Gene annotation
Transcriptome id Sobic.005G064000.2,Sobic.005G064000.1
Synonym CHB4, ATSWI3C, SWI3C
Functional annotation SWIRM domain containing protein, expressed
UniProt A0A1Z5RHL3 , A0A1Z5RGY6
Pfam PF00249 PF04433 PF16495
Panther DB PTHR12802 PTHR12802:SF41
NCBI CDD KOG1279; Chromatin remodeling factor subunit and related transcription factors
KEGG Orthology K11649; SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G21700 : SWITCH/sucrose nonfermenting 3C
RAP-DB (Rice) LOC_Os11g08080.1 : SWIRM domain containing protein, expressed
MaizeGDB (Corn) Zm00025a034040
Brachypodium KQJ92018 , KQJ92019
Barley HORVU5Hr1G037060.10 , HORVU5Hr1G037060.9 , HORVU5Hr1G037060.8 , HORVU5Hr1G037060.3 , HORVU5Hr1G037060.2 , HORVU5Hr1G037060.1 , HORVU5Hr1G037060.7 , HORVU5Hr1G037060.6 , HORVU5Hr1G037060.5 , HORVU5Hr1G037060.4
Wheat TraesCS5A02G113500 , TraesCS5A02G113500 , TraesCS5B02G119800 , TraesCS5B02G119800 , TraesCS5D02G128700
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.005G064000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G113100 protein binding protein, putative, expressed -
2 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
3 Sobic.002G264200 RNA recognition motif containing protein, expressed -
4 Sobic.007G159900 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
5 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11
6 Sobic.010G069100 expressed protein -
7 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
8 Sobic.006G118700 MYB family transcription factor, putative, expressed -
9 Sobic.002G154000 EDM2, putative, expressed -
10 Sobic.001G456900 expressed protein -
11 Sobic.007G212300 RNA recognition motif containing protein, putative, expressed -
12 Sobic.009G256300 DNA binding protein, putative, expressed -
13 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
14 Sobic.003G389200 Rad21 / Rec8 like protein, putative, expressed K06670: SCC1, MCD1, cohesin complex subunit SCC1
15 Sobic.009G177500 CCR4-NOT transcription factor, putative, expressed K12605: CNOT2, CCR4-NOT transcription complex subunit 2
16 Sobic.001G354600 SAP domain containing protein, expressed K12875: ACIN1, apoptotic chromatin condensation inducer in the nucleus
17 Sobic.002G366400 histone deacetylase, putative, expressed K11407: histone deacetylase 6
18 Sobic.001G241200 protein kinase domain containing protein, expressed -
19 Sobic.001G311500 N-acetylglucosaminyl transferase component, putative, expressed K03860: PIGQ, phosphatidylinositol N-acetylglucosaminyltransferase subunit Q
20 Sobic.008G028700 SET domain containing protein, expressed -


Gene co-expression network
sample Sobic005G064000 Sobic005G064000 Sobic008G113100 Sobic008G113100 Sobic005G064000--Sobic008G113100 Sobic010G112100 Sobic010G112100 Sobic005G064000--Sobic010G112100 Sobic002G264200 Sobic002G264200 Sobic005G064000--Sobic002G264200 Sobic007G159900 Sobic007G159900 Sobic005G064000--Sobic007G159900 Sobic007G065400 Sobic007G065400 Sobic005G064000--Sobic007G065400 Sobic010G069100 Sobic010G069100 Sobic005G064000--Sobic010G069100 Sobic003G360400 Sobic003G360400 Sobic005G064000--Sobic003G360400 Sobic006G118700 Sobic006G118700 Sobic005G064000--Sobic006G118700 Sobic002G154000 Sobic002G154000 Sobic005G064000--Sobic002G154000 Sobic004G258700 Sobic004G258700 Sobic008G113100--Sobic004G258700 Sobic008G028700 Sobic008G028700 Sobic008G113100--Sobic008G028700 Sobic008G113100--Sobic005G064000 Sobic008G113100--Sobic007G065400 Sobic001G456900 Sobic001G456900 Sobic008G113100--Sobic001G456900 Sobic009G024000 Sobic009G024000 Sobic008G113100--Sobic009G024000 Sobic009G040600 Sobic009G040600 Sobic008G113100--Sobic009G040600 Sobic004G208900 Sobic004G208900 Sobic008G113100--Sobic004G208900 Sobic004G039200 Sobic004G039200 Sobic008G113100--Sobic004G039200 Sobic010G112100--Sobic003G360400 Sobic005G112300 Sobic005G112300 Sobic010G112100--Sobic005G112300 Sobic009G256300 Sobic009G256300 Sobic010G112100--Sobic009G256300 Sobic003G408600 Sobic003G408600 Sobic010G112100--Sobic003G408600 Sobic001G433800 Sobic001G433800 Sobic010G112100--Sobic001G433800 Sobic001G540400 Sobic001G540400 Sobic010G112100--Sobic001G540400 Sobic007G062800 Sobic007G062800 Sobic010G112100--Sobic007G062800 Sobic004G242400 Sobic004G242400 Sobic010G112100--Sobic004G242400 Sobic003G389200 Sobic003G389200 Sobic010G112100--Sobic003G389200 Sobic002G264200--Sobic010G069100 Sobic003G416700 Sobic003G416700 Sobic002G264200--Sobic003G416700 Sobic001G461400 Sobic001G461400 Sobic002G264200--Sobic001G461400 Sobic008G153000 Sobic008G153000 Sobic002G264200--Sobic008G153000 Sobic010G236400 Sobic010G236400 Sobic002G264200--Sobic010G236400 Sobic002G071500 Sobic002G071500 Sobic002G264200--Sobic002G071500 Sobic002G264200--Sobic007G065400 Sobic002G153700 Sobic002G153700 Sobic002G264200--Sobic002G153700 Sobic002G264200--Sobic006G118700 Sobic007G159900--Sobic003G360400 Sobic004G158400 Sobic004G158400 Sobic007G159900--Sobic004G158400 Sobic002G366400 Sobic002G366400 Sobic007G159900--Sobic002G366400 Sobic007G159900--Sobic010G112100 Sobic007G183900 Sobic007G183900 Sobic007G159900--Sobic007G183900 Sobic007G159900--Sobic005G064000 Sobic005G100700 Sobic005G100700 Sobic007G159900--Sobic005G100700 Sobic003G188400 Sobic003G188400 Sobic007G159900--Sobic003G188400 Sobic007G159900--Sobic008G113100 Sobic002G006900 Sobic002G006900 Sobic007G065400--Sobic002G006900 Sobic002G191800 Sobic002G191800 Sobic007G065400--Sobic002G191800 Sobic008G009700 Sobic008G009700 Sobic007G065400--Sobic008G009700 Sobic007G065400--Sobic009G040600 Sobic004G145500 Sobic004G145500 Sobic007G065400--Sobic004G145500 Sobic009G210500 Sobic009G210500 Sobic007G065400--Sobic009G210500 Sobic003G119000 Sobic003G119000 Sobic007G065400--Sobic003G119000 Sobic003G372700 Sobic003G372700 Sobic007G065400--Sobic003G372700 Sobic007G065400--Sobic008G028700 Sobic010G069100--Sobic002G071500 Sobic010G069100--Sobic002G264200 Sobic010G069100--Sobic005G112300 Sobic008G047800 Sobic008G047800 Sobic010G069100--Sobic008G047800 Sobic010G069100--Sobic008G009700 Sobic001G154900 Sobic001G154900 Sobic010G069100--Sobic001G154900 Sobic004G146500 Sobic004G146500 Sobic010G069100--Sobic004G146500 Sobic010G069100--Sobic007G065400 Sobic009G005500 Sobic009G005500 Sobic010G069100--Sobic009G005500 Sobic003G360400--Sobic010G112100 Sobic003G360400--Sobic002G154000 Sobic001G354600 Sobic001G354600 Sobic003G360400--Sobic001G354600 Sobic003G360400--Sobic001G433800 Sobic003G360400--Sobic003G389200 Sobic009G044800 Sobic009G044800 Sobic003G360400--Sobic009G044800 Sobic003G360400--Sobic005G112300 Sobic007G063000 Sobic007G063000 Sobic003G360400--Sobic007G063000 Sobic003G360400--Sobic009G256300 Sobic006G118700--Sobic007G183900 Sobic006G118700--Sobic002G264200 Sobic006G118700--Sobic010G112100 Sobic006G118700--Sobic003G360400 Sobic004G355800 Sobic004G355800 Sobic006G118700--Sobic004G355800 Sobic006G118700--Sobic010G069100 Sobic006G118700--Sobic002G366400 Sobic006G118700--Sobic010G236400 Sobic007G091600 Sobic007G091600 Sobic006G118700--Sobic007G091600 Sobic002G154000--Sobic003G360400 Sobic002G154000--Sobic003G416700 Sobic002G154000--Sobic010G112100 Sobic001G063700 Sobic001G063700 Sobic002G154000--Sobic001G063700 Sobic010G001100 Sobic010G001100 Sobic002G154000--Sobic010G001100 Sobic002G154000--Sobic001G461400 Sobic002G154000--Sobic001G433800 Sobic004G048800 Sobic004G048800 Sobic002G154000--Sobic004G048800 Sobic002G154000--Sobic007G063000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.