Gene annotation
Transcriptome id Sobic.008G113100.1
Synonym
Functional annotation protein binding protein, putative, expressed
UniProt A0A1B6PD23
Pfam PF00628
Panther DB PTHR10615
NCBI CDD KOG4443; Putative transcription factor HALR/MLL3, involved in embryonic development
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G08020 : PHD finger family protein
RAP-DB (Rice) LOC_Os12g34330.1 : protein binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a025553 , Zm00025a054400
Brachypodium KQJ86533 , PNT62631 , PNT62630
Barley HORVU5Hr1G027160.6 , HORVU5Hr1G027160.3 , HORVU5Hr1G027160.2 , HORVU5Hr1G027160.1 , HORVU5Hr1G027160.5 , HORVU5Hr1G027160.4
Wheat TraesCS5D02G112100 , TraesCS5A02G099800 , TraesCS5B02G105000
Populus -


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cDNA sequences
Sobic.008G113100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G258700 PHD-finger family protein, expressed -
2 Sobic.008G028700 SET domain containing protein, expressed -
3 Sobic.005G064000 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
4 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11
5 Sobic.001G456900 expressed protein -
6 Sobic.009G024000 nuclear factor related to kappa-B-binding protein, related, putative, expressed K11671: NFRKB, nuclear factor related to kappa-B-binding protein
7 Sobic.009G040600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
8 Sobic.004G208900 RNA-binding protein Luc7-like, putative, expressed -
9 Sobic.004G039200 splicing factor 3B subunit 1, putative, expressed K12828: SF3B1, splicing factor 3B subunit 1
10 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
11 Sobic.007G161000 RecF/RecN/SMC N terminal domain containing protein, expressed K06636: structural maintenance of chromosome 1
12 Sobic.003G101500 dnaJ domain containing protein, expressed -
13 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
14 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1
15 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
16 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
17 Sobic.003G148000 zinc finger, C3HC4 type domain containing protein, expressed K10666: E3 ubiquitin-protein ligase RNF5
18 Sobic.003G389200 Rad21 / Rec8 like protein, putative, expressed K06670: SCC1, MCD1, cohesin complex subunit SCC1
19 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
20 Sobic.007G117400 expressed protein -


Gene co-expression network
sample Sobic008G113100 Sobic008G113100 Sobic004G258700 Sobic004G258700 Sobic008G113100--Sobic004G258700 Sobic008G028700 Sobic008G028700 Sobic008G113100--Sobic008G028700 Sobic005G064000 Sobic005G064000 Sobic008G113100--Sobic005G064000 Sobic007G065400 Sobic007G065400 Sobic008G113100--Sobic007G065400 Sobic001G456900 Sobic001G456900 Sobic008G113100--Sobic001G456900 Sobic009G024000 Sobic009G024000 Sobic008G113100--Sobic009G024000 Sobic009G040600 Sobic009G040600 Sobic008G113100--Sobic009G040600 Sobic004G208900 Sobic004G208900 Sobic008G113100--Sobic004G208900 Sobic004G039200 Sobic004G039200 Sobic008G113100--Sobic004G039200 Sobic004G258700--Sobic008G113100 Sobic004G258700--Sobic008G028700 Sobic004G258700--Sobic001G456900 Sobic003G148000 Sobic003G148000 Sobic004G258700--Sobic003G148000 Sobic003G101500 Sobic003G101500 Sobic004G258700--Sobic003G101500 Sobic010G277500 Sobic010G277500 Sobic004G258700--Sobic010G277500 Sobic004G258700--Sobic007G065400 Sobic007G161000 Sobic007G161000 Sobic004G258700--Sobic007G161000 Sobic004G258700--Sobic009G040600 Sobic010G279450 Sobic010G279450 Sobic008G028700--Sobic010G279450 Sobic008G028700--Sobic009G040600 Sobic004G009600 Sobic004G009600 Sobic008G028700--Sobic004G009600 Sobic008G028700--Sobic004G258700 Sobic008G028700--Sobic007G065400 Sobic010G139000 Sobic010G139000 Sobic008G028700--Sobic010G139000 Sobic002G006900 Sobic002G006900 Sobic008G028700--Sobic002G006900 Sobic002G145101 Sobic002G145101 Sobic008G028700--Sobic002G145101 Sobic008G028700--Sobic008G113100 Sobic005G064000--Sobic008G113100 Sobic010G112100 Sobic010G112100 Sobic005G064000--Sobic010G112100 Sobic002G264200 Sobic002G264200 Sobic005G064000--Sobic002G264200 Sobic007G159900 Sobic007G159900 Sobic005G064000--Sobic007G159900 Sobic005G064000--Sobic007G065400 Sobic010G069100 Sobic010G069100 Sobic005G064000--Sobic010G069100 Sobic003G360400 Sobic003G360400 Sobic005G064000--Sobic003G360400 Sobic006G118700 Sobic006G118700 Sobic005G064000--Sobic006G118700 Sobic002G154000 Sobic002G154000 Sobic005G064000--Sobic002G154000 Sobic007G065400--Sobic002G006900 Sobic002G191800 Sobic002G191800 Sobic007G065400--Sobic002G191800 Sobic008G009700 Sobic008G009700 Sobic007G065400--Sobic008G009700 Sobic007G065400--Sobic009G040600 Sobic004G145500 Sobic004G145500 Sobic007G065400--Sobic004G145500 Sobic009G210500 Sobic009G210500 Sobic007G065400--Sobic009G210500 Sobic003G119000 Sobic003G119000 Sobic007G065400--Sobic003G119000 Sobic003G372700 Sobic003G372700 Sobic007G065400--Sobic003G372700 Sobic007G065400--Sobic008G028700 Sobic001G036050 Sobic001G036050 Sobic001G456900--Sobic001G036050 Sobic001G456900--Sobic010G139000 Sobic001G456900--Sobic004G258700 Sobic001G456900--Sobic008G113100 Sobic001G456900--Sobic008G028700 Sobic002G180666 Sobic002G180666 Sobic001G456900--Sobic002G180666 Sobic001G311500 Sobic001G311500 Sobic001G456900--Sobic001G311500 Sobic003G398700 Sobic003G398700 Sobic001G456900--Sobic003G398700 Sobic001G456900--Sobic003G101500 Sobic009G024000--Sobic004G039200 Sobic009G024000--Sobic007G161000 Sobic009G024000--Sobic008G028700 Sobic009G024000--Sobic008G113100 Sobic007G117400 Sobic007G117400 Sobic009G024000--Sobic007G117400 Sobic009G024000--Sobic009G040600 Sobic009G024000--Sobic004G009600 Sobic002G309600 Sobic002G309600 Sobic009G024000--Sobic002G309600 Sobic009G024000--Sobic003G101500 Sobic009G040600--Sobic004G009600 Sobic009G040600--Sobic002G006900 Sobic008G047800 Sobic008G047800 Sobic009G040600--Sobic008G047800 Sobic009G040600--Sobic004G208900 Sobic005G112300 Sobic005G112300 Sobic009G040600--Sobic005G112300 Sobic009G040600--Sobic007G065400 Sobic009G040600--Sobic008G028700 Sobic009G040600--Sobic002G309600 Sobic009G126400 Sobic009G126400 Sobic009G040600--Sobic009G126400 Sobic004G208900--Sobic009G040600 Sobic004G208900--Sobic010G277500 Sobic003G052200 Sobic003G052200 Sobic004G208900--Sobic003G052200 Sobic004G208900--Sobic010G139000 Sobic004G208900--Sobic008G113100 Sobic004G208900--Sobic002G006900 Sobic004G208900--Sobic008G028700 Sobic003G280800 Sobic003G280800 Sobic004G208900--Sobic003G280800 Sobic004G208900--Sobic009G126400 Sobic004G039200--Sobic009G024000 Sobic004G039200--Sobic003G101500 Sobic004G039200--Sobic007G161000 Sobic004G039200--Sobic007G065400 Sobic004G039200--Sobic008G113100 Sobic004G039200--Sobic008G028700 Sobic004G039200--Sobic008G009700 Sobic004G039200--Sobic007G117400 Sobic007G054400 Sobic007G054400 Sobic004G039200--Sobic007G054400
Octagon: transcription factors


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