Gene annotation
Transcriptome id Sobic.003G095900.1
Synonym Sb03g008040
Functional annotation pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed
UniProt A0A1B6Q2A9
Pfam PF00270 PF00035 PF00271 PF07717 PF04408
Panther DB PTHR18934 PTHR18934:SF112
NCBI CDD -
KEGG Orthology K14442; DHX36, ATP-dependent RNA helicase DHX36
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding GO:0004386helicase activity


Orthologs (automatic annotation)
TAIR AT1G48650 : DEA(D/H)-box RNA helicase family protein
RAP-DB (Rice) LOC_Os01g02884.1 : ATP-dependent RNA helicase DHX36, putative, expressed
MaizeGDB (Corn) Zm00025a023710
Brachypodium KQK02429 , KQK02430
Barley HORVU5Hr1G094990.8 , HORVU5Hr1G094990.9 , HORVU5Hr1G094990.4 , HORVU5Hr1G094990.5 , HORVU5Hr1G094990.6 , HORVU3Hr1G002800.13 , HORVU3Hr1G002800.12 , HORVU3Hr1G002800.11 , HORVU3Hr1G002800.10 , HORVU3Hr1G002800.17 , HORVU3Hr1G002800.16 , HORVU3Hr1G002800.15 , HORVU3Hr1G002800.19 , HORVU3Hr1G002800.18 , HORVU5Hr1G094990.23 , HORVU5Hr1G094990.27 , HORVU5Hr1G094990.24 , HORVU3Hr1G002800.2 , HORVU3Hr1G002800.1 , HORVU3Hr1G002800.7 , HORVU3Hr1G002800.6 , HORVU3Hr1G002800.5 , HORVU3Hr1G002800.4 , HORVU5Hr1G094990.31 , HORVU5Hr1G094990.32 , HORVU3Hr1G002800.8 , HORVU3Hr1G002800.22 , HORVU3Hr1G002800.21 , HORVU5Hr1G094990.15 , HORVU5Hr1G094990.10 , HORVU5Hr1G094990.14 , HORVU3Hr1G002800.14 , HORVU5Hr1G094990.18 , HORVU3Hr1G002800.3 , HORVU3Hr1G002800.23 , HORVU3Hr1G002800.20 , HORVU3Hr1G002800.9
Wheat TraesCS3B02G024900 , TraesCS5A02G387700 , TraesCS5A02G387700 , TraesCS5B02G392800 , TraesCS3A02G021300 , TraesCS3D02G025600 , TraesCS5D02G397600 , TraesCS5D02G397600
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G242400 nuclear-pore anchor, putative, expressed K09291: TPR, MLP1, nucleoprotein TPR
2 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
3 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
4 Sobic.001G089600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
5 Sobic.006G088200 nonsense-mediated decay UPF3, putative, expressed K14328: UPF3, regulator of nonsense transcripts 3
6 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
7 Sobic.009G256400 ATP binding protein, putative, expressed K15192: BTAF1, TATA-binding protein-associated factor
8 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
9 Sobic.001G289800 BAH domain containing protein, putative, expressed -
10 Sobic.003G166750 - K15188: cyclin T
11 Sobic.002G317200 uncharacterized ACR, COG1590 family protein, expressed K15450: tRNA wybutosine-synthesizing protein 3
12 Sobic.004G314000 expressed protein -
13 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
14 Sobic.002G397500 SAC3/GANP family protein, expressed -
15 Sobic.003G188400 glutamate dehydrogenase protein, putative, expressed K00262: E1.4.1.4, glutamate dehydrogenase (NADP+)
16 Sobic.004G023000 SAC9, putative, expressed -
17 Sobic.007G063000 expressed protein -
18 Sobic.006G096900 expressed protein -
19 Sobic.009G109200 phosphatidylinositol kinase, putative, expressed K07203: MTOR, FRAP, serine/threonine-protein kinase mTOR
20 Sobic.007G062800 SET domain containing protein, expressed -


Gene co-expression network
sample Sobic003G095900 Sobic003G095900 Sobic004G242400 Sobic004G242400 Sobic003G095900--Sobic004G242400 Sobic001G433800 Sobic001G433800 Sobic003G095900--Sobic001G433800 Sobic002G133300 Sobic002G133300 Sobic003G095900--Sobic002G133300 Sobic001G089600 Sobic001G089600 Sobic003G095900--Sobic001G089600 Sobic006G088200 Sobic006G088200 Sobic003G095900--Sobic006G088200 Sobic003G360400 Sobic003G360400 Sobic003G095900--Sobic003G360400 Sobic009G256400 Sobic009G256400 Sobic003G095900--Sobic009G256400 Sobic004G276400 Sobic004G276400 Sobic003G095900--Sobic004G276400 Sobic001G289800 Sobic001G289800 Sobic003G095900--Sobic001G289800 Sobic007G062800 Sobic007G062800 Sobic004G242400--Sobic007G062800 Sobic009G109200 Sobic009G109200 Sobic004G242400--Sobic009G109200 Sobic010G105200 Sobic010G105200 Sobic004G242400--Sobic010G105200 Sobic004G242400--Sobic004G276400 Sobic010G010700 Sobic010G010700 Sobic004G242400--Sobic010G010700 Sobic010G112100 Sobic010G112100 Sobic004G242400--Sobic010G112100 Sobic004G314000 Sobic004G314000 Sobic004G242400--Sobic004G314000 Sobic009G256300 Sobic009G256300 Sobic004G242400--Sobic009G256300 Sobic004G242400--Sobic001G433800 Sobic001G433800--Sobic010G112100 Sobic001G433800--Sobic003G360400 Sobic007G063000 Sobic007G063000 Sobic001G433800--Sobic007G063000 Sobic005G112300 Sobic005G112300 Sobic001G433800--Sobic005G112300 Sobic001G433800--Sobic004G242400 Sobic001G433800--Sobic002G133300 Sobic001G363500 Sobic001G363500 Sobic001G433800--Sobic001G363500 Sobic006G252900 Sobic006G252900 Sobic001G433800--Sobic006G252900 Sobic006G041600 Sobic006G041600 Sobic001G433800--Sobic006G041600 Sobic002G133300--Sobic004G276400 Sobic002G133300--Sobic001G433800 Sobic001G004400 Sobic001G004400 Sobic002G133300--Sobic001G004400 Sobic002G133300--Sobic001G289800 Sobic003G072200 Sobic003G072200 Sobic002G133300--Sobic003G072200 Sobic002G397500 Sobic002G397500 Sobic002G133300--Sobic002G397500 Sobic004G131300 Sobic004G131300 Sobic002G133300--Sobic004G131300 Sobic001G194200 Sobic001G194200 Sobic002G133300--Sobic001G194200 Sobic001G493700 Sobic001G493700 Sobic002G133300--Sobic001G493700 Sobic001G089600--Sobic003G095900 Sobic006G086600 Sobic006G086600 Sobic001G089600--Sobic006G086600 Sobic010G115400 Sobic010G115400 Sobic001G089600--Sobic010G115400 Sobic001G089600--Sobic001G493700 Sobic001G089600--Sobic002G397500 Sobic004G260100 Sobic004G260100 Sobic001G089600--Sobic004G260100 Sobic004G248600 Sobic004G248600 Sobic001G089600--Sobic004G248600 Sobic004G322400 Sobic004G322400 Sobic001G089600--Sobic004G322400 Sobic009G084900 Sobic009G084900 Sobic001G089600--Sobic009G084900 Sobic006G088200--Sobic003G095900 Sobic006G088200--Sobic003G360400 Sobic006G088200--Sobic001G493700 Sobic001G275300 Sobic001G275300 Sobic006G088200--Sobic001G275300 Sobic006G088200--Sobic002G133300 Sobic003G379200 Sobic003G379200 Sobic006G088200--Sobic003G379200 Sobic003G214600 Sobic003G214600 Sobic006G088200--Sobic003G214600 Sobic006G088200--Sobic001G433800 Sobic001G227400 Sobic001G227400 Sobic006G088200--Sobic001G227400 Sobic003G360400--Sobic010G112100 Sobic002G154000 Sobic002G154000 Sobic003G360400--Sobic002G154000 Sobic001G354600 Sobic001G354600 Sobic003G360400--Sobic001G354600 Sobic003G360400--Sobic001G433800 Sobic003G389200 Sobic003G389200 Sobic003G360400--Sobic003G389200 Sobic009G044800 Sobic009G044800 Sobic003G360400--Sobic009G044800 Sobic003G360400--Sobic005G112300 Sobic003G360400--Sobic007G063000 Sobic003G360400--Sobic009G256300 Sobic001G457800 Sobic001G457800 Sobic009G256400--Sobic001G457800 Sobic008G001200 Sobic008G001200 Sobic009G256400--Sobic008G001200 Sobic001G370900 Sobic001G370900 Sobic009G256400--Sobic001G370900 Sobic004G291900 Sobic004G291900 Sobic009G256400--Sobic004G291900 Sobic005G001000 Sobic005G001000 Sobic009G256400--Sobic005G001000 Sobic003G166750 Sobic003G166750 Sobic009G256400--Sobic003G166750 Sobic009G256400--Sobic001G194200 Sobic009G256400--Sobic004G276400 Sobic009G256400--Sobic010G010700 Sobic003G186000 Sobic003G186000 Sobic004G276400--Sobic003G186000 Sobic004G276400--Sobic010G010700 Sobic004G276400--Sobic010G105200 Sobic004G276400--Sobic001G194200 Sobic004G034900 Sobic004G034900 Sobic004G276400--Sobic004G034900 Sobic004G276400--Sobic007G062800 Sobic004G276400--Sobic004G291900 Sobic004G276400--Sobic004G242400 Sobic004G276400--Sobic008G001200 Sobic001G289600 Sobic001G289600 Sobic001G289800--Sobic001G289600 Sobic003G422500 Sobic003G422500 Sobic001G289800--Sobic003G422500 Sobic001G289800--Sobic001G194200 Sobic001G289800--Sobic004G291900 Sobic001G289800--Sobic004G034900 Sobic001G002000 Sobic001G002000 Sobic001G289800--Sobic001G002000 Sobic001G289800--Sobic010G010700 Sobic001G289800--Sobic007G062800 Sobic001G289800--Sobic005G001000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.