Gene annotation
Transcriptome id Sobic.010G112100.3,Sobic.010G112100.1,Sobic.010G112100.2
Synonym PKDM7D, Sb10g009710
Functional annotation transcription factor jumonji, putative, expressed
UniProt A0A194YII6 , A0A1W0VSH5
Pfam PF05964 PF02928 PF02375 PF05965 PF02373
Panther DB PTHR10694 PTHR10694:SF53
NCBI CDD KOG1246; DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain
KEGG Orthology K11446; KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
Gene Ontology GO:0005634; nucleus


Orthologs (automatic annotation)
TAIR AT1G08620 : Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein
RAP-DB (Rice) LOC_Os05g10770.1 : transcription factor jumonji, putative, expressed
MaizeGDB (Corn) Zm00025a012870 , Zm00025a032847 , Zm00025a032851 , Zm00025a032850 , Zm00025a042687
Brachypodium KQK04607
Barley HORVU1Hr1G093770.1 , HORVU1Hr1G093770.3 , HORVU1Hr1G093770.2 , HORVU1Hr1G093770.5 , HORVU1Hr1G093770.4 , HORVU1Hr1G093770.7 , HORVU1Hr1G093770.6 , HORVU1Hr1G093770.9 , HORVU1Hr1G093770.8 , HORVU1Hr1G093770.20 , HORVU1Hr1G093770.22 , HORVU1Hr1G093770.12 , HORVU1Hr1G093770.15 , HORVU1Hr1G093770.14 , HORVU1Hr1G093770.17 , HORVU1Hr1G093770.16 , HORVU1Hr1G093770.11 , HORVU1Hr1G093770.13 , HORVU1Hr1G093770.19 , HORVU1Hr1G093770.18
Wheat TraesCS1A02G430400 , TraesCS1A02G430400 , TraesCS1A02G430400 , TraesCS1A02G430400 , TraesCS1D02G439600 , TraesCS1B02G465100 , TraesCS1B02G465100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
2 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
3 Sobic.009G256300 DNA binding protein, putative, expressed -
4 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
5 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
6 Sobic.001G540400 expressed protein -
7 Sobic.007G062800 SET domain containing protein, expressed -
8 Sobic.004G242400 nuclear-pore anchor, putative, expressed K09291: TPR, MLP1, nucleoprotein TPR
9 Sobic.003G389200 Rad21 / Rec8 like protein, putative, expressed K06670: SCC1, MCD1, cohesin complex subunit SCC1
10 Sobic.009G109200 phosphatidylinositol kinase, putative, expressed K07203: MTOR, FRAP, serine/threonine-protein kinase mTOR
11 Sobic.001G363500 DIRP family protein, putative, expressed -
12 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1
13 Sobic.002G154000 EDM2, putative, expressed -
14 Sobic.002G397500 SAC3/GANP family protein, expressed -
15 Sobic.010G010700 PHD-finger family protein, expressed -
16 Sobic.007G105100 STE_MEK_ste7_MAP2K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04368: MAP2K1, mitogen-activated protein kinase kinase 1
17 Sobic.001G354600 SAP domain containing protein, expressed K12875: ACIN1, apoptotic chromatin condensation inducer in the nucleus
18 Sobic.005G008800 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
19 Sobic.010G123600 WW domain containing protein, expressed -
20 Sobic.001G542400 CCR4-Not complex component, Not1domain containing protein, expressed K12604: CNOT1, CCR4-NOT transcription complex subunit 1


Gene co-expression network
sample Sobic010G112100 Sobic010G112100 Sobic003G360400 Sobic003G360400 Sobic010G112100--Sobic003G360400 Sobic005G112300 Sobic005G112300 Sobic010G112100--Sobic005G112300 Sobic009G256300 Sobic009G256300 Sobic010G112100--Sobic009G256300 Sobic003G408600 Sobic003G408600 Sobic010G112100--Sobic003G408600 Sobic001G433800 Sobic001G433800 Sobic010G112100--Sobic001G433800 Sobic001G540400 Sobic001G540400 Sobic010G112100--Sobic001G540400 Sobic007G062800 Sobic007G062800 Sobic010G112100--Sobic007G062800 Sobic004G242400 Sobic004G242400 Sobic010G112100--Sobic004G242400 Sobic003G389200 Sobic003G389200 Sobic010G112100--Sobic003G389200 Sobic003G360400--Sobic010G112100 Sobic002G154000 Sobic002G154000 Sobic003G360400--Sobic002G154000 Sobic001G354600 Sobic001G354600 Sobic003G360400--Sobic001G354600 Sobic003G360400--Sobic001G433800 Sobic003G360400--Sobic003G389200 Sobic009G044800 Sobic009G044800 Sobic003G360400--Sobic009G044800 Sobic003G360400--Sobic005G112300 Sobic007G063000 Sobic007G063000 Sobic003G360400--Sobic007G063000 Sobic003G360400--Sobic009G256300 Sobic001G363500 Sobic001G363500 Sobic005G112300--Sobic001G363500 Sobic005G112300--Sobic007G062800 Sobic005G112300--Sobic010G112100 Sobic010G139000 Sobic010G139000 Sobic005G112300--Sobic010G139000 Sobic007G105100 Sobic007G105100 Sobic005G112300--Sobic007G105100 Sobic005G112300--Sobic001G540400 Sobic010G010700 Sobic010G010700 Sobic005G112300--Sobic010G010700 Sobic005G008800 Sobic005G008800 Sobic005G112300--Sobic005G008800 Sobic002G071500 Sobic002G071500 Sobic005G112300--Sobic002G071500 Sobic009G256300--Sobic010G112100 Sobic009G256300--Sobic003G389200 Sobic009G256300--Sobic004G242400 Sobic009G256300--Sobic010G010700 Sobic010G123600 Sobic010G123600 Sobic009G256300--Sobic010G123600 Sobic009G256300--Sobic003G360400 Sobic009G109200 Sobic009G109200 Sobic009G256300--Sobic009G109200 Sobic004G276400 Sobic004G276400 Sobic009G256300--Sobic004G276400 Sobic001G542400 Sobic001G542400 Sobic009G256300--Sobic001G542400 Sobic003G408600--Sobic001G540400 Sobic003G408600--Sobic005G008800 Sobic002G397500 Sobic002G397500 Sobic003G408600--Sobic002G397500 Sobic003G408600--Sobic005G112300 Sobic007G163100 Sobic007G163100 Sobic003G408600--Sobic007G163100 Sobic003G408600--Sobic010G112100 Sobic001G058700 Sobic001G058700 Sobic003G408600--Sobic001G058700 Sobic003G408600--Sobic002G071500 Sobic002G045600 Sobic002G045600 Sobic003G408600--Sobic002G045600 Sobic001G433800--Sobic010G112100 Sobic001G433800--Sobic003G360400 Sobic001G433800--Sobic007G063000 Sobic001G433800--Sobic005G112300 Sobic001G433800--Sobic004G242400 Sobic002G133300 Sobic002G133300 Sobic001G433800--Sobic002G133300 Sobic001G433800--Sobic001G363500 Sobic006G252900 Sobic006G252900 Sobic001G433800--Sobic006G252900 Sobic006G041600 Sobic006G041600 Sobic001G433800--Sobic006G041600 Sobic001G289600 Sobic001G289600 Sobic001G540400--Sobic001G289600 Sobic001G540400--Sobic003G408600 Sobic001G540400--Sobic007G062800 Sobic001G540400--Sobic005G008800 Sobic004G034900 Sobic004G034900 Sobic001G540400--Sobic004G034900 Sobic001G540400--Sobic005G112300 Sobic003G422500 Sobic003G422500 Sobic001G540400--Sobic003G422500 Sobic001G540400--Sobic002G397500 Sobic001G540400--Sobic010G112100 Sobic007G062800--Sobic001G540400 Sobic007G062800--Sobic005G112300 Sobic002G405800 Sobic002G405800 Sobic007G062800--Sobic002G405800 Sobic002G008900 Sobic002G008900 Sobic007G062800--Sobic002G008900 Sobic007G062800--Sobic010G010700 Sobic007G062800--Sobic004G242400 Sobic007G062800--Sobic004G034900 Sobic007G062800--Sobic004G276400 Sobic007G062800--Sobic002G397500 Sobic004G242400--Sobic007G062800 Sobic004G242400--Sobic009G109200 Sobic010G105200 Sobic010G105200 Sobic004G242400--Sobic010G105200 Sobic004G242400--Sobic004G276400 Sobic004G242400--Sobic010G010700 Sobic004G242400--Sobic010G112100 Sobic004G314000 Sobic004G314000 Sobic004G242400--Sobic004G314000 Sobic004G242400--Sobic009G256300 Sobic004G242400--Sobic001G433800 Sobic003G389200--Sobic009G256300 Sobic010G206900 Sobic010G206900 Sobic003G389200--Sobic010G206900 Sobic003G389200--Sobic003G360400 Sobic003G389200--Sobic010G112100 Sobic003G389200--Sobic010G010700 Sobic001G365900 Sobic001G365900 Sobic003G389200--Sobic001G365900 Sobic003G389200--Sobic001G540400 Sobic003G389200--Sobic007G105100 Sobic001G230000 Sobic001G230000 Sobic003G389200--Sobic001G230000
Octagon: transcription factors


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