400 Sobic004G208900--Sobic009G126400 Sobic004G009600 Sobic004G009600 Sobic009G040600--Sobic004G009600 Sobic009G040600--Sobic002G006900 Sobic008G047800 Sobic008G047800 Sobic009G040600--Sobic008G047800 Sobic009G040600--Sobic004G208900 Sobic005G112300 Sobic005G112300 Sobic009G040600--Sobic005G112300 Sobic007G065400 Sobic007G065400 Sobic009G040600--Sobic007G065400 Sobic009G040600--Sobic008G028700 Sobic002G309600 Sobic002G309600 Sobic009G040600--Sobic002G309600 Sobic009G040600--Sobic009G126400 Sobic010G277500--Sobic004G208900 Sobic006G209850 Sobic006G209850 Sobic010G277500--Sobic006G209850 Sobic010G277500--Sobic007G065400 Sobic009G260500 Sobic009G260500 Sobic010G277500--Sobic009G260500 Sobic010G277500--Sobic003G280800 Sobic010G277500--Sobic004G009600 Sobic010G277500--Sobic008G028700 Sobic004G258700 Sobic004G258700 Sobic010G277500--Sobic004G258700 Sobic006G216800 Sobic006G216800 Sobic010G277500--Sobic006G216800 Sobic003G052200--Sobic009G126400 Sobic003G052200--Sobic004G208900 Sobic001G222500 Sobic001G222500 Sobic003G052200--Sobic001G222500 Sobic003G052200--Sobic009G040600 Sobic008G162900 Sobic008G162900 Sobic003G052200--Sobic008G162900 Sobic003G052200--Sobic008G028700 Sobic003G052200--Sobic004G009600 Sobic010G279450 Sobic010G279450 Sobic003G052200--Sobic010G279450 Sobic009G024000 Sobic009G024000 Sobic003G052200--Sobic009G024000 Sobic004G314000 Sobic004G314000 Sobic010G139000--Sobic004G314000 Sobic010G139000--Sobic005G112300 Sobic010G139000--Sobic010G279450 Sobic010G206900 Sobic010G206900 Sobic010G139000--Sobic010G206900 Sobic001G311500 Sobic001G311500 Sobic010G139000--Sobic001G311500 Sobic001G036050 Sobic001G036050 Sobic010G139000--Sobic001G036050 Sobic010G112100 Sobic010G112100 Sobic010G139000--Sobic010G112100 Sobic010G010700 Sobic010G010700 Sobic010G139000--Sobic010G010700 Sobic005G008800 Sobic005G008800 Sobic010G139000--Sobic005G008800 Sobic008G113100--Sobic004G258700 Sobic008G113100--Sobic008G028700 Sobic005G064000 Sobic005G064000 Sobic008G113100--Sobic005G064000 Sobic008G113100--Sobic007G065400 Sobic001G456900 Sobic001G456900 Sobic008G113100--Sobic001G456900 Sobic008G113100--Sobic009G024000 Sobic008G113100--Sobic009G040600 Sobic008G113100--Sobic004G208900 Sobic004G039200 Sobic004G039200 Sobic008G113100--Sobic004G039200 Sobic002G006900--Sobic008G047800 Sobic002G006900--Sobic007G065400 Sobic003G200200 Sobic003G200200 Sobic002G006900--Sobic003G200200 Sobic003G372700 Sobic003G372700 Sobic002G006900--Sobic003G372700 Sobic002G006900--Sobic009G040600 Sobic001G155000 Sobic001G155000 Sobic002G006900--Sobic001G155000 Sobic002G006900--Sobic002G309600 Sobic001G214300 Sobic001G214300 Sobic002G006900--Sobic001G214300 Sobic001G512700 Sobic001G512700 Sobic002G006900--Sobic001G512700 Sobic008G028700--Sobic010G279450 Sobic008G028700--Sobic009G040600 Sobic008G028700--Sobic004G009600 Sobic008G028700--Sobic004G258700 Sobic008G028700--Sobic007G065400 Sobic008G028700--Sobic010G139000 Sobic008G028700--Sobic002G006900 Sobic002G145101 Sobic002G145101 Sobic008G028700--Sobic002G145101 Sobic008G028700--Sobic008G113100 Sobic003G280800--Sobic002G309600 Sobic001G071400 Sobic001G071400 Sobic003G280800--Sobic001G071400 Sobic002G134200 Sobic002G134200 Sobic003G280800--Sobic002G134200 Sobic003G280800--Sobic006G209850 Sobic003G119000 Sobic003G119000 Sobic003G280800--Sobic003G119000 Sobic001G474600 Sobic001G474600 Sobic003G280800--Sobic001G474600 Sobic007G117400 Sobic007G117400 Sobic003G280800--Sobic007G117400 Sobic003G280800--Sobic006G216800 Sobic003G280800--Sobic003G372700 Sobic009G126400--Sobic003G052200 Sobic009G126400--Sobic009G040600 Sobic009G126400--Sobic008G047800 Sobic009G126400--Sobic003G280800 Sobic009G126400--Sobic001G222500 Sobic009G126400--Sobic008G162900 Sobic007G096000 Sobic007G096000 Sobic009G126400--Sobic007G096000 Sobic009G126400--Sobic004G208900 Sobic009G126400--Sobic002G309600
Octagon: transcription factors


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