Gene annotation
Transcriptome id Sobic.004G242400.1
Synonym Sb04g028320, AtTPR, NUA
Functional annotation nuclear-pore anchor, putative, expressed
UniProt A0A194YRG8
Pfam PF07926
Panther DB PTHR18898
NCBI CDD KOG4674; Uncharacterized conserved coiled-coil protein
KEGG Orthology K09291; TPR, MLP1, nucleoprotein TPR
Gene Ontology GO:0006606; protein import into nucleus


Orthologs (automatic annotation)
TAIR AT1G79280 : nuclear pore anchor
RAP-DB (Rice) LOC_Os02g50799.1 : nuclear-pore anchor, putative, expressed
MaizeGDB (Corn) Zm00025a033229
Brachypodium KQK01979 , PNT69655
Barley HORVU6Hr1G076430.8 , HORVU6Hr1G076430.9 , HORVU6Hr1G076430.1 , HORVU6Hr1G076430.2 , HORVU6Hr1G076430.3 , HORVU6Hr1G076430.4 , HORVU6Hr1G076430.5 , HORVU6Hr1G076430.6 , HORVU6Hr1G076430.7 , HORVU6Hr1G076430.24 , HORVU6Hr1G076430.12 , HORVU6Hr1G076430.13 , HORVU6Hr1G076430.10 , HORVU6Hr1G076430.11 , HORVU6Hr1G076430.16 , HORVU6Hr1G076430.17 , HORVU6Hr1G076430.14 , HORVU6Hr1G076430.15 , HORVU6Hr1G076430.18 , HORVU6Hr1G076430.19 , HORVU6Hr1G076430.23 , HORVU6Hr1G076430.22 , HORVU6Hr1G076430.20 , HORVU6Hr1G076430.21 , HORVU0Hr1G017200.1
Wheat TraesCS6B02G339400 , TraesCS6B02G339400 , TraesCS6D02G289000 , TraesCS6D02G289000 , TraesCS6D02G289000 , TraesCS6A02G309600 , TraesCS6A02G309600 , TraesCS6A02G309600 , TraesCS6A02G309600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G062800 SET domain containing protein, expressed -
2 Sobic.009G109200 phosphatidylinositol kinase, putative, expressed K07203: MTOR, FRAP, serine/threonine-protein kinase mTOR
3 Sobic.010G105200 SYD, putative, expressed -
4 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
5 Sobic.010G010700 PHD-finger family protein, expressed -
6 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
7 Sobic.004G314000 expressed protein -
8 Sobic.009G256300 DNA binding protein, putative, expressed -
9 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
10 Sobic.002G397500 SAC3/GANP family protein, expressed -
11 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
12 Sobic.001G363500 DIRP family protein, putative, expressed -
13 Sobic.004G048800 - K12599: SKI2, antiviral helicase SKI2
14 Sobic.005G008800 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
15 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1
16 Sobic.001G540400 expressed protein -
17 Sobic.003G095900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
18 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
19 Sobic.009G251500 chromosome segregation protein sudA, putative, expressed K06669: SMC3, structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)
20 Sobic.010G001100 chromo domain containing protein, expressed -


Gene co-expression network
sample Sobic004G242400 Sobic004G242400 Sobic007G062800 Sobic007G062800 Sobic004G242400--Sobic007G062800 Sobic009G109200 Sobic009G109200 Sobic004G242400--Sobic009G109200 Sobic010G105200 Sobic010G105200 Sobic004G242400--Sobic010G105200 Sobic004G276400 Sobic004G276400 Sobic004G242400--Sobic004G276400 Sobic010G010700 Sobic010G010700 Sobic004G242400--Sobic010G010700 Sobic010G112100 Sobic010G112100 Sobic004G242400--Sobic010G112100 Sobic004G314000 Sobic004G314000 Sobic004G242400--Sobic004G314000 Sobic009G256300 Sobic009G256300 Sobic004G242400--Sobic009G256300 Sobic001G433800 Sobic001G433800 Sobic004G242400--Sobic001G433800 Sobic001G540400 Sobic001G540400 Sobic007G062800--Sobic001G540400 Sobic005G112300 Sobic005G112300 Sobic007G062800--Sobic005G112300 Sobic002G405800 Sobic002G405800 Sobic007G062800--Sobic002G405800 Sobic002G008900 Sobic002G008900 Sobic007G062800--Sobic002G008900 Sobic007G062800--Sobic010G010700 Sobic007G062800--Sobic004G242400 Sobic004G034900 Sobic004G034900 Sobic007G062800--Sobic004G034900 Sobic007G062800--Sobic004G276400 Sobic002G397500 Sobic002G397500 Sobic007G062800--Sobic002G397500 Sobic009G109200--Sobic010G105200 Sobic009G109200--Sobic004G242400 Sobic009G109200--Sobic002G397500 Sobic001G542400 Sobic001G542400 Sobic009G109200--Sobic001G542400 Sobic009G109200--Sobic001G540400 Sobic005G008800 Sobic005G008800 Sobic009G109200--Sobic005G008800 Sobic009G109200--Sobic004G276400 Sobic003G408600 Sobic003G408600 Sobic009G109200--Sobic003G408600 Sobic009G109200--Sobic010G112100 Sobic010G105200--Sobic004G276400 Sobic010G105200--Sobic009G109200 Sobic003G186000 Sobic003G186000 Sobic010G105200--Sobic003G186000 Sobic007G098500 Sobic007G098500 Sobic010G105200--Sobic007G098500 Sobic010G105200--Sobic004G242400 Sobic010G105200--Sobic004G034900 Sobic010G105200--Sobic007G062800 Sobic010G105200--Sobic005G008800 Sobic010G105200--Sobic010G010700 Sobic004G276400--Sobic003G186000 Sobic004G276400--Sobic010G010700 Sobic004G276400--Sobic010G105200 Sobic001G194200 Sobic001G194200 Sobic004G276400--Sobic001G194200 Sobic004G276400--Sobic004G034900 Sobic004G276400--Sobic007G062800 Sobic004G291900 Sobic004G291900 Sobic004G276400--Sobic004G291900 Sobic004G276400--Sobic004G242400 Sobic008G001200 Sobic008G001200 Sobic004G276400--Sobic008G001200 Sobic010G206900 Sobic010G206900 Sobic010G010700--Sobic010G206900 Sobic010G010700--Sobic004G034900 Sobic010G010700--Sobic004G276400 Sobic010G010700--Sobic001G194200 Sobic010G010700--Sobic007G062800 Sobic010G010700--Sobic002G008900 Sobic010G010700--Sobic005G112300 Sobic010G010700--Sobic008G001200 Sobic010G010700--Sobic003G186000 Sobic003G360400 Sobic003G360400 Sobic010G112100--Sobic003G360400 Sobic010G112100--Sobic005G112300 Sobic010G112100--Sobic009G256300 Sobic010G112100--Sobic003G408600 Sobic010G112100--Sobic001G433800 Sobic010G112100--Sobic001G540400 Sobic010G112100--Sobic007G062800 Sobic010G112100--Sobic004G242400 Sobic003G389200 Sobic003G389200 Sobic010G112100--Sobic003G389200 Sobic010G139000 Sobic010G139000 Sobic004G314000--Sobic010G139000 Sobic004G314000--Sobic005G008800 Sobic004G314000--Sobic005G112300 Sobic010G279450 Sobic010G279450 Sobic004G314000--Sobic010G279450 Sobic004G314000--Sobic004G242400 Sobic004G314000--Sobic010G206900 Sobic003G401600 Sobic003G401600 Sobic004G314000--Sobic003G401600 Sobic002G309600 Sobic002G309600 Sobic004G314000--Sobic002G309600 Sobic009G040600 Sobic009G040600 Sobic004G314000--Sobic009G040600 Sobic009G256300--Sobic010G112100 Sobic009G256300--Sobic003G389200 Sobic009G256300--Sobic004G242400 Sobic009G256300--Sobic010G010700 Sobic010G123600 Sobic010G123600 Sobic009G256300--Sobic010G123600 Sobic009G256300--Sobic003G360400 Sobic009G256300--Sobic009G109200 Sobic009G256300--Sobic004G276400 Sobic009G256300--Sobic001G542400 Sobic001G433800--Sobic010G112100 Sobic001G433800--Sobic003G360400 Sobic007G063000 Sobic007G063000 Sobic001G433800--Sobic007G063000 Sobic001G433800--Sobic005G112300 Sobic001G433800--Sobic004G242400 Sobic002G133300 Sobic002G133300 Sobic001G433800--Sobic002G133300 Sobic001G363500 Sobic001G363500 Sobic001G433800--Sobic001G363500 Sobic006G252900 Sobic006G252900 Sobic001G433800--Sobic006G252900 Sobic006G041600 Sobic006G041600 Sobic001G433800--Sobic006G041600
Octagon: transcription factors


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